data_8FFW # _model_server_result.job_id Q8gwOJARGJwV8hduJSUPQw _model_server_result.datetime_utc '2024-11-26 03:52:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ffw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 8FFW # _exptl.entry_id 8FFW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 392.461 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 50 A ASN 51 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A OE1 GLN 132 A GLN 133 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 E O2B ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc4 E O2A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc5 E O3A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc6 E O5' ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc7 B OE2 GLU 46 B GLU 47 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc8 B OD1 ASN 50 B ASN 51 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc9 G O1G ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc10 G O1B ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc11 G O2A ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 132 n n C1 C10 DEX sing 133 n n C1 H1 DEX sing 134 n n C2 C3 DEX sing 135 n n C2 H2 DEX sing 136 n n C3 C4 DEX sing 137 n n C3 O1 DEX doub 138 n n C4 C5 DEX doub 139 n n C4 H4 DEX sing 140 n n C5 C6 DEX sing 141 n n C5 C10 DEX sing 142 n n C6 C7 DEX sing 143 n n C6 H61 DEX sing 144 n n C6 H62 DEX sing 145 n n C7 C8 DEX sing 146 n n C7 H71 DEX sing 147 n n C7 H72 DEX sing 148 n n C8 C9 DEX sing 149 n n C8 C14 DEX sing 150 n n C8 H8 DEX sing 151 n n C9 C10 DEX sing 152 n n C9 C11 DEX sing 153 n n C9 F1 DEX sing 154 n n C10 C19 DEX sing 155 n n C11 C12 DEX sing 156 n n C11 O2 DEX sing 157 n n C11 H11 DEX sing 158 n n C12 C13 DEX sing 159 n n C12 H211 DEX sing 160 n n C12 H221 DEX sing 161 n n C13 C14 DEX sing 162 n n C13 C17 DEX sing 163 n n C13 C18 DEX sing 164 n n C14 C15 DEX sing 165 n n C14 H14 DEX sing 166 n n C15 C16 DEX sing 167 n n C15 H511 DEX sing 168 n n C15 H521 DEX sing 169 n n C16 C17 DEX sing 170 n n C16 C22 DEX sing 171 n n C16 H16 DEX sing 172 n n C17 C20 DEX sing 173 n n C17 O3 DEX sing 174 n n C18 H811 DEX sing 175 n n C18 H821 DEX sing 176 n n C18 H831 DEX sing 177 n n C19 H911 DEX sing 178 n n C19 H921 DEX sing 179 n n C19 H931 DEX sing 180 n n C20 C21 DEX sing 181 n n C20 O4 DEX doub 182 n n C21 O5 DEX sing 183 n n C21 H112 DEX sing 184 n n C21 H122 DEX sing 185 n n C22 H212 DEX sing 186 n n C22 H222 DEX sing 187 n n C22 H232 DEX sing 188 n n O2 HO2 DEX sing 189 n n O3 H3 DEX sing 190 n n O5 H5 DEX sing 191 n n # _atom_sites.entry_id 8FFW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ATP A 1 801 801 ATP ATP . F 5 MG A 1 802 802 MG MG . G 4 ATP B 1 801 801 ATP ATP . H 5 MG B 1 802 802 MG MG . I 6 DEX C 1 801 801 DEX DEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . I 6 134.236 163.702 114.434 1 497.9 ? C1 DEX 801 C 1 HETATM 2 C C2 DEX . . . I 6 134.164 163.544 115.778 1 498.91 ? C2 DEX 801 C 1 HETATM 3 C C3 DEX . . . I 6 133.137 162.555 116.348 1 486.12 ? C3 DEX 801 C 1 HETATM 4 C C4 DEX . . . I 6 132.228 161.781 115.39 1 476.7 ? C4 DEX 801 C 1 HETATM 5 C C5 DEX . . . I 6 132.343 161.975 114.049 1 481.11 ? C5 DEX 801 C 1 HETATM 6 C C6 DEX . . . I 6 131.384 161.185 113.169 1 477.71 ? C6 DEX 801 C 1 HETATM 7 C C7 DEX . . . I 6 130.753 162.059 112.058 1 492.55 ? C7 DEX 801 C 1 HETATM 8 C C8 DEX . . . I 6 131.694 163.103 111.391 1 493.92 ? C8 DEX 801 C 1 HETATM 9 C C9 DEX . . . I 6 132.659 163.908 112.354 1 496.23 ? C9 DEX 801 C 1 HETATM 10 C C10 DEX . . . I 6 133.387 162.945 113.382 1 491.63 ? C10 DEX 801 C 1 HETATM 11 C C11 DEX . . . I 6 133.512 165.012 111.648 1 502.83 ? C11 DEX 801 C 1 HETATM 12 C C12 DEX . . . I 6 132.929 165.7 110.384 1 506.8 ? C12 DEX 801 C 1 HETATM 13 C C13 DEX . . . I 6 132.22 164.734 109.385 1 505.76 ? C13 DEX 801 C 1 HETATM 14 C C14 DEX . . . I 6 131.139 163.893 110.17 1 499.56 ? C14 DEX 801 C 1 HETATM 15 C C15 DEX . . . I 6 130.265 163.245 109.084 1 501.24 ? C15 DEX 801 C 1 HETATM 16 C C16 DEX . . . I 6 130.354 164.204 107.888 1 511.94 ? C16 DEX 801 C 1 HETATM 17 C C17 DEX . . . I 6 131.239 165.401 108.343 1 511.27 ? C17 DEX 801 C 1 HETATM 18 C C18 DEX . . . I 6 133.333 163.884 108.692 1 510.23 ? C18 DEX 801 C 1 HETATM 19 C C19 DEX . . . I 6 134.437 162.038 112.712 1 488.59 ? C19 DEX 801 C 1 HETATM 20 C C20 DEX . . . I 6 131.835 166.256 107.167 1 522.42 ? C20 DEX 801 C 1 HETATM 21 C C21 DEX . . . I 6 133.263 166.832 107.177 1 527.72 ? C21 DEX 801 C 1 HETATM 22 C C22 DEX . . . I 6 128.955 164.459 107.327 1 511.42 ? C22 DEX 801 C 1 HETATM 23 F F1 DEX . . . I 6 131.827 164.723 113.099 1 500.33 ? F1 DEX 801 C 1 HETATM 24 O O1 DEX . . . I 6 133.052 162.384 117.559 1 488.17 ? O1 DEX 801 C 1 HETATM 25 O O2 DEX . . . I 6 134.772 164.497 111.25 1 507.7 ? O2 DEX 801 C 1 HETATM 26 O O3 DEX . . . I 6 130.347 166.289 109.048 1 513.26 ? O3 DEX 801 C 1 HETATM 27 O O4 DEX . . . I 6 131.126 166.521 106.171 1 523.67 ? O4 DEX 801 C 1 HETATM 28 O O5 DEX . . . I 6 134.037 166.515 106.017 1 528.72 ? O5 DEX 801 C 1 HETATM 29 H H14 DEX . . . I 6 130.432 164.58 110.701 1 599.47 ? H14 DEX 801 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #