data_8FFW # _model_server_result.job_id nH0TmjTFwcmx2iiasC3NEw _model_server_result.datetime_utc '2024-11-26 03:55:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ffw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 8FFW # _exptl.entry_id 8FFW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 50 A ASN 51 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A OE1 GLN 132 A GLN 133 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 E O2B ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc4 E O2A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc5 E O3A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc6 E O5' ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc7 B OE2 GLU 46 B GLU 47 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc8 B OD1 ASN 50 B ASN 51 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc9 G O1G ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc10 G O1B ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc11 G O2A ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8FFW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ATP A 1 801 801 ATP ATP . F 5 MG A 1 802 802 MG MG . G 4 ATP B 1 801 801 ATP ATP . H 5 MG B 1 802 802 MG MG . I 6 DEX C 1 801 801 DEX DEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 90.601 120.477 132.299 1 76.48 ? PG ATP 801 A 1 HETATM 2 O O1G ATP . . . E 4 91.154 120.485 130.91 1 96.52 ? O1G ATP 801 A 1 HETATM 3 O O2G ATP . . . E 4 91.166 121.547 133.174 1 97.9 ? O2G ATP 801 A 1 HETATM 4 O O3G ATP . . . E 4 90.666 119.131 132.892 1 98.41 ? O3G ATP 801 A 1 HETATM 5 P PB ATP . . . E 4 88.408 121.841 131.317 1 97.68 ? PB ATP 801 A 1 HETATM 6 O O1B ATP . . . E 4 88.854 123.235 131.589 1 107.18 ? O1B ATP 801 A 1 HETATM 7 O O2B ATP . . . E 4 88.451 121.401 129.886 1 102.17 ? O2B ATP 801 A 1 HETATM 8 O O3B ATP . . . E 4 89.039 120.754 132.258 1 95.02 ? O3B ATP 801 A 1 HETATM 9 P PA ATP . . . E 4 85.733 122.841 131.689 1 92.18 ? PA ATP 801 A 1 HETATM 10 O O1A ATP . . . E 4 85.498 123.405 133.053 1 101.52 ? O1A ATP 801 A 1 HETATM 11 O O2A ATP . . . E 4 86.086 123.644 130.5 1 108.21 ? O2A ATP 801 A 1 HETATM 12 O O3A ATP . . . E 4 86.843 121.681 131.665 1 102.65 ? O3A ATP 801 A 1 HETATM 13 O O5' ATP . . . E 4 84.486 122.039 131.117 1 103.17 ? O5' ATP 801 A 1 HETATM 14 C C5' ATP . . . E 4 83.141 122.56 131.21 1 109.48 ? C5' ATP 801 A 1 HETATM 15 C C4' ATP . . . E 4 82.348 122.43 129.885 1 103.65 ? C4' ATP 801 A 1 HETATM 16 O O4' ATP . . . E 4 81.841 123.709 129.514 1 102.17 ? O4' ATP 801 A 1 HETATM 17 C C3' ATP . . . E 4 83.079 121.928 128.658 1 103.33 ? C3' ATP 801 A 1 HETATM 18 O O3' ATP . . . E 4 83.077 120.501 128.605 1 104.98 ? O3' ATP 801 A 1 HETATM 19 C C2' ATP . . . E 4 82.347 122.585 127.498 1 101.46 ? C2' ATP 801 A 1 HETATM 20 O O2' ATP . . . E 4 81.26 121.791 126.992 1 105.39 ? O2' ATP 801 A 1 HETATM 21 C C1' ATP . . . E 4 81.804 123.879 128.099 1 97.81 ? C1' ATP 801 A 1 HETATM 22 N N9 ATP . . . E 4 82.554 125.122 127.697 1 96.03 ? N9 ATP 801 A 1 HETATM 23 C C8 ATP . . . E 4 83.562 125.716 128.369 1 100.06 ? C8 ATP 801 A 1 HETATM 24 N N7 ATP . . . E 4 84.012 126.824 127.732 1 97.64 ? N7 ATP 801 A 1 HETATM 25 C C5 ATP . . . E 4 83.299 126.964 126.621 1 93.92 ? C5 ATP 801 A 1 HETATM 26 C C6 ATP . . . E 4 83.236 127.934 125.459 1 96.54 ? C6 ATP 801 A 1 HETATM 27 N N6 ATP . . . E 4 84.082 128.988 125.382 1 102.53 ? N6 ATP 801 A 1 HETATM 28 N N1 ATP . . . E 4 82.289 127.705 124.475 1 101.18 ? N1 ATP 801 A 1 HETATM 29 C C2 ATP . . . E 4 81.42 126.634 124.517 1 104.24 ? C2 ATP 801 A 1 HETATM 30 N N3 ATP . . . E 4 81.439 125.717 125.541 1 99.22 ? N3 ATP 801 A 1 HETATM 31 C C4 ATP . . . E 4 82.329 125.827 126.599 1 93.13 ? C4 ATP 801 A 1 HETATM 32 H "H5'1" ATP . . . E 4 83.093 123.601 131.562 1 131.38 ? "H5'1" ATP 801 A 1 HETATM 33 H "H5'2" ATP . . . E 4 82.632 121.966 131.974 1 131.38 ? "H5'2" ATP 801 A 1 HETATM 34 H H4' ATP . . . E 4 81.511 121.748 130.069 1 124.38 ? H4' ATP 801 A 1 HETATM 35 H H3' ATP . . . E 4 84.115 122.294 128.664 1 124 ? H3' ATP 801 A 1 HETATM 36 H HO3' ATP . . . E 4 83.552 120.244 127.795 1 125.97 ? HO3' ATP 801 A 1 HETATM 37 H H2' ATP . . . E 4 83.061 122.8 126.691 1 121.75 ? H2' ATP 801 A 1 HETATM 38 H HO2' ATP . . . E 4 80.688 121.528 127.723 1 126.47 ? HO2' ATP 801 A 1 HETATM 39 H H1' ATP . . . E 4 80.748 123.984 127.8 1 117.37 ? H1' ATP 801 A 1 HETATM 40 H H8 ATP . . . E 4 83.965 125.358 129.308 1 120.07 ? H8 ATP 801 A 1 HETATM 41 H HN61 ATP . . . E 4 84.294 129.43 124.472 1 123.04 ? HN61 ATP 801 A 1 HETATM 42 H HN62 ATP . . . E 4 84.649 129.217 126.183 1 123.04 ? HN62 ATP 801 A 1 HETATM 43 H H2 ATP . . . E 4 80.705 126.505 123.717 1 125.08 ? H2 ATP 801 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 81 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 36 _model_server_stats.element_count 43 #