data_8FHW
#
_model_server_result.job_id            UpCi4QidjSeC-QZYI_hxmQ 
_model_server_result.datetime_utc      '2024-10-20 09:21:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fhw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":701}' 
#
_entry.id    8FHW 
#
_exptl.entry_id    8FHW 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              404.161 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FHW 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FHW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C9 H14 N2 O12 P2' 
_chem_comp.formula_weight    404.161 
_chem_comp.id                UDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UDP sing 385 n n 
N1 C6 UDP sing 386 n n 
N1 C1' UDP sing 387 n n 
C2 N3 UDP sing 388 n n 
C2 O2 UDP doub 389 n n 
N3 C4 UDP sing 390 n n 
N3 HN3 UDP sing 391 n n 
C4 C5 UDP sing 392 n n 
C4 O4 UDP doub 393 n n 
C5 C6 UDP doub 394 n n 
C5 H5 UDP sing 395 n n 
C6 H6 UDP sing 396 n n 
C1' C2' UDP sing 397 n n 
C1' O4' UDP sing 398 n n 
C1' H1' UDP sing 399 n n 
C2' O2' UDP sing 400 n n 
C2' C3' UDP sing 401 n n 
C2' H2' UDP sing 402 n n 
O2' HO2' UDP sing 403 n n 
C3' C4' UDP sing 404 n n 
C3' O3' UDP sing 405 n n 
C3' H3' UDP sing 406 n n 
C4' O4' UDP sing 407 n n 
C4' C5' UDP sing 408 n n 
C4' H4' UDP sing 409 n n 
O3' HO3' UDP sing 410 n n 
C5' O5' UDP sing 411 n n 
C5' "H5'1" UDP sing 412 n n 
C5' "H5'2" UDP sing 413 n n 
O5' PA UDP sing 414 n n 
PA O1A UDP doub 415 n n 
PA O2A UDP sing 416 n n 
PA O3A UDP sing 417 n n 
O2A HOA2 UDP sing 418 n n 
O3A PB UDP sing 419 n n 
PB O1B UDP doub 420 n n 
PB O2B UDP sing 421 n n 
PB O3B UDP sing 422 n n 
O2B HOB2 UDP sing 423 n n 
O3B HOB3 UDP sing 424 n n 
#
_atom_sites.entry_id                     8FHW 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UDP A 1 701 501 UDP UDP . 
F 3 G6P A 1 702 502 G6P G6P . 
G 2 UDP B 1 701 501 UDP UDP . 
H 3 G6P B 1 702 502 G6P G6P . 
I 2 UDP C 1 701 501 UDP UDP . 
J 3 G6P C 1 702 502 G6P G6P . 
K 2 UDP D 1 701 501 UDP UDP . 
L 3 G6P D 1 702 502 G6P G6P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UDP . . . K 2 121.152 123.411 160.749 1 46.36 ? N1 UDP 701 D 1 
HETATM 2 C C2 UDP . . . K 2 121.947 122.457 160.15 1 46.36 ? C2 UDP 701 D 1 
HETATM 3 N N3 UDP . . . K 2 123.277 122.517 160.475 1 46.36 ? N3 UDP 701 D 1 
HETATM 4 C C4 UDP . . . K 2 123.875 123.419 161.33 1 46.36 ? C4 UDP 701 D 1 
HETATM 5 C C5 UDP . . . K 2 122.988 124.372 161.915 1 46.36 ? C5 UDP 701 D 1 
HETATM 6 C C6 UDP . . . K 2 121.68 124.34 161.615 1 46.36 ? C6 UDP 701 D 1 
HETATM 7 O O2 UDP . . . K 2 121.506 121.617 159.379 1 46.36 ? O2 UDP 701 D 1 
HETATM 8 O O4 UDP . . . K 2 125.097 123.353 161.531 1 46.36 ? O4 UDP 701 D 1 
HETATM 9 C C1' UDP . . . K 2 119.713 123.38 160.435 1 46.36 ? C1' UDP 701 D 1 
HETATM 10 C C2' UDP . . . K 2 118.837 124.217 161.353 1 46.36 ? C2' UDP 701 D 1 
HETATM 11 O O2' UDP . . . K 2 118.57 123.539 162.574 1 46.36 ? O2' UDP 701 D 1 
HETATM 12 C C3' UDP . . . K 2 117.587 124.36 160.482 1 46.36 ? C3' UDP 701 D 1 
HETATM 13 C C4' UDP . . . K 2 118.159 124.417 159.062 1 46.36 ? C4' UDP 701 D 1 
HETATM 14 O O4' UDP . . . K 2 119.518 123.927 159.153 1 46.36 ? O4' UDP 701 D 1 
HETATM 15 O O3' UDP . . . K 2 116.715 123.246 160.625 1 46.36 ? O3' UDP 701 D 1 
HETATM 16 C C5' UDP . . . K 2 118.157 125.787 158.433 1 46.36 ? C5' UDP 701 D 1 
HETATM 17 O O5' UDP . . . K 2 116.798 126.117 158.075 1 46.36 ? O5' UDP 701 D 1 
HETATM 18 P PA UDP . . . K 2 116.439 126.733 156.664 1 46.36 ? PA UDP 701 D 1 
HETATM 19 O O1A UDP . . . K 2 115.166 126.11 156.235 1 46.36 -1 O1A UDP 701 D 1 
HETATM 20 O O2A UDP . . . K 2 116.483 128.256 156.702 1 46.36 ? O2A UDP 701 D 1 
HETATM 21 O O3A UDP . . . K 2 117.617 126.279 155.715 1 46.36 ? O3A UDP 701 D 1 
HETATM 22 P PB UDP . . . K 2 117.452 125.97 154.171 1 46.36 ? PB UDP 701 D 1 
HETATM 23 O O1B UDP . . . K 2 117.254 127.202 153.373 1 46.36 ? O1B UDP 701 D 1 
HETATM 24 O O2B UDP . . . K 2 118.722 125.215 153.838 1 46.36 -1 O2B UDP 701 D 1 
HETATM 25 O O3B UDP . . . K 2 116.262 125.013 154.135 1 46.36 ? O3B UDP 701 D 1 
HETATM 26 H HN3 UDP . . . K 2 123.79 121.932 160.109 1 46.36 ? HN3 UDP 701 D 1 
HETATM 27 H H5 UDP . . . K 2 123.317 125.014 162.501 1 46.36 ? H5 UDP 701 D 1 
HETATM 28 H H6 UDP . . . K 2 121.12 124.97 162.008 1 46.36 ? H6 UDP 701 D 1 
HETATM 29 H H1' UDP . . . K 2 119.399 122.463 160.443 1 46.36 ? H1' UDP 701 D 1 
HETATM 30 H H2' UDP . . . K 2 119.236 125.086 161.514 1 46.36 ? H2' UDP 701 D 1 
HETATM 31 H HO2' UDP . . . K 2 117.735 123.386 162.638 1 46.36 ? HO2' UDP 701 D 1 
HETATM 32 H H3' UDP . . . K 2 117.125 125.186 160.693 1 46.36 ? H3' UDP 701 D 1 
HETATM 33 H H4' UDP . . . K 2 117.65 123.812 158.501 1 46.36 ? H4' UDP 701 D 1 
HETATM 34 H HO3' UDP . . . K 2 116.132 123.419 161.22 1 46.36 ? HO3' UDP 701 D 1 
HETATM 35 H "H5'1" UDP . . . K 2 118.723 125.783 157.647 1 46.36 ? "H5'1" UDP 701 D 1 
HETATM 36 H "H5'2" UDP . . . K 2 118.492 126.438 159.069 1 46.36 ? "H5'2" UDP 701 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#