data_8FFN # _model_server_result.job_id PdefNt0cDRejIy77JgATqw _model_server_result.datetime_utc '2025-02-18 21:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ffn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 8FFN # _exptl.entry_id 8FFN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 559.525 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FFN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'H28 N14 O2 Ru3' _chem_comp.formula_weight 559.525 _chem_comp.id R2R _chem_comp.mon_nstd_flag . _chem_comp.name 'ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N08 RU3 R2R sing 484 n n N11 RU3 R2R sing 485 n n N10 RU3 R2R sing 486 n n RU3 N09 R2R sing 487 n n RU3 N12 R2R sing 488 n n RU3 O06 R2R sing 489 n n O06 RU2 R2R sing 490 n n N01 RU2 R2R sing 491 n n N05 RU2 R2R sing 492 n n RU2 N04 R2R sing 493 n n RU2 N03 R2R sing 494 n n RU2 O13 R2R sing 495 n n O13 RU1 R2R sing 496 n n N18 RU1 R2R sing 497 n n N16 RU1 R2R sing 498 n n RU1 N17 R2R sing 499 n n RU1 N19 R2R sing 500 n n RU1 N15 R2R sing 501 n n N01 H1 R2R sing 502 n n N01 H2 R2R sing 503 n n N03 H3 R2R sing 504 n n N03 H4 R2R sing 505 n n N04 H5 R2R sing 506 n n N04 H6 R2R sing 507 n n N05 H7 R2R sing 508 n n N05 H8 R2R sing 509 n n N08 H9 R2R sing 510 n n N08 H10 R2R sing 511 n n N09 H11 R2R sing 512 n n N09 H12 R2R sing 513 n n N10 H13 R2R sing 514 n n N10 H14 R2R sing 515 n n N11 H15 R2R sing 516 n n N11 H16 R2R sing 517 n n N12 H17 R2R sing 518 n n N12 H18 R2R sing 519 n n N15 H19 R2R sing 520 n n N15 H20 R2R sing 521 n n N16 H21 R2R sing 522 n n N16 H22 R2R sing 523 n n N17 H23 R2R sing 524 n n N17 H24 R2R sing 525 n n N18 H25 R2R sing 526 n n N18 H26 R2R sing 527 n n N19 H27 R2R sing 528 n n N19 H28 R2R sing 529 n n # _atom_sites.entry_id 8FFN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 R2R A 1 801 701 R2R R2R . F 3 POV A 1 802 701 POV POV . G 3 POV A 1 803 707 POV POV . H 4 ERG A 1 804 708 ERG ERG . I 4 ERG A 1 805 709 ERG ERG . J 3 POV B 1 801 701 POV POV . K 3 POV B 1 802 707 POV POV . L 4 ERG B 1 803 708 ERG ERG . M 4 ERG B 1 804 709 ERG ERG . N 3 POV C 1 801 701 POV POV . O 3 POV C 1 802 707 POV POV . P 4 ERG C 1 803 708 ERG ERG . Q 4 ERG C 1 804 709 ERG ERG . R 3 POV D 1 801 701 POV POV . S 3 POV D 1 802 707 POV POV . T 4 ERG D 1 803 708 ERG ERG . U 4 ERG D 1 804 709 ERG ERG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 R2R . . . E 2 119.509 117.488 97.386 1 103.91 ? N01 R2R 801 A 1 HETATM 2 N N03 R2R . . . E 2 119.534 121.555 97.389 1 103.97 ? N03 R2R 801 A 1 HETATM 3 N N04 R2R . . . E 2 121.555 119.508 97.386 1 102.61 ? N04 R2R 801 A 1 HETATM 4 N N05 R2R . . . E 2 117.488 119.535 97.388 1 104.26 ? N05 R2R 801 A 1 HETATM 5 O O06 R2R . . . E 2 119.521 119.523 95.548 1 108.26 ? O06 R2R 801 A 1 HETATM 6 N N08 R2R . . . E 2 119.523 119.53 91.671 1 101.56 ? N08 R2R 801 A 1 HETATM 7 N N09 R2R . . . E 2 119.761 121.549 93.714 1 107.36 ? N09 R2R 801 A 1 HETATM 8 N N10 R2R . . . E 2 119.281 117.503 93.708 1 105.93 ? N10 R2R 801 A 1 HETATM 9 N N11 R2R . . . E 2 121.545 119.285 93.711 1 106.51 ? N11 R2R 801 A 1 HETATM 10 N N12 R2R . . . E 2 117.497 119.767 93.71 1 107.6 ? N12 R2R 801 A 1 HETATM 11 O O13 R2R . . . E 2 119.522 119.52 99.221 1 104.68 ? O13 R2R 801 A 1 HETATM 12 N N15 R2R . . . E 2 119.522 119.517 103.096 1 94.91 ? N15 R2R 801 A 1 HETATM 13 N N16 R2R . . . E 2 117.49 119.668 101.057 1 101.13 ? N16 R2R 801 A 1 HETATM 14 N N17 R2R . . . E 2 121.554 119.37 101.056 1 107.49 ? N17 R2R 801 A 1 HETATM 15 N N18 R2R . . . E 2 119.374 117.487 101.055 1 103.18 ? N18 R2R 801 A 1 HETATM 16 N N19 R2R . . . E 2 119.672 121.551 101.057 1 101.29 ? N19 R2R 801 A 1 HETATM 17 RU RU2 R2R . . . E 2 119.521 119.521 97.386 1 110.48 ? RU2 R2R 801 A 1 HETATM 18 RU RU3 R2R . . . E 2 119.521 119.526 93.71 1 144.55 ? RU3 R2R 801 A 1 HETATM 19 RU RU1 R2R . . . E 2 119.523 119.519 101.057 1 141.74 ? RU1 R2R 801 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #