data_8FGD # _model_server_result.job_id P-_6TGEAszQJ7QqRYgl-jA _model_server_result.datetime_utc '2024-11-13 08:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 8FGD # _exptl.entry_id 8FGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FGD _cell.length_a 49.16 _cell.length_b 114.703 _cell.length_c 164.447 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -49.16 0 82.2235 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 135 n y N1 C8A H4B sing 136 n y C2 N2 H4B sing 137 n n C2 N3 H4B sing 138 n y N2 HN21 H4B sing 139 n n N2 HN22 H4B sing 140 n n N3 C4 H4B sing 141 n y N3 HN3 H4B sing 142 n n C4 O4 H4B doub 143 n n C4 C4A H4B sing 144 n y C4A C8A H4B doub 145 n y C4A N5 H4B sing 146 n n C8A N8 H4B sing 147 n n N5 C6 H4B sing 148 n n N5 HN5 H4B sing 149 n n N8 C7 H4B sing 150 n n N8 HN8 H4B sing 151 n n C6 C7 H4B sing 152 n n C6 C9 H4B sing 153 n n C6 H6 H4B sing 154 n n C7 H71 H4B sing 155 n n C7 H72 H4B sing 156 n n C9 O9 H4B sing 157 n n C9 C10 H4B sing 158 n n C9 H9 H4B sing 159 n n O9 HO9 H4B sing 160 n n C10 C11 H4B sing 161 n n C10 O10 H4B sing 162 n n C10 H10 H4B sing 163 n n C11 H111 H4B sing 164 n n C11 H112 H4B sing 165 n n C11 H113 H4B sing 166 n n O10 HO0 H4B sing 167 n n # _atom_sites.entry_id 8FGD _atom_sites.fract_transf_matrix[1][1] 0.020342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 XVF A 1 803 800 XVF 8V8 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 34 HOH HOH . G 7 HOH A 2 902 18 HOH HOH . G 7 HOH A 3 903 31 HOH HOH . G 7 HOH A 4 904 36 HOH HOH . G 7 HOH A 5 905 37 HOH HOH . G 7 HOH A 6 906 45 HOH HOH . G 7 HOH A 7 907 23 HOH HOH . G 7 HOH A 8 908 5 HOH HOH . G 7 HOH A 9 909 38 HOH HOH . G 7 HOH A 10 910 13 HOH HOH . G 7 HOH A 11 911 30 HOH HOH . G 7 HOH A 12 912 3 HOH HOH . G 7 HOH A 13 913 19 HOH HOH . G 7 HOH A 14 914 20 HOH HOH . G 7 HOH A 15 915 14 HOH HOH . G 7 HOH A 16 916 41 HOH HOH . G 7 HOH A 17 917 43 HOH HOH . G 7 HOH A 18 918 22 HOH HOH . G 7 HOH A 19 919 6 HOH HOH . G 7 HOH A 20 920 42 HOH HOH . G 7 HOH A 21 921 29 HOH HOH . G 7 HOH A 22 922 40 HOH HOH . G 7 HOH A 23 923 28 HOH HOH . G 7 HOH A 24 924 32 HOH HOH . G 7 HOH A 25 925 2 HOH HOH . G 7 HOH A 26 926 17 HOH HOH . G 7 HOH A 27 927 26 HOH HOH . G 7 HOH A 28 928 33 HOH HOH . G 7 HOH A 29 929 11 HOH HOH . G 7 HOH A 30 930 21 HOH HOH . G 7 HOH A 31 931 46 HOH HOH . G 7 HOH A 32 932 16 HOH HOH . G 7 HOH A 33 933 10 HOH HOH . G 7 HOH A 34 934 8 HOH HOH . G 7 HOH A 35 935 44 HOH HOH . G 7 HOH A 36 936 9 HOH HOH . G 7 HOH A 37 937 12 HOH HOH . G 7 HOH A 38 938 39 HOH HOH . G 7 HOH A 39 939 24 HOH HOH . G 7 HOH A 40 940 35 HOH HOH . G 7 HOH A 41 941 4 HOH HOH . G 7 HOH A 42 942 25 HOH HOH . G 7 HOH A 43 943 1 HOH HOH . G 7 HOH A 44 944 7 HOH HOH . G 7 HOH A 45 945 15 HOH HOH . G 7 HOH A 46 946 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . C 3 -22.099 -3.203 33.825 1 50.88 ? N1 H4B 802 A 1 HETATM 2 C C2 H4B . . . C 3 -22.121 -2.66 32.583 1 48.09 ? C2 H4B 802 A 1 HETATM 3 N N2 H4B . . . C 3 -23.305 -2.287 32.04 1 40.51 ? N2 H4B 802 A 1 HETATM 4 N N3 H4B . . . C 3 -20.975 -2.491 31.879 1 42.9 ? N3 H4B 802 A 1 HETATM 5 C C4 H4B . . . C 3 -19.784 -2.863 32.405 1 46.36 ? C4 H4B 802 A 1 HETATM 6 O O4 H4B . . . C 3 -18.736 -2.704 31.724 1 41.19 ? O4 H4B 802 A 1 HETATM 7 C C4A H4B . . . C 3 -19.744 -3.432 33.682 1 55.91 ? C4A H4B 802 A 1 HETATM 8 C C8A H4B . . . C 3 -20.932 -3.577 34.39 1 53.08 ? C8A H4B 802 A 1 HETATM 9 N N5 H4B . . . C 3 -18.583 -3.82 34.248 1 54.87 ? N5 H4B 802 A 1 HETATM 10 N N8 H4B . . . C 3 -20.95 -4.124 35.64 1 46.21 ? N8 H4B 802 A 1 HETATM 11 C C6 H4B . . . C 3 -18.655 -4.848 35.291 1 52.96 ? C6 H4B 802 A 1 HETATM 12 C C7 H4B . . . C 3 -19.717 -4.495 36.334 1 43.84 ? C7 H4B 802 A 1 HETATM 13 C C9 H4B . . . C 3 -17.318 -5.106 35.986 1 42.21 ? C9 H4B 802 A 1 HETATM 14 O O9 H4B . . . C 3 -16.824 -3.834 36.403 1 41.55 ? O9 H4B 802 A 1 HETATM 15 C C10 H4B . . . C 3 -17.488 -6.014 37.216 1 46.99 ? C10 H4B 802 A 1 HETATM 16 C C11 H4B . . . C 3 -16.175 -6.374 37.908 1 45 ? C11 H4B 802 A 1 HETATM 17 O O10 H4B . . . C 3 -18.112 -7.254 36.872 1 44.81 ? O10 H4B 802 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #