data_8FF0 # _model_server_result.job_id vqdYVcJ_6kB90lzVjSuYLg _model_server_result.datetime_utc '2024-11-18 01:26:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ff0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 8FF0 # _exptl.entry_id 8FF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.496 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-azanyl-9-[(3~{R})-1-[(~{E})-but-2-enoyl]pyrrolidin-3-yl]-7-(4-phenoxyphenyl)purin-8-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FF0 _cell.length_a 108.187 _cell.length_b 108.187 _cell.length_c 45.172 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 87 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 481 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C19 _struct_conn.ptnr2_label_comp_id 7GB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7GB _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.696 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H24 N6 O3' _chem_comp.formula_weight 456.496 _chem_comp.id 7GB _chem_comp.mon_nstd_flag . _chem_comp.name 6-azanyl-9-[(3~{R})-1-[(~{E})-but-2-enoyl]pyrrolidin-3-yl]-7-(4-phenoxyphenyl)purin-8-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C34 7GB doub 1 n y C33 C32 7GB sing 2 n y C34 C29 7GB sing 3 n y C32 C31 7GB doub 4 n y C29 O28 7GB sing 5 n n C29 C30 7GB doub 6 n y C31 C30 7GB sing 7 n y O28 C25 7GB sing 8 n n C25 C24 7GB doub 9 n y C25 C26 7GB sing 10 n y C24 C23 7GB sing 11 n y C26 C27 7GB doub 12 n y C23 C22 7GB doub 13 n y C27 C22 7GB sing 14 n y C22 N9 7GB sing 15 n n O10 C8 7GB doub 16 n n N9 C8 7GB sing 17 n n N9 C5 7GB sing 18 n n O17 C16 7GB doub 19 n n C8 N7 7GB sing 20 n n N21 C6 7GB sing 21 n n C18 C16 7GB sing 22 n n C18 C19 7GB doub 23 e n C16 N14 7GB sing 24 n n C5 C6 7GB doub 25 n y C5 C4 7GB sing 26 n y C6 N1 7GB sing 27 n y C20 C19 7GB sing 28 n n N7 C4 7GB sing 29 n n N7 C11 7GB sing 30 n n C12 C13 7GB sing 31 n n C12 C11 7GB sing 32 n n N14 C13 7GB sing 33 n n N14 C15 7GB sing 34 n n C4 N3 7GB doub 35 n y C11 C15 7GB sing 36 n n N1 C2 7GB doub 37 n y N3 C2 7GB sing 38 n y C2 H1 7GB sing 39 n n C11 H2 7GB sing 40 n n C12 H3 7GB sing 41 n n C12 H4 7GB sing 42 n n C13 H5 7GB sing 43 n n C13 H6 7GB sing 44 n n C15 H7 7GB sing 45 n n C15 H8 7GB sing 46 n n C19 H9 7GB sing 47 n n C20 H10 7GB sing 48 n n C20 H11 7GB sing 49 n n C20 H12 7GB sing 50 n n C24 H13 7GB sing 51 n n C27 H14 7GB sing 52 n n C30 H15 7GB sing 53 n n C31 H16 7GB sing 54 n n C32 H17 7GB sing 55 n n C33 H18 7GB sing 56 n n C34 H19 7GB sing 57 n n C18 H20 7GB sing 58 n n N21 H21 7GB sing 59 n n N21 H22 7GB sing 60 n n C23 H23 7GB sing 61 n n C26 H24 7GB sing 62 n n # _atom_sites.entry_id 8FF0 _atom_sites.fract_transf_matrix[1][1] 0.009243 _atom_sites.fract_transf_matrix[1][2] 0.005337 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7GB A 1 801 801 7GB 7GB . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1005 HOH HOH . C 3 HOH A 4 1004 1003 HOH HOH . C 3 HOH A 5 1005 1006 HOH HOH . C 3 HOH A 6 1006 1004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 7GB . . . B 2 34.248 -28.32 -13.923 1 65.04 ? C2 7GB 801 A 1 HETATM 2 C C8 7GB . . . B 2 38.051 -28.02 -11.22 1 77.72 ? C8 7GB 801 A 1 HETATM 3 C C11 7GB . . . B 2 38.566 -26.721 -13.497 1 94.5 ? C11 7GB 801 A 1 HETATM 4 C C12 7GB . . . B 2 40.125 -27.218 -13.616 1 92.36 ? C12 7GB 801 A 1 HETATM 5 C C13 7GB . . . B 2 40.884 -26.095 -13.489 1 98.6 ? C13 7GB 801 A 1 HETATM 6 C C15 7GB . . . B 2 38.602 -25.43 -13.15 1 99.17 ? C15 7GB 801 A 1 HETATM 7 C C16 7GB . . . B 2 40.478 -24.606 -11.311 1 120.47 ? C16 7GB 801 A 1 HETATM 8 O O17 7GB . . . B 2 41.646 -24.685 -10.985 1 133.99 ? O17 7GB 801 A 1 HETATM 9 C C19 7GB . . . B 2 38.701 -22.796 -10.717 1 125.86 ? C19 7GB 801 A 1 HETATM 10 C C20 7GB . . . B 2 37.736 -22.221 -9.639 1 112.62 ? C20 7GB 801 A 1 HETATM 11 C C22 7GB . . . B 2 36.754 -29.401 -9.431 1 79.01 ? C22 7GB 801 A 1 HETATM 12 C C24 7GB . . . B 2 36.826 -29.469 -7.01 1 89.33 ? C24 7GB 801 A 1 HETATM 13 C C27 7GB . . . B 2 36.612 -30.779 -9.465 1 75.64 ? C27 7GB 801 A 1 HETATM 14 O O28 7GB . . . B 2 36.55 -31.581 -5.822 1 73.37 ? O28 7GB 801 A 1 HETATM 15 C C30 7GB . . . B 2 34.456 -30.277 -4.854 1 88.14 ? C30 7GB 801 A 1 HETATM 16 C C31 7GB . . . B 2 33.938 -29.908 -3.621 1 79.75 ? C31 7GB 801 A 1 HETATM 17 C C32 7GB . . . B 2 34.601 -30.241 -2.466 1 84.34 ? C32 7GB 801 A 1 HETATM 18 C C33 7GB . . . B 2 35.783 -30.947 -2.53 1 79.01 ? C33 7GB 801 A 1 HETATM 19 C C34 7GB . . . B 2 36.302 -31.325 -3.759 1 84.04 ? C34 7GB 801 A 1 HETATM 20 N N1 7GB . . . B 2 33.776 -29.018 -12.85 1 69.11 ? N1 7GB 801 A 1 HETATM 21 N N3 7GB . . . B 2 35.525 -27.796 -13.91 1 70.97 ? N3 7GB 801 A 1 HETATM 22 C C4 7GB . . . B 2 36.316 -27.972 -12.832 1 64.3 ? C4 7GB 801 A 1 HETATM 23 C C5 7GB . . . B 2 35.849 -28.692 -11.756 1 59.2 ? C5 7GB 801 A 1 HETATM 24 C C6 7GB . . . B 2 34.577 -29.194 -11.754 1 71.32 ? C6 7GB 801 A 1 HETATM 25 N N7 7GB . . . B 2 37.716 -27.53 -12.534 1 73.51 ? N7 7GB 801 A 1 HETATM 26 N N9 7GB . . . B 2 36.893 -28.665 -10.686 1 65.92 ? N9 7GB 801 A 1 HETATM 27 O O10 7GB . . . B 2 39.1 -27.842 -10.625 1 89.24 ? O10 7GB 801 A 1 HETATM 28 N N14 7GB . . . B 2 40.033 -25.274 -12.566 1 95.01 ? N14 7GB 801 A 1 HETATM 29 C C18 7GB . . . B 2 39.457 -23.871 -10.36 1 119.69 ? C18 7GB 801 A 1 HETATM 30 N N21 7GB . . . B 2 33.709 -29.962 -10.879 1 74.53 ? N21 7GB 801 A 1 HETATM 31 C C23 7GB . . . B 2 36.934 -28.751 -8.204 1 92.36 ? C23 7GB 801 A 1 HETATM 32 C C25 7GB . . . B 2 36.629 -30.846 -7.042 1 67.59 ? C25 7GB 801 A 1 HETATM 33 C C26 7GB . . . B 2 36.516 -31.508 -8.263 1 80.79 ? C26 7GB 801 A 1 HETATM 34 C C29 7GB . . . B 2 35.636 -30.989 -4.914 1 74.74 ? C29 7GB 801 A 1 HETATM 35 H H1 7GB . . . B 2 33.605 -28.172 -14.808 1 79.02 ? H1 7GB 801 A 1 HETATM 36 H H2 7GB . . . B 2 38.117 -26.831 -14.515 1 114.37 ? H2 7GB 801 A 1 HETATM 37 H H3 7GB . . . B 2 40.294 -27.671 -14.573 1 111.8 ? H3 7GB 801 A 1 HETATM 38 H H4 7GB . . . B 2 40.352 -27.907 -12.827 1 111.8 ? H4 7GB 801 A 1 HETATM 39 H H5 7GB . . . B 2 41.835 -26.317 -13.044 1 119.29 ? H5 7GB 801 A 1 HETATM 40 H H6 7GB . . . B 2 41.015 -25.606 -14.435 1 119.29 ? H6 7GB 801 A 1 HETATM 41 H H7 7GB . . . B 2 37.836 -25.207 -12.38 1 119.98 ? H7 7GB 801 A 1 HETATM 42 H H8 7GB . . . B 2 38.464 -24.779 -14.037 1 119.98 ? H8 7GB 801 A 1 HETATM 43 H H10 7GB . . . B 2 37.906 -21.182 -9.53 1 136.12 ? H10 7GB 801 A 1 HETATM 44 H H11 7GB . . . B 2 36.734 -22.383 -9.937 1 136.12 ? H11 7GB 801 A 1 HETATM 45 H H12 7GB . . . B 2 37.909 -22.704 -8.714 1 136.12 ? H12 7GB 801 A 1 HETATM 46 H H13 7GB . . . B 2 36.897 -28.959 -6.066 1 108.17 ? H13 7GB 801 A 1 HETATM 47 H H14 7GB . . . B 2 36.577 -31.289 -10.404 1 91.74 ? H14 7GB 801 A 1 HETATM 48 H H15 7GB . . . B 2 33.958 -30.018 -5.728 1 106.74 ? H15 7GB 801 A 1 HETATM 49 H H16 7GB . . . B 2 33.041 -29.377 -3.571 1 96.67 ? H16 7GB 801 A 1 HETATM 50 H H17 7GB . . . B 2 34.194 -29.945 -1.498 1 102.18 ? H17 7GB 801 A 1 HETATM 51 H H18 7GB . . . B 2 36.298 -31.203 -1.634 1 95.78 ? H18 7GB 801 A 1 HETATM 52 H H19 7GB . . . B 2 37.233 -31.884 -3.809 1 101.82 ? H19 7GB 801 A 1 HETATM 53 H H20 7GB . . . B 2 39.351 -24.245 -9.356 1 144.6 ? H20 7GB 801 A 1 HETATM 54 H H21 7GB . . . B 2 34.08 -30.735 -10.358 1 90.41 ? H21 7GB 801 A 1 HETATM 55 H H22 7GB . . . B 2 32.76 -29.717 -10.787 1 90.41 ? H22 7GB 801 A 1 HETATM 56 H H23 7GB . . . B 2 37.152 -27.711 -8.18 1 111.8 ? H23 7GB 801 A 1 HETATM 57 H H24 7GB . . . B 2 36.353 -32.586 -8.288 1 97.93 ? H24 7GB 801 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 57 #