data_8FGD # _model_server_result.job_id gQDmAI80yJAudCdrhNxamw _model_server_result.datetime_utc '2024-11-23 03:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 8FGD # _exptl.entry_id 8FGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.445 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2-{5-[2-(diethylamino)ethyl]-2,3-difluorophenyl}ethyl)-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FGD _cell.length_a 49.16 _cell.length_b 114.703 _cell.length_c 164.447 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -49.16 0 82.2235 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C20 H27 F2 N3' _chem_comp.formula_weight 347.445 _chem_comp.id XVF _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2-{5-[2-(diethylamino)ethyl]-2,3-difluorophenyl}ethyl)-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C04 XVF sing 497 n n C04 C03 XVF doub 498 n y C04 C05 XVF sing 499 n y F15 C15 XVF sing 500 n n C03 C02 XVF sing 501 n y C05 C06 XVF doub 502 n y F16 C16 XVF sing 503 n n C15 C16 XVF doub 504 n y C15 C14 XVF sing 505 n y C02 N02 XVF sing 506 n n C02 N01 XVF doub 507 n y C16 C11 XVF sing 508 n y C06 N01 XVF sing 509 n y C06 C08 XVF sing 510 n n C14 C13 XVF doub 511 n y C08 C09 XVF sing 512 n n C11 C09 XVF sing 513 n n C11 C12 XVF doub 514 n y C13 C12 XVF sing 515 n y C13 C17 XVF sing 516 n n C23 C22 XVF sing 517 n n C17 C18 XVF sing 518 n n C22 N19 XVF sing 519 n n C18 N19 XVF sing 520 n n N19 C20 XVF sing 521 n n C20 C21 XVF sing 522 n n C12 H1 XVF sing 523 n n C14 H2 XVF sing 524 n n C03 H3 XVF sing 525 n n C05 H4 XVF sing 526 n n C07 H5 XVF sing 527 n n C07 H6 XVF sing 528 n n C07 H7 XVF sing 529 n n C08 H8 XVF sing 530 n n C08 H9 XVF sing 531 n n C09 H10 XVF sing 532 n n C09 H11 XVF sing 533 n n C17 H12 XVF sing 534 n n C17 H13 XVF sing 535 n n C18 H14 XVF sing 536 n n C18 H15 XVF sing 537 n n C20 H16 XVF sing 538 n n C20 H17 XVF sing 539 n n C21 H18 XVF sing 540 n n C21 H19 XVF sing 541 n n C21 H20 XVF sing 542 n n C22 H21 XVF sing 543 n n C22 H22 XVF sing 544 n n C23 H23 XVF sing 545 n n C23 H24 XVF sing 546 n n C23 H25 XVF sing 547 n n N02 H26 XVF sing 548 n n N02 H27 XVF sing 549 n n # _atom_sites.entry_id 8FGD _atom_sites.fract_transf_matrix[1][1] 0.020342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 XVF A 1 803 800 XVF 8V8 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 34 HOH HOH . G 7 HOH A 2 902 18 HOH HOH . G 7 HOH A 3 903 31 HOH HOH . G 7 HOH A 4 904 36 HOH HOH . G 7 HOH A 5 905 37 HOH HOH . G 7 HOH A 6 906 45 HOH HOH . G 7 HOH A 7 907 23 HOH HOH . G 7 HOH A 8 908 5 HOH HOH . G 7 HOH A 9 909 38 HOH HOH . G 7 HOH A 10 910 13 HOH HOH . G 7 HOH A 11 911 30 HOH HOH . G 7 HOH A 12 912 3 HOH HOH . G 7 HOH A 13 913 19 HOH HOH . G 7 HOH A 14 914 20 HOH HOH . G 7 HOH A 15 915 14 HOH HOH . G 7 HOH A 16 916 41 HOH HOH . G 7 HOH A 17 917 43 HOH HOH . G 7 HOH A 18 918 22 HOH HOH . G 7 HOH A 19 919 6 HOH HOH . G 7 HOH A 20 920 42 HOH HOH . G 7 HOH A 21 921 29 HOH HOH . G 7 HOH A 22 922 40 HOH HOH . G 7 HOH A 23 923 28 HOH HOH . G 7 HOH A 24 924 32 HOH HOH . G 7 HOH A 25 925 2 HOH HOH . G 7 HOH A 26 926 17 HOH HOH . G 7 HOH A 27 927 26 HOH HOH . G 7 HOH A 28 928 33 HOH HOH . G 7 HOH A 29 929 11 HOH HOH . G 7 HOH A 30 930 21 HOH HOH . G 7 HOH A 31 931 46 HOH HOH . G 7 HOH A 32 932 16 HOH HOH . G 7 HOH A 33 933 10 HOH HOH . G 7 HOH A 34 934 8 HOH HOH . G 7 HOH A 35 935 44 HOH HOH . G 7 HOH A 36 936 9 HOH HOH . G 7 HOH A 37 937 12 HOH HOH . G 7 HOH A 38 938 39 HOH HOH . G 7 HOH A 39 939 24 HOH HOH . G 7 HOH A 40 940 35 HOH HOH . G 7 HOH A 41 941 4 HOH HOH . G 7 HOH A 42 942 25 HOH HOH . G 7 HOH A 43 943 1 HOH HOH . G 7 HOH A 44 944 7 HOH HOH . G 7 HOH A 45 945 15 HOH HOH . G 7 HOH A 46 946 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 XVF . . . D 4 -21.637 -2.978 24.708 1 80.64 ? C11 XVF 803 A 1 HETATM 2 C C12 XVF . . . D 4 -20.413 -3.374 25.262 1 74.41 ? C12 XVF 803 A 1 HETATM 3 C C14 XVF . . . D 4 -20.867 -5.678 24.654 1 89.75 ? C14 XVF 803 A 1 HETATM 4 C C16 XVF . . . D 4 -22.511 -4.021 24.101 1 91.89 ? C16 XVF 803 A 1 HETATM 5 C C02 XVF . . . D 4 -25.811 0.225 23.179 1 47.31 ? C02 XVF 803 A 1 HETATM 6 C C03 XVF . . . D 4 -26.314 -0.498 22.087 1 43.38 ? C03 XVF 803 A 1 HETATM 7 C C04 XVF . . . D 4 -25.459 -1.367 21.427 1 42.94 ? C04 XVF 803 A 1 HETATM 8 C C05 XVF . . . D 4 -24.14 -1.494 21.844 1 50.89 ? C05 XVF 803 A 1 HETATM 9 C C06 XVF . . . D 4 -23.677 -0.763 22.941 1 57.53 ? C06 XVF 803 A 1 HETATM 10 C C07 XVF . . . D 4 -25.946 -2.177 20.242 1 40.96 ? C07 XVF 803 A 1 HETATM 11 C C08 XVF . . . D 4 -22.228 -0.915 23.353 1 62.84 ? C08 XVF 803 A 1 HETATM 12 C C09 XVF . . . D 4 -22.077 -1.524 24.733 1 72.68 ? C09 XVF 803 A 1 HETATM 13 C C13 XVF . . . D 4 -20.037 -4.719 25.225 1 81.56 ? C13 XVF 803 A 1 HETATM 14 C C15 XVF . . . D 4 -22.09 -5.338 24.093 1 95.64 ? C15 XVF 803 A 1 HETATM 15 C C17 XVF . . . D 4 -18.735 -5.223 25.801 1 82.68 ? C17 XVF 803 A 1 HETATM 16 C C18 XVF . . . D 4 -17.791 -4.13 26.291 1 83.03 ? C18 XVF 803 A 1 HETATM 17 C C20 XVF . . . D 4 -16.563 -5.994 27.304 1 87.69 ? C20 XVF 803 A 1 HETATM 18 C C21 XVF . . . D 4 -15.457 -6.099 26.266 1 89.56 ? C21 XVF 803 A 1 HETATM 19 C C22 XVF . . . D 4 -15.994 -3.687 27.844 1 81.27 ? C22 XVF 803 A 1 HETATM 20 C C23 XVF . . . D 4 -15.377 -4.126 29.154 1 79.94 ? C23 XVF 803 A 1 HETATM 21 F F15 XVF . . . D 4 -22.862 -6.292 23.541 1 98.57 ? F15 XVF 803 A 1 HETATM 22 F F16 XVF . . . D 4 -23.701 -3.709 23.563 1 95.77 ? F16 XVF 803 A 1 HETATM 23 N N01 XVF . . . D 4 -24.519 0.083 23.58 1 45.8 ? N01 XVF 803 A 1 HETATM 24 N N02 XVF . . . D 4 -26.643 1.082 23.81 1 49.17 ? N02 XVF 803 A 1 HETATM 25 N N19 XVF . . . D 4 -17.079 -4.616 27.488 1 83.12 ? N19 XVF 803 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #