data_8FG3 # _model_server_result.job_id GVev2jWWYihEHGzvrd_qoQ _model_server_result.datetime_utc '2024-11-14 23:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8FG3 # _exptl.entry_id 8FG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FG3 _cell.length_a 39.65 _cell.length_b 39.65 _cell.length_c 157.616 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 8FG3 _atom_sites.fract_transf_matrix[1][1] 0.025221 _atom_sites.fract_transf_matrix[1][2] 0.014561 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 167 GNP GNP . C 3 MG A 1 202 168 MG MG . D 4 HOH A 1 301 247 HOH HOH . D 4 HOH A 2 302 212 HOH HOH . D 4 HOH A 3 303 283 HOH HOH . D 4 HOH A 4 304 259 HOH HOH . D 4 HOH A 5 305 250 HOH HOH . D 4 HOH A 6 306 215 HOH HOH . D 4 HOH A 7 307 252 HOH HOH . D 4 HOH A 8 308 304 HOH HOH . D 4 HOH A 9 309 308 HOH HOH . D 4 HOH A 10 310 281 HOH HOH . D 4 HOH A 11 311 235 HOH HOH . D 4 HOH A 12 312 330 HOH HOH . D 4 HOH A 13 313 277 HOH HOH . D 4 HOH A 14 314 264 HOH HOH . D 4 HOH A 15 315 266 HOH HOH . D 4 HOH A 16 316 222 HOH HOH . D 4 HOH A 17 317 313 HOH HOH . D 4 HOH A 18 318 209 HOH HOH . D 4 HOH A 19 319 324 HOH HOH . D 4 HOH A 20 320 262 HOH HOH . D 4 HOH A 21 321 273 HOH HOH . D 4 HOH A 22 322 298 HOH HOH . D 4 HOH A 23 323 278 HOH HOH . D 4 HOH A 24 324 246 HOH HOH . D 4 HOH A 25 325 317 HOH HOH . D 4 HOH A 26 326 314 HOH HOH . D 4 HOH A 27 327 299 HOH HOH . D 4 HOH A 28 328 316 HOH HOH . D 4 HOH A 29 329 302 HOH HOH . D 4 HOH A 30 330 268 HOH HOH . D 4 HOH A 31 331 320 HOH HOH . D 4 HOH A 32 332 185 HOH HOH . D 4 HOH A 33 333 200 HOH HOH . D 4 HOH A 34 334 178 HOH HOH . D 4 HOH A 35 335 295 HOH HOH . D 4 HOH A 36 336 229 HOH HOH . D 4 HOH A 37 337 180 HOH HOH . D 4 HOH A 38 338 327 HOH HOH . D 4 HOH A 39 339 181 HOH HOH . D 4 HOH A 40 340 201 HOH HOH . D 4 HOH A 41 341 202 HOH HOH . D 4 HOH A 42 342 331 HOH HOH . D 4 HOH A 43 343 305 HOH HOH . D 4 HOH A 44 344 175 HOH HOH . D 4 HOH A 45 345 188 HOH HOH . D 4 HOH A 46 346 193 HOH HOH . D 4 HOH A 47 347 192 HOH HOH . D 4 HOH A 48 348 269 HOH HOH . D 4 HOH A 49 349 321 HOH HOH . D 4 HOH A 50 350 329 HOH HOH . D 4 HOH A 51 351 290 HOH HOH . D 4 HOH A 52 352 176 HOH HOH . D 4 HOH A 53 353 179 HOH HOH . D 4 HOH A 54 354 227 HOH HOH . D 4 HOH A 55 355 242 HOH HOH . D 4 HOH A 56 356 223 HOH HOH . D 4 HOH A 57 357 265 HOH HOH . D 4 HOH A 58 358 230 HOH HOH . D 4 HOH A 59 359 236 HOH HOH . D 4 HOH A 60 360 218 HOH HOH . D 4 HOH A 61 361 169 HOH HOH . D 4 HOH A 62 362 240 HOH HOH . D 4 HOH A 63 363 293 HOH HOH . D 4 HOH A 64 364 174 HOH HOH . D 4 HOH A 65 365 189 HOH HOH . D 4 HOH A 66 366 170 HOH HOH . D 4 HOH A 67 367 205 HOH HOH . D 4 HOH A 68 368 187 HOH HOH . D 4 HOH A 69 369 238 HOH HOH . D 4 HOH A 70 370 172 HOH HOH . D 4 HOH A 71 371 257 HOH HOH . D 4 HOH A 72 372 319 HOH HOH . D 4 HOH A 73 373 214 HOH HOH . D 4 HOH A 74 374 254 HOH HOH . D 4 HOH A 75 375 288 HOH HOH . D 4 HOH A 76 376 272 HOH HOH . D 4 HOH A 77 377 191 HOH HOH . D 4 HOH A 78 378 228 HOH HOH . D 4 HOH A 79 379 315 HOH HOH . D 4 HOH A 80 380 198 HOH HOH . D 4 HOH A 81 381 204 HOH HOH . D 4 HOH A 82 382 208 HOH HOH . D 4 HOH A 83 383 286 HOH HOH . D 4 HOH A 84 384 171 HOH HOH . D 4 HOH A 85 385 231 HOH HOH . D 4 HOH A 86 386 220 HOH HOH . D 4 HOH A 87 387 173 HOH HOH . D 4 HOH A 88 388 182 HOH HOH . D 4 HOH A 89 389 194 HOH HOH . D 4 HOH A 90 390 248 HOH HOH . D 4 HOH A 91 391 287 HOH HOH . D 4 HOH A 92 392 183 HOH HOH . D 4 HOH A 93 393 232 HOH HOH . D 4 HOH A 94 394 241 HOH HOH . D 4 HOH A 95 395 260 HOH HOH . D 4 HOH A 96 396 184 HOH HOH . D 4 HOH A 97 397 285 HOH HOH . D 4 HOH A 98 398 206 HOH HOH . D 4 HOH A 99 399 300 HOH HOH . D 4 HOH A 100 400 275 HOH HOH . D 4 HOH A 101 401 337 HOH HOH . D 4 HOH A 102 402 221 HOH HOH . D 4 HOH A 103 403 334 HOH HOH . D 4 HOH A 104 404 226 HOH HOH . D 4 HOH A 105 405 279 HOH HOH . D 4 HOH A 106 406 195 HOH HOH . D 4 HOH A 107 407 211 HOH HOH . D 4 HOH A 108 408 224 HOH HOH . D 4 HOH A 109 409 216 HOH HOH . D 4 HOH A 110 410 233 HOH HOH . D 4 HOH A 111 411 244 HOH HOH . D 4 HOH A 112 412 186 HOH HOH . D 4 HOH A 113 413 311 HOH HOH . D 4 HOH A 114 414 249 HOH HOH . D 4 HOH A 115 415 177 HOH HOH . D 4 HOH A 116 416 284 HOH HOH . D 4 HOH A 117 417 207 HOH HOH . D 4 HOH A 118 418 197 HOH HOH . D 4 HOH A 119 419 258 HOH HOH . D 4 HOH A 120 420 261 HOH HOH . D 4 HOH A 121 421 328 HOH HOH . D 4 HOH A 122 422 203 HOH HOH . D 4 HOH A 123 423 217 HOH HOH . D 4 HOH A 124 424 309 HOH HOH . D 4 HOH A 125 425 282 HOH HOH . D 4 HOH A 126 426 312 HOH HOH . D 4 HOH A 127 427 253 HOH HOH . D 4 HOH A 128 428 335 HOH HOH . D 4 HOH A 129 429 243 HOH HOH . D 4 HOH A 130 430 296 HOH HOH . D 4 HOH A 131 431 325 HOH HOH . D 4 HOH A 132 432 332 HOH HOH . D 4 HOH A 133 433 307 HOH HOH . D 4 HOH A 134 434 256 HOH HOH . D 4 HOH A 135 435 323 HOH HOH . D 4 HOH A 136 436 270 HOH HOH . D 4 HOH A 137 437 339 HOH HOH . D 4 HOH A 138 438 190 HOH HOH . D 4 HOH A 139 439 263 HOH HOH . D 4 HOH A 140 440 271 HOH HOH . D 4 HOH A 141 441 274 HOH HOH . D 4 HOH A 142 442 289 HOH HOH . D 4 HOH A 143 443 294 HOH HOH . D 4 HOH A 144 444 292 HOH HOH . D 4 HOH A 145 445 210 HOH HOH . D 4 HOH A 146 446 267 HOH HOH . D 4 HOH A 147 447 239 HOH HOH . D 4 HOH A 148 448 291 HOH HOH . D 4 HOH A 149 449 213 HOH HOH . D 4 HOH A 150 450 318 HOH HOH . D 4 HOH A 151 451 225 HOH HOH . D 4 HOH A 152 452 245 HOH HOH . D 4 HOH A 153 453 251 HOH HOH . D 4 HOH A 154 454 310 HOH HOH . D 4 HOH A 155 455 336 HOH HOH . D 4 HOH A 156 456 322 HOH HOH . D 4 HOH A 157 457 219 HOH HOH . D 4 HOH A 158 458 306 HOH HOH . D 4 HOH A 159 459 199 HOH HOH . D 4 HOH A 160 460 297 HOH HOH . D 4 HOH A 161 461 338 HOH HOH . D 4 HOH A 162 462 234 HOH HOH . D 4 HOH A 163 463 196 HOH HOH . D 4 HOH A 164 464 333 HOH HOH . D 4 HOH A 165 465 276 HOH HOH . D 4 HOH A 166 466 326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -24.769 20.202 -4.674 1 12.86 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -25.224 20.374 -3.215 1 13.22 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -25.952 19.981 -5.589 1 14.63 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -23.789 19.021 -4.644 1 14.75 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -23.954 21.614 -5.061 1 11.89 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -23.486 21.994 -6.605 1 11.25 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -22.143 21.349 -6.897 1 12.13 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -24.517 21.736 -7.637 1 11.66 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -23.192 23.581 -6.532 1 11.47 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -24.127 24.768 -7.026 1 12.52 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -24.182 24.725 -8.554 1 12.16 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -25.464 24.633 -6.295 1 15.53 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -23.306 26.032 -6.595 1 12.03 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -22.914 26.238 -5.223 1 13.74 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -22.691 27.716 -4.99 1 12.93 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -21.549 28.173 -5.75 1 14.24 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -23.851 28.625 -5.388 1 17.15 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -23.91 29.749 -4.517 1 19.12 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -23.463 29.059 -6.801 1 16.05 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -24.027 30.309 -7.195 1 17.05 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -21.947 29.188 -6.651 1 16.39 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -21.22 28.977 -7.906 1 14.78 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -21.342 27.9 -8.742 1 13.71 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -20.54 27.972 -9.774 1 10.85 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -19.863 29.165 -9.611 1 13.31 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 -18.852 29.799 -10.421 1 16.05 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 -18.379 29.391 -11.491 1 14.42 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 -18.433 30.996 -9.873 1 15.04 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 -18.907 31.538 -8.706 1 15.6 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 -18.386 32.707 -8.329 1 18.64 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -19.828 30.953 -7.943 1 16.77 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -20.264 29.787 -8.454 1 13.9 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #