data_8FEN # _model_server_result.job_id 3IKFnohyMONBvXveYIyExA _model_server_result.datetime_utc '2024-11-25 07:43:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fen # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8FEN # _exptl.entry_id 8FEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FEN _cell.length_a 119.059 _cell.length_b 119.059 _cell.length_c 56.988 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 273 n n PA O2A NAP sing 274 n n PA O5B NAP sing 275 n n PA O3 NAP sing 276 n n O2A HOA2 NAP sing 277 n n O5B C5B NAP sing 278 n n C5B C4B NAP sing 279 n n C5B H51A NAP sing 280 n n C5B H52A NAP sing 281 n n C4B O4B NAP sing 282 n n C4B C3B NAP sing 283 n n C4B H4B NAP sing 284 n n O4B C1B NAP sing 285 n n C3B O3B NAP sing 286 n n C3B C2B NAP sing 287 n n C3B H3B NAP sing 288 n n O3B HO3A NAP sing 289 n n C2B O2B NAP sing 290 n n C2B C1B NAP sing 291 n n C2B H2B NAP sing 292 n n O2B P2B NAP sing 293 n n C1B N9A NAP sing 294 n n C1B H1B NAP sing 295 n n N9A C8A NAP sing 296 n y N9A C4A NAP sing 297 n y C8A N7A NAP doub 298 n y C8A H8A NAP sing 299 n n N7A C5A NAP sing 300 n y C5A C6A NAP sing 301 n y C5A C4A NAP doub 302 n y C6A N6A NAP sing 303 n n C6A N1A NAP doub 304 n y N6A H61A NAP sing 305 n n N6A H62A NAP sing 306 n n N1A C2A NAP sing 307 n y C2A N3A NAP doub 308 n y C2A H2A NAP sing 309 n n N3A C4A NAP sing 310 n y O3 PN NAP sing 311 n n PN O1N NAP doub 312 n n PN O2N NAP sing 313 n n PN O5D NAP sing 314 n n O5D C5D NAP sing 315 n n C5D C4D NAP sing 316 n n C5D H51N NAP sing 317 n n C5D H52N NAP sing 318 n n C4D O4D NAP sing 319 n n C4D C3D NAP sing 320 n n C4D H4D NAP sing 321 n n O4D C1D NAP sing 322 n n C3D O3D NAP sing 323 n n C3D C2D NAP sing 324 n n C3D H3D NAP sing 325 n n O3D HO3N NAP sing 326 n n C2D O2D NAP sing 327 n n C2D C1D NAP sing 328 n n C2D H2D NAP sing 329 n n O2D HO2N NAP sing 330 n n C1D N1N NAP sing 331 n n C1D H1D NAP sing 332 n n N1N C2N NAP sing 333 n y N1N C6N NAP doub 334 n y C2N C3N NAP doub 335 n y C2N H2N NAP sing 336 n n C3N C7N NAP sing 337 n n C3N C4N NAP sing 338 n y C7N O7N NAP doub 339 n n C7N N7N NAP sing 340 n n N7N H71N NAP sing 341 n n N7N H72N NAP sing 342 n n C4N C5N NAP doub 343 n y C4N H4N NAP sing 344 n n C5N C6N NAP sing 345 n y C5N H5N NAP sing 346 n n C6N H6N NAP sing 347 n n P2B O1X NAP doub 348 n n P2B O2X NAP sing 349 n n P2B O3X NAP sing 350 n n O2X HOP2 NAP sing 351 n n O3X HOP3 NAP sing 352 n n # _atom_sites.entry_id 8FEN _atom_sites.fract_transf_matrix[1][1] 0.008399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 1330 NAP NAP . C 3 DQH A 1 402 1331 DQH DQH . D 4 HOH A 1 501 38 HOH HOH . D 4 HOH A 2 502 36 HOH HOH . D 4 HOH A 3 503 19 HOH HOH . D 4 HOH A 4 504 9 HOH HOH . D 4 HOH A 5 505 21 HOH HOH . D 4 HOH A 6 506 10 HOH HOH . D 4 HOH A 7 507 31 HOH HOH . D 4 HOH A 8 508 25 HOH HOH . D 4 HOH A 9 509 32 HOH HOH . D 4 HOH A 10 510 43 HOH HOH . D 4 HOH A 11 511 3 HOH HOH . D 4 HOH A 12 512 4 HOH HOH . D 4 HOH A 13 513 2 HOH HOH . D 4 HOH A 14 514 6 HOH HOH . D 4 HOH A 15 515 16 HOH HOH . D 4 HOH A 16 516 18 HOH HOH . D 4 HOH A 17 517 11 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 15 HOH HOH . D 4 HOH A 20 520 5 HOH HOH . D 4 HOH A 21 521 12 HOH HOH . D 4 HOH A 22 522 50 HOH HOH . D 4 HOH A 23 523 47 HOH HOH . D 4 HOH A 24 524 52 HOH HOH . D 4 HOH A 25 525 7 HOH HOH . D 4 HOH A 26 526 20 HOH HOH . D 4 HOH A 27 527 33 HOH HOH . D 4 HOH A 28 528 35 HOH HOH . D 4 HOH A 29 529 17 HOH HOH . D 4 HOH A 30 530 51 HOH HOH . D 4 HOH A 31 531 45 HOH HOH . D 4 HOH A 32 532 8 HOH HOH . D 4 HOH A 33 533 24 HOH HOH . D 4 HOH A 34 534 1 HOH HOH . D 4 HOH A 35 535 22 HOH HOH . D 4 HOH A 36 536 42 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 13 HOH HOH . D 4 HOH A 39 539 49 HOH HOH . D 4 HOH A 40 540 44 HOH HOH . D 4 HOH A 41 541 29 HOH HOH . D 4 HOH A 42 542 27 HOH HOH . D 4 HOH A 43 543 48 HOH HOH . D 4 HOH A 44 544 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 61.871 23.03 14.881 1 46.89 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . B 2 62.047 21.64 14.283 1 51.54 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . B 2 63.039 23.875 14.578 1 36.05 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . B 2 61.686 22.928 16.568 1 53.46 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . B 2 61.098 21.763 17.093 1 49.07 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . B 2 61.812 21.37 18.363 1 52.24 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . B 2 61.162 20.424 18.958 1 48.13 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . B 2 63.313 20.784 17.989 1 50.13 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . B 2 64.374 21.657 18.589 1 53.51 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . B 2 63.38 19.621 18.445 1 50.06 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . B 2 64.738 19.365 19.116 1 78.39 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . B 2 62.235 19.524 19.518 1 49.63 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . B 2 61.781 18.254 19.595 1 48.67 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . B 2 61.323 17.389 18.676 1 57.71 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . B 2 61.001 16.249 19.314 1 50.42 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . B 2 61.256 16.41 20.601 1 44.56 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . B 2 61.111 15.574 21.685 1 49.73 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . B 2 60.612 14.22 21.647 1 52.14 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . B 2 61.448 15.981 22.885 1 46.93 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . B 2 61.943 17.252 23.066 1 45.22 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . B 2 62.086 18.079 22.007 1 49.39 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . B 2 61.745 17.663 20.779 1 48.6 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . B 2 60.587 23.708 14.251 1 61.17 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . B 2 59.893 25.177 14.858 1 45.38 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . B 2 59.367 25.97 13.733 1 56.22 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . B 2 60.922 25.965 15.583 1 56.34 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . B 2 58.642 24.756 15.886 1 53.09 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . B 2 58.599 25.271 17.168 1 41.06 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . B 2 57.124 25.415 17.551 1 44.41 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . B 2 56.57 26.375 16.839 1 46.02 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . B 2 56.359 24.106 17.172 1 44.71 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . B 2 55.568 23.751 18.164 1 35.86 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . B 2 55.534 24.489 15.91 1 43.88 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . B 2 54.317 23.646 15.836 1 46.45 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . B 2 55.227 25.748 16.147 1 41.67 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . B 2 54.907 26.474 14.972 1 42.12 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . B 2 55.862 26.765 14.041 1 43.71 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . B 2 55.517 27.483 12.907 1 39.19 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . B 2 56.586 27.828 11.843 1 41.21 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . B 2 56.265 28.297 10.833 1 45.28 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . B 2 58.018 27.585 12.115 1 37.43 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . B 2 54.236 27.903 12.733 1 40.6 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . B 2 53.28 27.613 13.675 1 40.84 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . B 2 53.625 26.9 14.79 1 42.61 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . B 2 65.826 18.369 18.322 1 124.5 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . B 2 65.098 17.511 17.313 1 38.31 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . B 2 66.868 19.238 17.59 1 65.56 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . B 2 66.522 17.477 19.327 1 80.94 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #