data_8FGE # _model_server_result.job_id VIfUiybhPes3agYyQ_k06Q _model_server_result.datetime_utc '2024-11-14 08:01:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 8FGE # _exptl.entry_id 8FGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.373 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(difluoromethyl)-6-(2-{5-[2-(dimethylamino)ethyl]-2,3-difluorophenyl}ethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FGE _cell.length_a 48.953 _cell.length_b 113.846 _cell.length_c 163.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -48.953 0 81.815 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C18 H21 F4 N3' _chem_comp.formula_weight 355.373 _chem_comp.id XVA _chem_comp.mon_nstd_flag . _chem_comp.name 4-(difluoromethyl)-6-(2-{5-[2-(dimethylamino)ethyl]-2,3-difluorophenyl}ethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F09 C07 XVA sing 497 n n F08 C07 XVA sing 498 n n C07 C04 XVA sing 499 n n C04 C03 XVA doub 500 n y C04 C05 XVA sing 501 n y C03 C02 XVA sing 502 n y F12 C12 XVA sing 503 n n C05 C06 XVA doub 504 n y F13 C13 XVA sing 505 n n C12 C13 XVA doub 506 n y C12 C11 XVA sing 507 n y C02 N02 XVA sing 508 n n C02 N01 XVA doub 509 n y C22 C11 XVA sing 510 n n C22 C21 XVA sing 511 n n C06 N01 XVA sing 512 n y C06 C21 XVA sing 513 n n C13 C14 XVA sing 514 n y C11 C16 XVA doub 515 n y C14 C15 XVA doub 516 n y C16 C15 XVA sing 517 n y C15 C23 XVA sing 518 n n C24 C23 XVA sing 519 n n C24 N25 XVA sing 520 n n C26 N25 XVA sing 521 n n N25 C27 XVA sing 522 n n C03 H1 XVA sing 523 n n C05 H2 XVA sing 524 n n C07 H3 XVA sing 525 n n C14 H4 XVA sing 526 n n C16 H5 XVA sing 527 n n C21 H6 XVA sing 528 n n C21 H7 XVA sing 529 n n C22 H8 XVA sing 530 n n C22 H9 XVA sing 531 n n C23 H10 XVA sing 532 n n C23 H11 XVA sing 533 n n C24 H12 XVA sing 534 n n C24 H13 XVA sing 535 n n C26 H14 XVA sing 536 n n C26 H15 XVA sing 537 n n C26 H16 XVA sing 538 n n C27 H17 XVA sing 539 n n C27 H18 XVA sing 540 n n C27 H19 XVA sing 541 n n N02 H20 XVA sing 542 n n N02 H21 XVA sing 543 n n # _atom_sites.entry_id 8FGE _atom_sites.fract_transf_matrix[1][1] 0.020428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 XVA A 1 803 800 XVA 1V6 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 70 HOH HOH . G 7 HOH A 2 902 79 HOH HOH . G 7 HOH A 3 903 68 HOH HOH . G 7 HOH A 4 904 37 HOH HOH . G 7 HOH A 5 905 80 HOH HOH . G 7 HOH A 6 906 63 HOH HOH . G 7 HOH A 7 907 53 HOH HOH . G 7 HOH A 8 908 57 HOH HOH . G 7 HOH A 9 909 1 HOH HOH . G 7 HOH A 10 910 47 HOH HOH . G 7 HOH A 11 911 75 HOH HOH . G 7 HOH A 12 912 7 HOH HOH . G 7 HOH A 13 913 71 HOH HOH . G 7 HOH A 14 914 4 HOH HOH . G 7 HOH A 15 915 81 HOH HOH . G 7 HOH A 16 916 58 HOH HOH . G 7 HOH A 17 917 48 HOH HOH . G 7 HOH A 18 918 3 HOH HOH . G 7 HOH A 19 919 64 HOH HOH . G 7 HOH A 20 920 82 HOH HOH . G 7 HOH A 21 921 32 HOH HOH . G 7 HOH A 22 922 11 HOH HOH . G 7 HOH A 23 923 38 HOH HOH . G 7 HOH A 24 924 44 HOH HOH . G 7 HOH A 25 925 23 HOH HOH . G 7 HOH A 26 926 28 HOH HOH . G 7 HOH A 27 927 20 HOH HOH . G 7 HOH A 28 928 22 HOH HOH . G 7 HOH A 29 929 12 HOH HOH . G 7 HOH A 30 930 52 HOH HOH . G 7 HOH A 31 931 30 HOH HOH . G 7 HOH A 32 932 49 HOH HOH . G 7 HOH A 33 933 74 HOH HOH . G 7 HOH A 34 934 5 HOH HOH . G 7 HOH A 35 935 27 HOH HOH . G 7 HOH A 36 936 2 HOH HOH . G 7 HOH A 37 937 35 HOH HOH . G 7 HOH A 38 938 6 HOH HOH . G 7 HOH A 39 939 24 HOH HOH . G 7 HOH A 40 940 14 HOH HOH . G 7 HOH A 41 941 73 HOH HOH . G 7 HOH A 42 942 8 HOH HOH . G 7 HOH A 43 943 50 HOH HOH . G 7 HOH A 44 944 41 HOH HOH . G 7 HOH A 45 945 45 HOH HOH . G 7 HOH A 46 946 17 HOH HOH . G 7 HOH A 47 947 13 HOH HOH . G 7 HOH A 48 948 42 HOH HOH . G 7 HOH A 49 949 60 HOH HOH . G 7 HOH A 50 950 34 HOH HOH . G 7 HOH A 51 951 46 HOH HOH . G 7 HOH A 52 952 51 HOH HOH . G 7 HOH A 53 953 21 HOH HOH . G 7 HOH A 54 954 26 HOH HOH . G 7 HOH A 55 955 16 HOH HOH . G 7 HOH A 56 956 65 HOH HOH . G 7 HOH A 57 957 72 HOH HOH . G 7 HOH A 58 958 19 HOH HOH . G 7 HOH A 59 959 40 HOH HOH . G 7 HOH A 60 960 39 HOH HOH . G 7 HOH A 61 961 18 HOH HOH . G 7 HOH A 62 962 83 HOH HOH . G 7 HOH A 63 963 78 HOH HOH . G 7 HOH A 64 964 61 HOH HOH . G 7 HOH A 65 965 15 HOH HOH . G 7 HOH A 66 966 36 HOH HOH . G 7 HOH A 67 967 59 HOH HOH . G 7 HOH A 68 968 9 HOH HOH . G 7 HOH A 69 969 76 HOH HOH . G 7 HOH A 70 970 56 HOH HOH . G 7 HOH A 71 971 67 HOH HOH . G 7 HOH A 72 972 29 HOH HOH . G 7 HOH A 73 973 43 HOH HOH . G 7 HOH A 74 974 10 HOH HOH . G 7 HOH A 75 975 69 HOH HOH . G 7 HOH A 76 976 31 HOH HOH . G 7 HOH A 77 977 54 HOH HOH . G 7 HOH A 78 978 66 HOH HOH . G 7 HOH A 79 979 55 HOH HOH . G 7 HOH A 80 980 33 HOH HOH . G 7 HOH A 81 981 77 HOH HOH . G 7 HOH A 82 982 62 HOH HOH . G 7 HOH A 83 983 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 XVA . . . D 4 -25.646 0.228 23.203 1 49.22 ? C02 XVA 803 A 1 HETATM 2 C C03 XVA . . . D 4 -26.09 -0.565 22.141 1 48.27 ? C03 XVA 803 A 1 HETATM 3 C C04 XVA . . . D 4 -25.259 -1.57 21.666 1 53.65 ? C04 XVA 803 A 1 HETATM 4 C C05 XVA . . . D 4 -24.011 -1.77 22.241 1 58.19 ? C05 XVA 803 A 1 HETATM 5 C C06 XVA . . . D 4 -23.603 -0.953 23.289 1 65.77 ? C06 XVA 803 A 1 HETATM 6 C C07 XVA . . . D 4 -25.665 -2.442 20.535 1 50.4 ? C07 XVA 803 A 1 HETATM 7 C C11 XVA . . . D 4 -21.507 -3.438 24.785 1 93.3 ? C11 XVA 803 A 1 HETATM 8 C C12 XVA . . . D 4 -22.049 -4.556 24.183 1 106.75 ? C12 XVA 803 A 1 HETATM 9 C C13 XVA . . . D 4 -21.274 -5.69 23.998 1 114.97 ? C13 XVA 803 A 1 HETATM 10 C C14 XVA . . . D 4 -19.951 -5.714 24.429 1 110.27 ? C14 XVA 803 A 1 HETATM 11 C C15 XVA . . . D 4 -19.404 -4.6 25.052 1 100.82 ? C15 XVA 803 A 1 HETATM 12 C C16 XVA . . . D 4 -20.182 -3.457 25.227 1 93.5 ? C16 XVA 803 A 1 HETATM 13 C C21 XVA . . . D 4 -22.243 -1.171 23.905 1 73.2 ? C21 XVA 803 A 1 HETATM 14 C C22 XVA . . . D 4 -22.41 -2.238 24.97 1 80.55 ? C22 XVA 803 A 1 HETATM 15 C C23 XVA . . . D 4 -17.959 -4.641 25.495 1 97.08 ? C23 XVA 803 A 1 HETATM 16 C C24 XVA . . . D 4 -17.799 -4.964 26.975 1 91.51 ? C24 XVA 803 A 1 HETATM 17 C C26 XVA . . . D 4 -16.442 -4.478 28.902 1 86.7 ? C26 XVA 803 A 1 HETATM 18 C C27 XVA . . . D 4 -15.529 -4.165 26.71 1 93.11 ? C27 XVA 803 A 1 HETATM 19 F F08 XVA . . . D 4 -26.65 -1.832 19.809 1 46.67 ? F08 XVA 803 A 1 HETATM 20 F F09 XVA . . . D 4 -24.549 -2.612 19.759 1 48.68 ? F09 XVA 803 A 1 HETATM 21 F F12 XVA . . . D 4 -23.33 -4.52 23.764 1 105.18 ? F12 XVA 803 A 1 HETATM 22 F F13 XVA . . . D 4 -21.801 -6.774 23.402 1 121.63 ? F13 XVA 803 A 1 HETATM 23 N N01 XVA . . . D 4 -24.425 0.018 23.742 1 50.59 ? N01 XVA 803 A 1 HETATM 24 N N02 XVA . . . D 4 -26.435 1.215 23.678 1 50.72 ? N02 XVA 803 A 1 HETATM 25 N N25 XVA . . . D 4 -16.753 -4.085 27.525 1 91.07 ? N25 XVA 803 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #