data_8FGE # _model_server_result.job_id LeqYBN8O26W2pAhCzDNrgg _model_server_result.datetime_utc '2024-11-27 18:20:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 8FGE # _exptl.entry_id 8FGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FGE _cell.length_a 48.953 _cell.length_b 113.846 _cell.length_c 163.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -48.953 0 81.815 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 8FGE _atom_sites.fract_transf_matrix[1][1] 0.020428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 XVA A 1 803 800 XVA 1V6 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 70 HOH HOH . G 7 HOH A 2 902 79 HOH HOH . G 7 HOH A 3 903 68 HOH HOH . G 7 HOH A 4 904 37 HOH HOH . G 7 HOH A 5 905 80 HOH HOH . G 7 HOH A 6 906 63 HOH HOH . G 7 HOH A 7 907 53 HOH HOH . G 7 HOH A 8 908 57 HOH HOH . G 7 HOH A 9 909 1 HOH HOH . G 7 HOH A 10 910 47 HOH HOH . G 7 HOH A 11 911 75 HOH HOH . G 7 HOH A 12 912 7 HOH HOH . G 7 HOH A 13 913 71 HOH HOH . G 7 HOH A 14 914 4 HOH HOH . G 7 HOH A 15 915 81 HOH HOH . G 7 HOH A 16 916 58 HOH HOH . G 7 HOH A 17 917 48 HOH HOH . G 7 HOH A 18 918 3 HOH HOH . G 7 HOH A 19 919 64 HOH HOH . G 7 HOH A 20 920 82 HOH HOH . G 7 HOH A 21 921 32 HOH HOH . G 7 HOH A 22 922 11 HOH HOH . G 7 HOH A 23 923 38 HOH HOH . G 7 HOH A 24 924 44 HOH HOH . G 7 HOH A 25 925 23 HOH HOH . G 7 HOH A 26 926 28 HOH HOH . G 7 HOH A 27 927 20 HOH HOH . G 7 HOH A 28 928 22 HOH HOH . G 7 HOH A 29 929 12 HOH HOH . G 7 HOH A 30 930 52 HOH HOH . G 7 HOH A 31 931 30 HOH HOH . G 7 HOH A 32 932 49 HOH HOH . G 7 HOH A 33 933 74 HOH HOH . G 7 HOH A 34 934 5 HOH HOH . G 7 HOH A 35 935 27 HOH HOH . G 7 HOH A 36 936 2 HOH HOH . G 7 HOH A 37 937 35 HOH HOH . G 7 HOH A 38 938 6 HOH HOH . G 7 HOH A 39 939 24 HOH HOH . G 7 HOH A 40 940 14 HOH HOH . G 7 HOH A 41 941 73 HOH HOH . G 7 HOH A 42 942 8 HOH HOH . G 7 HOH A 43 943 50 HOH HOH . G 7 HOH A 44 944 41 HOH HOH . G 7 HOH A 45 945 45 HOH HOH . G 7 HOH A 46 946 17 HOH HOH . G 7 HOH A 47 947 13 HOH HOH . G 7 HOH A 48 948 42 HOH HOH . G 7 HOH A 49 949 60 HOH HOH . G 7 HOH A 50 950 34 HOH HOH . G 7 HOH A 51 951 46 HOH HOH . G 7 HOH A 52 952 51 HOH HOH . G 7 HOH A 53 953 21 HOH HOH . G 7 HOH A 54 954 26 HOH HOH . G 7 HOH A 55 955 16 HOH HOH . G 7 HOH A 56 956 65 HOH HOH . G 7 HOH A 57 957 72 HOH HOH . G 7 HOH A 58 958 19 HOH HOH . G 7 HOH A 59 959 40 HOH HOH . G 7 HOH A 60 960 39 HOH HOH . G 7 HOH A 61 961 18 HOH HOH . G 7 HOH A 62 962 83 HOH HOH . G 7 HOH A 63 963 78 HOH HOH . G 7 HOH A 64 964 61 HOH HOH . G 7 HOH A 65 965 15 HOH HOH . G 7 HOH A 66 966 36 HOH HOH . G 7 HOH A 67 967 59 HOH HOH . G 7 HOH A 68 968 9 HOH HOH . G 7 HOH A 69 969 76 HOH HOH . G 7 HOH A 70 970 56 HOH HOH . G 7 HOH A 71 971 67 HOH HOH . G 7 HOH A 72 972 29 HOH HOH . G 7 HOH A 73 973 43 HOH HOH . G 7 HOH A 74 974 10 HOH HOH . G 7 HOH A 75 975 69 HOH HOH . G 7 HOH A 76 976 31 HOH HOH . G 7 HOH A 77 977 54 HOH HOH . G 7 HOH A 78 978 66 HOH HOH . G 7 HOH A 79 979 55 HOH HOH . G 7 HOH A 80 980 33 HOH HOH . G 7 HOH A 81 981 77 HOH HOH . G 7 HOH A 82 982 62 HOH HOH . G 7 HOH A 83 983 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -25.312 -4.702 26.485 1 49.24 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . B 2 -28.04 -0.731 25.943 1 42.38 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . B 2 -29.335 -2.355 21.528 1 52.92 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . B 2 -26.992 -6.494 22.297 1 33.38 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . B 2 -25.822 -3.436 26.698 1 51.48 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . B 2 -25.452 -2.485 27.739 1 51.48 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . B 2 -26.208 -1.388 27.586 1 50.52 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . B 2 -27.096 -1.596 26.459 1 44.51 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . B 2 -26.149 -0.123 28.478 1 47.94 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . B 2 -24.395 -2.666 28.845 1 53.85 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . B 2 -23.046 -3.182 28.376 1 56.09 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . B 2 -22.055 -2.053 28.479 1 52.8 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . B 2 -22.25 -1.192 29.365 1 46.75 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . B 2 -21.081 -1.994 27.694 1 49.56 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . B 2 -28.642 -0.835 24.7 1 53.16 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . B 2 -29.552 0.14 24.113 1 46.35 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . B 2 -29.923 -0.313 22.92 1 54.98 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . B 2 -29.241 -1.582 22.676 1 53.72 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . B 2 -30.047 1.454 24.77 1 48.77 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . B 2 -30.892 0.448 21.99 1 59.15 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . B 2 -31.628 -0.172 21.07 1 62.01 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . B 2 -28.806 -3.607 21.328 1 47.37 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . B 2 -28.939 -4.424 20.131 1 47.81 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . B 2 -28.284 -5.588 20.352 1 41.4 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . B 2 -27.732 -5.521 21.69 1 41.56 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . B 2 -29.713 -3.951 18.873 1 43.25 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . B 2 -28.102 -6.833 19.455 1 47.5 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . B 2 -28.68 -6.949 18.253 1 46.58 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . B 2 -26.344 -6.381 23.502 1 43.12 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . B 2 -25.544 -7.4 24.12 1 42.93 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . B 2 -25.063 -6.911 25.285 1 39.77 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . B 2 -25.565 -5.561 25.425 1 41.74 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . B 2 -25.309 -8.803 23.53 1 46.04 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . B 2 -24.205 -7.671 26.335 1 47.75 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . B 2 -22.706 -7.88 26.138 1 56.83 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . B 2 -22.251 -8.942 27.132 1 61.65 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . B 2 -21.277 -8.671 27.882 1 62.7 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . B 2 -22.844 -10.071 27.204 1 55.49 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . B 2 -26.816 -2.851 25.964 1 46.9 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . B 2 -28.475 -1.872 23.792 1 47.92 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . B 2 -28.066 -4.305 22.238 1 42.67 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . B 2 -26.34 -5.263 24.322 1 41.83 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . B 2 -27.759 -3.772 24.296 1 45.05 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #