data_8FHF # _model_server_result.job_id 1dmcvctJRTbwneiJ09WMQg _model_server_result.datetime_utc '2024-11-24 01:39:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8FHF # _exptl.entry_id 8FHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.238 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'nonanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.51 _cell.angle_gamma 90 _cell.entry_id 8FHF _cell.length_a 91.635 _cell.length_b 60.695 _cell.length_c 117.076 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 83 A CYS 285 1_555 C C18 XZK . A XZK 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? covale ? covale2 B SG CYS 83 B CYS 285 1_555 E C18 XZK . B XZK 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? # _chem_comp.formula 'C9 H18 O2' _chem_comp.formula_weight 158.238 _chem_comp.id KNA _chem_comp.mon_nstd_flag . _chem_comp.name 'nonanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 KNA doub 173 n n C1 C2 KNA sing 174 n n C1 O1 KNA sing 175 n n O1 HO1 KNA sing 176 n n C3 C2 KNA sing 177 n n C2 H2 KNA sing 178 n n C2 H2A KNA sing 179 n n C3 C4 KNA sing 180 n n C3 H3 KNA sing 181 n n C3 H3A KNA sing 182 n n C5 C4 KNA sing 183 n n C4 H4 KNA sing 184 n n C4 H4A KNA sing 185 n n C5 C6 KNA sing 186 n n C5 H5 KNA sing 187 n n C5 H5A KNA sing 188 n n C6 C7 KNA sing 189 n n C6 H6 KNA sing 190 n n C6 H6A KNA sing 191 n n C7 C8 KNA sing 192 n n C7 H7 KNA sing 193 n n C7 H7A KNA sing 194 n n C8 C9 KNA sing 195 n n C8 H8 KNA sing 196 n n C8 H8A KNA sing 197 n n C9 H9 KNA sing 198 n n C9 H9A KNA sing 199 n n C9 H9B KNA sing 200 n n # _atom_sites.entry_id 8FHF _atom_sites.fract_transf_matrix[1][1] 0.010913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002421 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XZK A 1 501 501 XZK LIG . D 3 KNA A 1 502 502 KNA KNA . E 2 XZK B 1 501 501 XZK LIG . F 3 KNA B 1 502 502 KNA KNA . G 4 HOH A 1 601 199 HOH HOH . G 4 HOH A 2 602 8 HOH HOH . G 4 HOH A 3 603 118 HOH HOH . G 4 HOH A 4 604 175 HOH HOH . G 4 HOH A 5 605 66 HOH HOH . G 4 HOH A 6 606 26 HOH HOH . G 4 HOH A 7 607 214 HOH HOH . G 4 HOH A 8 608 21 HOH HOH . G 4 HOH A 9 609 99 HOH HOH . G 4 HOH A 10 610 19 HOH HOH . G 4 HOH A 11 611 24 HOH HOH . G 4 HOH A 12 612 82 HOH HOH . G 4 HOH A 13 613 211 HOH HOH . G 4 HOH A 14 614 52 HOH HOH . G 4 HOH A 15 615 148 HOH HOH . G 4 HOH A 16 616 102 HOH HOH . G 4 HOH A 17 617 166 HOH HOH . G 4 HOH A 18 618 3 HOH HOH . G 4 HOH A 19 619 62 HOH HOH . G 4 HOH A 20 620 228 HOH HOH . G 4 HOH A 21 621 32 HOH HOH . G 4 HOH A 22 622 218 HOH HOH . G 4 HOH A 23 623 190 HOH HOH . G 4 HOH A 24 624 105 HOH HOH . G 4 HOH A 25 625 120 HOH HOH . G 4 HOH A 26 626 137 HOH HOH . G 4 HOH A 27 627 103 HOH HOH . G 4 HOH A 28 628 34 HOH HOH . G 4 HOH A 29 629 10 HOH HOH . G 4 HOH A 30 630 91 HOH HOH . G 4 HOH A 31 631 75 HOH HOH . G 4 HOH A 32 632 234 HOH HOH . G 4 HOH A 33 633 33 HOH HOH . G 4 HOH A 34 634 38 HOH HOH . G 4 HOH A 35 635 129 HOH HOH . G 4 HOH A 36 636 251 HOH HOH . G 4 HOH A 37 637 80 HOH HOH . G 4 HOH A 38 638 238 HOH HOH . G 4 HOH A 39 639 112 HOH HOH . G 4 HOH A 40 640 115 HOH HOH . G 4 HOH A 41 641 2 HOH HOH . G 4 HOH A 42 642 9 HOH HOH . G 4 HOH A 43 643 56 HOH HOH . G 4 HOH A 44 644 186 HOH HOH . G 4 HOH A 45 645 204 HOH HOH . G 4 HOH A 46 646 183 HOH HOH . G 4 HOH A 47 647 229 HOH HOH . G 4 HOH A 48 648 167 HOH HOH . G 4 HOH A 49 649 5 HOH HOH . G 4 HOH A 50 650 106 HOH HOH . G 4 HOH A 51 651 11 HOH HOH . G 4 HOH A 52 652 122 HOH HOH . G 4 HOH A 53 653 117 HOH HOH . G 4 HOH A 54 654 134 HOH HOH . G 4 HOH A 55 655 61 HOH HOH . G 4 HOH A 56 656 98 HOH HOH . G 4 HOH A 57 657 17 HOH HOH . G 4 HOH A 58 658 6 HOH HOH . G 4 HOH A 59 659 85 HOH HOH . G 4 HOH A 60 660 247 HOH HOH . G 4 HOH A 61 661 259 HOH HOH . G 4 HOH A 62 662 128 HOH HOH . G 4 HOH A 63 663 138 HOH HOH . G 4 HOH A 64 664 126 HOH HOH . G 4 HOH A 65 665 162 HOH HOH . G 4 HOH A 66 666 18 HOH HOH . G 4 HOH A 67 667 28 HOH HOH . G 4 HOH A 68 668 191 HOH HOH . G 4 HOH A 69 669 123 HOH HOH . G 4 HOH A 70 670 14 HOH HOH . G 4 HOH A 71 671 70 HOH HOH . G 4 HOH A 72 672 176 HOH HOH . G 4 HOH A 73 673 262 HOH HOH . G 4 HOH A 74 674 113 HOH HOH . G 4 HOH A 75 675 51 HOH HOH . G 4 HOH A 76 676 97 HOH HOH . G 4 HOH A 77 677 189 HOH HOH . G 4 HOH A 78 678 67 HOH HOH . G 4 HOH A 79 679 165 HOH HOH . G 4 HOH A 80 680 46 HOH HOH . G 4 HOH A 81 681 230 HOH HOH . G 4 HOH A 82 682 197 HOH HOH . G 4 HOH A 83 683 96 HOH HOH . G 4 HOH A 84 684 92 HOH HOH . G 4 HOH A 85 685 57 HOH HOH . G 4 HOH A 86 686 187 HOH HOH . G 4 HOH A 87 687 182 HOH HOH . G 4 HOH A 88 688 224 HOH HOH . G 4 HOH A 89 689 94 HOH HOH . G 4 HOH A 90 690 144 HOH HOH . G 4 HOH A 91 691 248 HOH HOH . G 4 HOH A 92 692 193 HOH HOH . G 4 HOH A 93 693 81 HOH HOH . G 4 HOH A 94 694 90 HOH HOH . G 4 HOH A 95 695 254 HOH HOH . G 4 HOH A 96 696 188 HOH HOH . G 4 HOH A 97 697 111 HOH HOH . G 4 HOH A 98 698 201 HOH HOH . G 4 HOH A 99 699 168 HOH HOH . G 4 HOH A 100 700 260 HOH HOH . G 4 HOH A 101 701 172 HOH HOH . G 4 HOH A 102 702 110 HOH HOH . G 4 HOH A 103 703 192 HOH HOH . G 4 HOH A 104 704 145 HOH HOH . G 4 HOH A 105 705 78 HOH HOH . G 4 HOH A 106 706 93 HOH HOH . G 4 HOH A 107 707 152 HOH HOH . G 4 HOH A 108 708 181 HOH HOH . G 4 HOH A 109 709 252 HOH HOH . G 4 HOH A 110 710 59 HOH HOH . G 4 HOH A 111 711 213 HOH HOH . G 4 HOH A 112 712 245 HOH HOH . G 4 HOH A 113 713 159 HOH HOH . G 4 HOH A 114 714 217 HOH HOH . G 4 HOH A 115 715 205 HOH HOH . G 4 HOH A 116 716 40 HOH HOH . G 4 HOH A 117 717 139 HOH HOH . G 4 HOH A 118 718 223 HOH HOH . G 4 HOH A 119 719 39 HOH HOH . G 4 HOH A 120 720 240 HOH HOH . G 4 HOH A 121 721 87 HOH HOH . G 4 HOH A 122 722 124 HOH HOH . G 4 HOH A 123 723 116 HOH HOH . G 4 HOH A 124 724 261 HOH HOH . G 4 HOH A 125 725 258 HOH HOH . G 4 HOH A 126 726 210 HOH HOH . G 4 HOH A 127 727 237 HOH HOH . G 4 HOH A 128 728 216 HOH HOH . G 4 HOH A 129 729 77 HOH HOH . G 4 HOH A 130 730 177 HOH HOH . G 4 HOH A 131 731 219 HOH HOH . G 4 HOH A 132 732 174 HOH HOH . G 4 HOH A 133 733 158 HOH HOH . G 4 HOH A 134 734 226 HOH HOH . G 4 HOH A 135 735 58 HOH HOH . G 4 HOH A 136 736 149 HOH HOH . G 4 HOH A 137 737 249 HOH HOH . G 4 HOH A 138 738 185 HOH HOH . G 4 HOH A 139 739 170 HOH HOH . G 4 HOH A 140 740 246 HOH HOH . H 4 HOH B 1 601 222 HOH HOH . H 4 HOH B 2 602 125 HOH HOH . H 4 HOH B 3 603 241 HOH HOH . H 4 HOH B 4 604 156 HOH HOH . H 4 HOH B 5 605 151 HOH HOH . H 4 HOH B 6 606 7 HOH HOH . H 4 HOH B 7 607 73 HOH HOH . H 4 HOH B 8 608 133 HOH HOH . H 4 HOH B 9 609 150 HOH HOH . H 4 HOH B 10 610 263 HOH HOH . H 4 HOH B 11 611 114 HOH HOH . H 4 HOH B 12 612 12 HOH HOH . H 4 HOH B 13 613 23 HOH HOH . H 4 HOH B 14 614 20 HOH HOH . H 4 HOH B 15 615 42 HOH HOH . H 4 HOH B 16 616 30 HOH HOH . H 4 HOH B 17 617 63 HOH HOH . H 4 HOH B 18 618 163 HOH HOH . H 4 HOH B 19 619 29 HOH HOH . H 4 HOH B 20 620 22 HOH HOH . H 4 HOH B 21 621 130 HOH HOH . H 4 HOH B 22 622 68 HOH HOH . H 4 HOH B 23 623 1 HOH HOH . H 4 HOH B 24 624 104 HOH HOH . H 4 HOH B 25 625 236 HOH HOH . H 4 HOH B 26 626 41 HOH HOH . H 4 HOH B 27 627 142 HOH HOH . H 4 HOH B 28 628 127 HOH HOH . H 4 HOH B 29 629 35 HOH HOH . H 4 HOH B 30 630 83 HOH HOH . H 4 HOH B 31 631 15 HOH HOH . H 4 HOH B 32 632 140 HOH HOH . H 4 HOH B 33 633 135 HOH HOH . H 4 HOH B 34 634 4 HOH HOH . H 4 HOH B 35 635 171 HOH HOH . H 4 HOH B 36 636 107 HOH HOH . H 4 HOH B 37 637 64 HOH HOH . H 4 HOH B 38 638 36 HOH HOH . H 4 HOH B 39 639 49 HOH HOH . H 4 HOH B 40 640 44 HOH HOH . H 4 HOH B 41 641 143 HOH HOH . H 4 HOH B 42 642 215 HOH HOH . H 4 HOH B 43 643 54 HOH HOH . H 4 HOH B 44 644 16 HOH HOH . H 4 HOH B 45 645 136 HOH HOH . H 4 HOH B 46 646 235 HOH HOH . H 4 HOH B 47 647 194 HOH HOH . H 4 HOH B 48 648 76 HOH HOH . H 4 HOH B 49 649 173 HOH HOH . H 4 HOH B 50 650 79 HOH HOH . H 4 HOH B 51 651 43 HOH HOH . H 4 HOH B 52 652 242 HOH HOH . H 4 HOH B 53 653 37 HOH HOH . H 4 HOH B 54 654 257 HOH HOH . H 4 HOH B 55 655 231 HOH HOH . H 4 HOH B 56 656 89 HOH HOH . H 4 HOH B 57 657 71 HOH HOH . H 4 HOH B 58 658 53 HOH HOH . H 4 HOH B 59 659 31 HOH HOH . H 4 HOH B 60 660 48 HOH HOH . H 4 HOH B 61 661 109 HOH HOH . H 4 HOH B 62 662 141 HOH HOH . H 4 HOH B 63 663 208 HOH HOH . H 4 HOH B 64 664 154 HOH HOH . H 4 HOH B 65 665 95 HOH HOH . H 4 HOH B 66 666 13 HOH HOH . H 4 HOH B 67 667 69 HOH HOH . H 4 HOH B 68 668 121 HOH HOH . H 4 HOH B 69 669 209 HOH HOH . H 4 HOH B 70 670 119 HOH HOH . H 4 HOH B 71 671 184 HOH HOH . H 4 HOH B 72 672 25 HOH HOH . H 4 HOH B 73 673 47 HOH HOH . H 4 HOH B 74 674 178 HOH HOH . H 4 HOH B 75 675 84 HOH HOH . H 4 HOH B 76 676 72 HOH HOH . H 4 HOH B 77 677 27 HOH HOH . H 4 HOH B 78 678 131 HOH HOH . H 4 HOH B 79 679 153 HOH HOH . H 4 HOH B 80 680 195 HOH HOH . H 4 HOH B 81 681 203 HOH HOH . H 4 HOH B 82 682 244 HOH HOH . H 4 HOH B 83 683 50 HOH HOH . H 4 HOH B 84 684 88 HOH HOH . H 4 HOH B 85 685 65 HOH HOH . H 4 HOH B 86 686 253 HOH HOH . H 4 HOH B 87 687 206 HOH HOH . H 4 HOH B 88 688 180 HOH HOH . H 4 HOH B 89 689 86 HOH HOH . H 4 HOH B 90 690 239 HOH HOH . H 4 HOH B 91 691 74 HOH HOH . H 4 HOH B 92 692 233 HOH HOH . H 4 HOH B 93 693 220 HOH HOH . H 4 HOH B 94 694 155 HOH HOH . H 4 HOH B 95 695 225 HOH HOH . H 4 HOH B 96 696 108 HOH HOH . H 4 HOH B 97 697 60 HOH HOH . H 4 HOH B 98 698 196 HOH HOH . H 4 HOH B 99 699 157 HOH HOH . H 4 HOH B 100 700 250 HOH HOH . H 4 HOH B 101 701 161 HOH HOH . H 4 HOH B 102 702 55 HOH HOH . H 4 HOH B 103 703 146 HOH HOH . H 4 HOH B 104 704 200 HOH HOH . H 4 HOH B 105 705 101 HOH HOH . H 4 HOH B 106 706 202 HOH HOH . H 4 HOH B 107 707 45 HOH HOH . H 4 HOH B 108 708 132 HOH HOH . H 4 HOH B 109 709 227 HOH HOH . H 4 HOH B 110 710 207 HOH HOH . H 4 HOH B 111 711 256 HOH HOH . H 4 HOH B 112 712 100 HOH HOH . H 4 HOH B 113 713 147 HOH HOH . H 4 HOH B 114 714 179 HOH HOH . H 4 HOH B 115 715 164 HOH HOH . H 4 HOH B 116 716 198 HOH HOH . H 4 HOH B 117 717 243 HOH HOH . H 4 HOH B 118 718 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KNA . . . F 3 37.423 36.821 42.379 1 37.8 ? C1 KNA 502 B 1 HETATM 2 O O1 KNA . . . F 3 36.914 37.962 42.559 1 43.09 ? O1 KNA 502 B 1 HETATM 3 C C2 KNA . . . F 3 38.7 36.395 43.11 1 30.65 ? C2 KNA 502 B 1 HETATM 4 O O2 KNA . . . F 3 36.858 36.029 41.58 1 36.56 ? O2 KNA 502 B 1 HETATM 5 C C3 KNA . . . F 3 39.348 35.241 42.335 1 33.54 ? C3 KNA 502 B 1 HETATM 6 C C4 KNA . . . F 3 39.813 34.096 43.245 1 30.2 ? C4 KNA 502 B 1 HETATM 7 C C5 KNA . . . F 3 39.045 32.789 42.943 1 36.06 ? C5 KNA 502 B 1 HETATM 8 C C6 KNA . . . F 3 37.766 33.057 42.122 1 39.51 ? C6 KNA 502 B 1 HETATM 9 C C7 KNA . . . F 3 36.856 31.836 41.869 1 32.57 ? C7 KNA 502 B 1 HETATM 10 C C8 KNA . . . F 3 37.633 30.547 41.592 1 32.44 ? C8 KNA 502 B 1 HETATM 11 C C9 KNA . . . F 3 36.708 29.39 41.211 1 34.45 ? C9 KNA 502 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #