data_8FFV # _model_server_result.job_id n2KhtB691C0T9WX9tb_m7Q _model_server_result.datetime_utc '2025-07-07 09:01:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ffv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 8FFV # _exptl.entry_id 8FFV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 392.461 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 50 A ASN 51 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 E O1B ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc3 E O3B ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc4 E O2A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc5 E O3A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc6 B OD1 ASN 50 B ASN 51 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc7 G O1G ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc8 G O1B ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc9 G O2A ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 132 n n C1 C10 DEX sing 133 n n C1 H1 DEX sing 134 n n C2 C3 DEX sing 135 n n C2 H2 DEX sing 136 n n C3 C4 DEX sing 137 n n C3 O1 DEX doub 138 n n C4 C5 DEX doub 139 n n C4 H4 DEX sing 140 n n C5 C6 DEX sing 141 n n C5 C10 DEX sing 142 n n C6 C7 DEX sing 143 n n C6 H61 DEX sing 144 n n C6 H62 DEX sing 145 n n C7 C8 DEX sing 146 n n C7 H71 DEX sing 147 n n C7 H72 DEX sing 148 n n C8 C9 DEX sing 149 n n C8 C14 DEX sing 150 n n C8 H8 DEX sing 151 n n C9 C10 DEX sing 152 n n C9 C11 DEX sing 153 n n C9 F1 DEX sing 154 n n C10 C19 DEX sing 155 n n C11 C12 DEX sing 156 n n C11 O2 DEX sing 157 n n C11 H11 DEX sing 158 n n C12 C13 DEX sing 159 n n C12 H211 DEX sing 160 n n C12 H221 DEX sing 161 n n C13 C14 DEX sing 162 n n C13 C17 DEX sing 163 n n C13 C18 DEX sing 164 n n C14 C15 DEX sing 165 n n C14 H14 DEX sing 166 n n C15 C16 DEX sing 167 n n C15 H511 DEX sing 168 n n C15 H521 DEX sing 169 n n C16 C17 DEX sing 170 n n C16 C22 DEX sing 171 n n C16 H16 DEX sing 172 n n C17 C20 DEX sing 173 n n C17 O3 DEX sing 174 n n C18 H811 DEX sing 175 n n C18 H821 DEX sing 176 n n C18 H831 DEX sing 177 n n C19 H911 DEX sing 178 n n C19 H921 DEX sing 179 n n C19 H931 DEX sing 180 n n C20 C21 DEX sing 181 n n C20 O4 DEX doub 182 n n C21 O5 DEX sing 183 n n C21 H112 DEX sing 184 n n C21 H122 DEX sing 185 n n C22 H212 DEX sing 186 n n C22 H222 DEX sing 187 n n C22 H232 DEX sing 188 n n O2 HO2 DEX sing 189 n n O3 H3 DEX sing 190 n n O5 H5 DEX sing 191 n n # _atom_sites.entry_id 8FFV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ATP A 1 801 801 ATP ATP . F 5 MG A 1 802 802 MG MG . G 4 ATP B 1 801 801 ATP ATP . H 5 MG B 1 802 802 MG MG . I 6 DEX C 1 801 801 DEX DEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . I 6 136.487 164.936 115.857 1 367.33 ? C1 DEX 801 C 1 HETATM 2 C C2 DEX . . . I 6 136.631 165.042 117.2 1 367.61 ? C2 DEX 801 C 1 HETATM 3 C C3 DEX . . . I 6 135.638 164.295 118.102 1 365.39 ? C3 DEX 801 C 1 HETATM 4 C C4 DEX . . . I 6 134.503 163.481 117.467 1 348.25 ? C4 DEX 801 C 1 HETATM 5 C C5 DEX . . . I 6 134.408 163.413 116.112 1 349.05 ? C5 DEX 801 C 1 HETATM 6 C C6 DEX . . . I 6 133.244 162.613 115.555 1 336.01 ? C6 DEX 801 C 1 HETATM 7 C C7 DEX . . . I 6 132.463 163.428 114.498 1 362.09 ? C7 DEX 801 C 1 HETATM 8 C C8 DEX . . . I 6 133.312 164.247 113.481 1 367.52 ? C8 DEX 801 C 1 HETATM 9 C C9 DEX . . . I 6 134.597 164.979 114.05 1 369.44 ? C9 DEX 801 C 1 HETATM 10 C C10 DEX . . . I 6 135.402 164.111 115.117 1 361.55 ? C10 DEX 801 C 1 HETATM 11 C C11 DEX . . . I 6 135.412 165.731 112.942 1 376.59 ? C11 DEX 801 C 1 HETATM 12 C C12 DEX . . . I 6 134.622 166.408 111.775 1 383.36 ? C12 DEX 801 C 1 HETATM 13 C C13 DEX . . . I 6 133.401 165.604 111.203 1 380.63 ? C13 DEX 801 C 1 HETATM 14 C C14 DEX . . . I 6 132.526 165.069 112.405 1 376 ? C14 DEX 801 C 1 HETATM 15 C C15 DEX . . . I 6 131.227 164.578 111.756 1 377.39 ? C15 DEX 801 C 1 HETATM 16 C C16 DEX . . . I 6 130.943 165.64 110.692 1 386.48 ? C16 DEX 801 C 1 HETATM 17 C C17 DEX . . . I 6 132.263 166.443 110.481 1 387.36 ? C17 DEX 801 C 1 HETATM 18 C C18 DEX . . . I 6 134.008 164.51 110.284 1 373.95 ? C18 DEX 801 C 1 HETATM 19 C C19 DEX . . . I 6 136.229 162.966 114.503 1 352.01 ? C19 DEX 801 C 1 HETATM 20 C C20 DEX . . . I 6 132.452 166.891 108.991 1 397.87 ? C20 DEX 801 C 1 HETATM 21 C C21 DEX . . . I 6 133.532 167.883 108.549 1 409.3 ? C21 DEX 801 C 1 HETATM 22 C C22 DEX . . . I 6 129.653 166.396 111.039 1 385.02 ? C22 DEX 801 C 1 HETATM 23 F F1 DEX . . . I 6 134.097 166.064 114.754 1 373.1 ? F1 DEX 801 C 1 HETATM 24 O O1 DEX . . . I 6 135.747 164.359 119.327 1 365.46 ? O1 DEX 801 C 1 HETATM 25 O O2 DEX . . . I 6 136.333 164.831 112.336 1 379.15 ? O2 DEX 801 C 1 HETATM 26 O O3 DEX . . . I 6 132.097 167.668 111.221 1 382.78 ? O3 DEX 801 C 1 HETATM 27 O O4 DEX . . . I 6 131.698 166.476 108.094 1 391.64 ? O4 DEX 801 C 1 HETATM 28 O O5 DEX . . . I 6 134.611 167.283 107.831 1 400.11 ? O5 DEX 801 C 1 HETATM 29 H H14 DEX . . . I 6 132.192 165.929 113.042 1 451.2 ? H14 DEX 801 C 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #