data_8FHK # _model_server_result.job_id t0KN-Va2f_uPPIrfa6R_qw _model_server_result.datetime_utc '2024-10-16 23:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 8FHK # _exptl.entry_id 8FHK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FHK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 511 D GLN 511 1_555 O MG MG . D MG 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc2 C O2G ATP . D ATP 701 1_555 O MG MG . D MG 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 C O3G ATP . D ATP 701 1_555 O MG MG . D MG 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 C O2B ATP . D ATP 701 1_555 O MG MG . D MG 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 C O3B ATP . D ATP 701 1_555 O MG MG . D MG 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc6 P O2G ATP . C ATP 601 1_555 V MG MG . C MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc7 P O2B ATP . C ATP 601 1_555 V MG MG . C MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc8 P O3B ATP . C ATP 601 1_555 V MG MG . C MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8FHK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP D 1 701 2 ATP ATP . D 4 POV D 1 702 1 POV POV . E 4 POV D 1 703 2 POV POV . F 4 POV D 1 704 3 POV POV . G 4 POV D 1 705 4 POV POV . H 4 POV D 1 706 5 POV POV . I 4 POV D 1 707 6 POV POV . J 4 POV D 1 708 9 POV POV . K 4 POV D 1 709 11 POV POV . L 4 POV D 1 710 12 POV POV . M 4 POV D 1 711 14 POV POV . N 4 POV D 1 712 15 POV POV . O 5 MG D 1 713 2 MG MG . P 3 ATP C 1 601 1 ATP ATP . Q 4 POV C 1 602 7 POV POV . R 4 POV C 1 603 8 POV POV . S 4 POV C 1 604 10 POV POV . T 4 POV C 1 605 13 POV POV . U 4 POV C 1 606 16 POV POV . V 5 MG C 1 607 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 3 145.073 156.384 206.132 1 66.96 ? PG ATP 601 C 1 HETATM 2 O O1G ATP . . . P 3 144.403 156.089 207.409 1 66.96 ? O1G ATP 601 C 1 HETATM 3 O O2G ATP . . . P 3 146.33 157.122 206.404 1 66.96 ? O2G ATP 601 C 1 HETATM 4 O O3G ATP . . . P 3 145.357 155.193 205.3 1 66.96 ? O3G ATP 601 C 1 HETATM 5 P PB ATP . . . P 3 142.954 158.33 205.814 1 66.96 ? PB ATP 601 C 1 HETATM 6 O O1B ATP . . . P 3 141.722 157.875 206.46 1 66.96 ? O1B ATP 601 C 1 HETATM 7 O O2B ATP . . . P 3 143.97 158.93 206.652 1 66.96 ? O2B ATP 601 C 1 HETATM 8 O O3B ATP . . . P 3 143.89 157.138 205.32 1 66.96 ? O3B ATP 601 C 1 HETATM 9 P PA ATP . . . P 3 142.101 158.486 203.164 1 66.96 ? PA ATP 601 C 1 HETATM 10 O O1A ATP . . . P 3 143.18 158.772 202.185 1 66.96 ? O1A ATP 601 C 1 HETATM 11 O O2A ATP . . . P 3 141.806 157.106 203.635 1 66.96 ? O2A ATP 601 C 1 HETATM 12 O O3A ATP . . . P 3 142.542 159.178 204.523 1 66.96 ? O3A ATP 601 C 1 HETATM 13 O O5' ATP . . . P 3 140.73 159.111 202.633 1 66.96 ? O5' ATP 601 C 1 HETATM 14 C C5' ATP . . . P 3 139.466 158.421 202.89 1 66.96 ? C5' ATP 601 C 1 HETATM 15 C C4' ATP . . . P 3 139.075 157.478 201.775 1 66.96 ? C4' ATP 601 C 1 HETATM 16 O O4' ATP . . . P 3 139.08 158.181 200.519 1 66.96 ? O4' ATP 601 C 1 HETATM 17 C C3' ATP . . . P 3 139.976 156.284 201.462 1 66.96 ? C3' ATP 601 C 1 HETATM 18 O O3' ATP . . . P 3 139.759 155.226 202.38 1 66.96 ? O3' ATP 601 C 1 HETATM 19 C C2' ATP . . . P 3 139.506 155.909 200.057 1 66.96 ? C2' ATP 601 C 1 HETATM 20 O O2' ATP . . . P 3 138.412 155.023 200.081 1 66.96 ? O2' ATP 601 C 1 HETATM 21 C C1' ATP . . . P 3 139.025 157.238 199.481 1 66.96 ? C1' ATP 601 C 1 HETATM 22 N N9 ATP . . . P 3 139.838 157.762 198.426 1 66.96 ? N9 ATP 601 C 1 HETATM 23 C C8 ATP . . . P 3 141.166 158.063 198.486 1 66.96 ? C8 ATP 601 C 1 HETATM 24 N N7 ATP . . . P 3 141.616 158.56 197.359 1 66.96 ? N7 ATP 601 C 1 HETATM 25 C C5 ATP . . . P 3 140.506 158.59 196.524 1 66.96 ? C5 ATP 601 C 1 HETATM 26 C C6 ATP . . . P 3 140.326 159.013 195.199 1 66.96 ? C6 ATP 601 C 1 HETATM 27 N N6 ATP . . . P 3 141.304 159.498 194.445 1 66.96 ? N6 ATP 601 C 1 HETATM 28 N N1 ATP . . . P 3 139.083 158.912 194.679 1 66.96 ? N1 ATP 601 C 1 HETATM 29 C C2 ATP . . . P 3 138.106 158.416 195.446 1 66.96 ? C2 ATP 601 C 1 HETATM 30 N N3 ATP . . . P 3 138.159 157.99 196.702 1 66.96 ? N3 ATP 601 C 1 HETATM 31 C C4 ATP . . . P 3 139.402 158.11 197.183 1 66.96 ? C4 ATP 601 C 1 HETATM 32 H "H5'1" ATP . . . P 3 139.546 157.862 203.821 1 66.96 ? "H5'1" ATP 601 C 1 HETATM 33 H "H5'2" ATP . . . P 3 138.677 159.159 203.029 1 66.96 ? "H5'2" ATP 601 C 1 HETATM 34 H H4' ATP . . . P 3 138.124 157.108 202.155 1 66.96 ? H4' ATP 601 C 1 HETATM 35 H H3' ATP . . . P 3 141.042 156.498 201.53 1 66.96 ? H3' ATP 601 C 1 HETATM 36 H HO3' ATP . . . P 3 140.341 154.482 202.16 1 66.96 ? HO3' ATP 601 C 1 HETATM 37 H H2' ATP . . . P 3 140.298 155.418 199.493 1 66.96 ? H2' ATP 601 C 1 HETATM 38 H HO2' ATP . . . P 3 138.147 154.812 199.172 1 66.96 ? HO2' ATP 601 C 1 HETATM 39 H H1' ATP . . . P 3 138.032 157.058 199.072 1 66.96 ? H1' ATP 601 C 1 HETATM 40 H H8 ATP . . . P 3 141.779 157.909 199.364 1 66.96 ? H8 ATP 601 C 1 HETATM 41 H HN61 ATP . . . P 3 141.113 159.789 193.49 1 66.96 ? HN61 ATP 601 C 1 HETATM 42 H HN62 ATP . . . P 3 142.244 159.579 194.822 1 66.96 ? HN62 ATP 601 C 1 HETATM 43 H H2 ATP . . . P 3 137.134 158.353 194.976 1 66.96 ? H2 ATP 601 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #