data_8FEN # _model_server_result.job_id fZwk9YZD2YO4HZI4SB6_1A _model_server_result.datetime_utc '2024-11-08 01:49:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fen # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8FEN # _exptl.entry_id 8FEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.252 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FEN _cell.length_a 119.059 _cell.length_b 119.059 _cell.length_c 56.988 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 O7' _chem_comp.formula_weight 304.252 _chem_comp.id DQH _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R,3R)-TRANS-DIHYDROQUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DQH doub 83 n y C1 C6 DQH sing 84 n y C1 H1 DQH sing 85 n n C2 C3 DQH sing 86 n y C2 O30 DQH sing 87 n n C3 C4 DQH doub 88 n y C3 C9 DQH sing 89 n n C4 C5 DQH sing 90 n y C4 O12 DQH sing 91 n n C5 C6 DQH doub 92 n y C5 H5 DQH sing 93 n n C6 O29 DQH sing 94 n n C9 C10 DQH sing 95 n n C9 O13 DQH doub 96 n n C10 C11 DQH sing 97 n n C10 O27 DQH sing 98 n n C10 H10 DQH sing 99 n n C11 C14 DQH sing 100 n n C11 O12 DQH sing 101 n n C11 H11 DQH sing 102 n n C14 C15 DQH doub 103 n y C14 C19 DQH sing 104 n y C15 C16 DQH sing 105 n y C15 H15 DQH sing 106 n n C16 C17 DQH doub 107 n y C16 H16 DQH sing 108 n n C17 C18 DQH sing 109 n y C17 O24 DQH sing 110 n n C18 C19 DQH doub 111 n y C18 O23 DQH sing 112 n n C19 H19 DQH sing 113 n n O23 H23 DQH sing 114 n n O24 H24 DQH sing 115 n n O27 H27 DQH sing 116 n n O29 H29 DQH sing 117 n n O30 H30 DQH sing 118 n n # _atom_sites.entry_id 8FEN _atom_sites.fract_transf_matrix[1][1] 0.008399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 1330 NAP NAP . C 3 DQH A 1 402 1331 DQH DQH . D 4 HOH A 1 501 38 HOH HOH . D 4 HOH A 2 502 36 HOH HOH . D 4 HOH A 3 503 19 HOH HOH . D 4 HOH A 4 504 9 HOH HOH . D 4 HOH A 5 505 21 HOH HOH . D 4 HOH A 6 506 10 HOH HOH . D 4 HOH A 7 507 31 HOH HOH . D 4 HOH A 8 508 25 HOH HOH . D 4 HOH A 9 509 32 HOH HOH . D 4 HOH A 10 510 43 HOH HOH . D 4 HOH A 11 511 3 HOH HOH . D 4 HOH A 12 512 4 HOH HOH . D 4 HOH A 13 513 2 HOH HOH . D 4 HOH A 14 514 6 HOH HOH . D 4 HOH A 15 515 16 HOH HOH . D 4 HOH A 16 516 18 HOH HOH . D 4 HOH A 17 517 11 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 15 HOH HOH . D 4 HOH A 20 520 5 HOH HOH . D 4 HOH A 21 521 12 HOH HOH . D 4 HOH A 22 522 50 HOH HOH . D 4 HOH A 23 523 47 HOH HOH . D 4 HOH A 24 524 52 HOH HOH . D 4 HOH A 25 525 7 HOH HOH . D 4 HOH A 26 526 20 HOH HOH . D 4 HOH A 27 527 33 HOH HOH . D 4 HOH A 28 528 35 HOH HOH . D 4 HOH A 29 529 17 HOH HOH . D 4 HOH A 30 530 51 HOH HOH . D 4 HOH A 31 531 45 HOH HOH . D 4 HOH A 32 532 8 HOH HOH . D 4 HOH A 33 533 24 HOH HOH . D 4 HOH A 34 534 1 HOH HOH . D 4 HOH A 35 535 22 HOH HOH . D 4 HOH A 36 536 42 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 13 HOH HOH . D 4 HOH A 39 539 49 HOH HOH . D 4 HOH A 40 540 44 HOH HOH . D 4 HOH A 41 541 29 HOH HOH . D 4 HOH A 42 542 27 HOH HOH . D 4 HOH A 43 543 48 HOH HOH . D 4 HOH A 44 544 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DQH . . . C 3 56.032 24.298 9.322 1 51.96 ? C1 DQH 402 A 1 HETATM 2 C C2 DQH . . . C 3 55.053 24.708 10.25 1 53.34 ? C2 DQH 402 A 1 HETATM 3 C C3 DQH . . . C 3 53.846 25.299 9.783 1 52.76 ? C3 DQH 402 A 1 HETATM 4 C C4 DQH . . . C 3 53.638 25.472 8.417 1 59.54 ? C4 DQH 402 A 1 HETATM 5 C C5 DQH . . . C 3 54.622 25.053 7.485 1 55.54 ? C5 DQH 402 A 1 HETATM 6 C C6 DQH . . . C 3 55.817 24.469 7.943 1 64.81 ? C6 DQH 402 A 1 HETATM 7 C C9 DQH . . . C 3 52.777 25.756 10.729 1 57.23 ? C9 DQH 402 A 1 HETATM 8 C C10 DQH . . . C 3 51.736 26.637 10.204 1 54.03 ? C10 DQH 402 A 1 HETATM 9 C C11 DQH . . . C 3 51.214 26.072 8.87 1 54.85 ? C11 DQH 402 A 1 HETATM 10 C C14 DQH . . . C 3 50.037 26.849 8.365 1 57.72 ? C14 DQH 402 A 1 HETATM 11 C C15 DQH . . . C 3 50.167 28.165 7.957 1 56.59 ? C15 DQH 402 A 1 HETATM 12 C C16 DQH . . . C 3 49.031 28.868 7.487 1 58.3 ? C16 DQH 402 A 1 HETATM 13 C C17 DQH . . . C 3 47.802 28.238 7.438 1 58.98 ? C17 DQH 402 A 1 HETATM 14 C C18 DQH . . . C 3 47.68 26.902 7.855 1 53.79 ? C18 DQH 402 A 1 HETATM 15 C C19 DQH . . . C 3 48.799 26.216 8.315 1 52.58 ? C19 DQH 402 A 1 HETATM 16 O O12 DQH . . . C 3 52.328 26.106 7.938 1 61.63 ? O12 DQH 402 A 1 HETATM 17 O O13 DQH . . . C 3 52.779 25.41 11.871 1 64.78 ? O13 DQH 402 A 1 HETATM 18 O O23 DQH . . . C 3 46.413 26.241 7.807 1 57.58 ? O23 DQH 402 A 1 HETATM 19 O O24 DQH . . . C 3 46.65 28.936 6.965 1 62.72 ? O24 DQH 402 A 1 HETATM 20 O O27 DQH . . . C 3 50.617 26.75 11.169 1 59.3 ? O27 DQH 402 A 1 HETATM 21 O O29 DQH . . . C 3 56.774 24.067 7.032 1 65.11 ? O29 DQH 402 A 1 HETATM 22 O O30 DQH . . . C 3 55.272 24.533 11.627 1 56.34 ? O30 DQH 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #