data_8FIM # _model_server_result.job_id MUGfr_6qZAvMKeedUZhC2Q _model_server_result.datetime_utc '2024-11-22 23:32:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8FIM # _exptl.entry_id 8FIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.57 _cell.angle_gamma 90 _cell.entry_id 8FIM _cell.length_a 53.917 _cell.length_b 56.904 _cell.length_c 91.549 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,L 1 1 B,C,I,J,K,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 70 A HIS 70 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc2 A SG CYS 101 A CYS 101 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 A SG CYS 106 A CYS 106 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc4 B ND1 HIS 70 B HIS 70 1_555 J ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc5 B SG CYS 101 B CYS 101 1_555 J ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc6 B SG CYS 106 B CYS 106 1_555 J ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? hydrog TYPE_16_PAIR hydrog1 D N3 DT 1 C DT -7 1_555 D O2 DT 13 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog2 D O4 DT 1 C DT -7 1_555 D N3 DT 13 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D N1 DG 2 C DG -6 1_555 D N3 DC 12 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N2 DG 2 C DG -6 1_555 D O2 DC 12 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D O6 DG 2 C DG -6 1_555 D N4 DC 12 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N3 DC 3 C DC -5 1_555 D N1 DG 11 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D N4 DC 3 C DC -5 1_555 D O6 DG 11 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D O2 DC 3 C DC -5 1_555 D N2 DG 11 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N1 DG 4 C DG -4 1_555 D N3 DC 10 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N2 DG 4 C DG -4 1_555 D O2 DC 10 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D O6 DG 4 C DG -4 1_555 D N4 DC 10 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N3 DC 5 C DC -3 1_555 D N1 DG 9 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N4 DC 5 C DC -3 1_555 D O6 DG 9 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D O2 DC 5 C DC -3 1_555 D N2 DG 9 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog15 C N3 DT 1 H DT -7 1_555 C O2 DT 13 H DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog16 C O4 DT 1 H DT -7 1_555 C N3 DT 13 H DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DG 2 H DG -6 1_555 C N3 DC 12 H DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N2 DG 2 H DG -6 1_555 C O2 DC 12 H DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O6 DG 2 H DG -6 1_555 C N4 DC 12 H DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N3 DC 3 H DC -5 1_555 C N1 DG 11 H DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N4 DC 3 H DC -5 1_555 C O6 DG 11 H DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C O2 DC 3 H DC -5 1_555 C N2 DG 11 H DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N1 DG 4 H DG -4 1_555 C N3 DC 10 H DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N2 DG 4 H DG -4 1_555 C O2 DC 10 H DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C O6 DG 4 H DG -4 1_555 C N4 DC 10 H DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N3 DC 5 H DC -3 1_555 C N1 DG 9 H DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N4 DC 5 H DC -3 1_555 C O6 DG 9 H DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O2 DC 5 H DC -3 1_555 C N2 DG 9 H DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 263 n n C1 C6 IHP sing 264 n n C1 O11 IHP sing 265 n n C1 H1 IHP sing 266 n n C2 C3 IHP sing 267 n n C2 O12 IHP sing 268 n n C2 H2 IHP sing 269 n n C3 C4 IHP sing 270 n n C3 O13 IHP sing 271 n n C3 H3 IHP sing 272 n n C4 C5 IHP sing 273 n n C4 O14 IHP sing 274 n n C4 H4 IHP sing 275 n n C5 C6 IHP sing 276 n n C5 O15 IHP sing 277 n n C5 H5 IHP sing 278 n n C6 O16 IHP sing 279 n n C6 H6 IHP sing 280 n n O11 P1 IHP sing 281 n n P1 O21 IHP doub 282 n n P1 O31 IHP sing 283 n n P1 O41 IHP sing 284 n n O31 H31 IHP sing 285 n n O41 H41 IHP sing 286 n n O12 P2 IHP sing 287 n n P2 O22 IHP doub 288 n n P2 O32 IHP sing 289 n n P2 O42 IHP sing 290 n n O32 H32 IHP sing 291 n n O42 H42 IHP sing 292 n n O13 P3 IHP sing 293 n n P3 O23 IHP doub 294 n n P3 O33 IHP sing 295 n n P3 O43 IHP sing 296 n n O33 H33 IHP sing 297 n n O43 H43 IHP sing 298 n n O14 P4 IHP sing 299 n n P4 O24 IHP doub 300 n n P4 O34 IHP sing 301 n n P4 O44 IHP sing 302 n n O34 H34 IHP sing 303 n n O44 H44 IHP sing 304 n n O15 P5 IHP sing 305 n n P5 O25 IHP doub 306 n n P5 O35 IHP sing 307 n n P5 O45 IHP sing 308 n n O35 H35 IHP sing 309 n n O45 H45 IHP sing 310 n n O16 P6 IHP sing 311 n n P6 O26 IHP doub 312 n n P6 O36 IHP sing 313 n n P6 O46 IHP sing 314 n n O36 H36 IHP sing 315 n n O46 H46 IHP sing 316 n n # _atom_sites.entry_id 8FIM _atom_sites.fract_transf_matrix[1][1] 0.018547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 IHP A 1 201 201 IHP I6P . F 4 ZN A 1 202 2 ZN ZN . G 5 CL A 1 203 1 CL CL . H 6 PO4 A 1 204 1 PO4 PO4 . I 3 IHP B 1 201 201 IHP I6P . J 4 ZN B 1 202 1 ZN ZN . K 5 CL B 1 203 2 CL CL . L 7 HOH A 1 301 15 HOH HOH . L 7 HOH A 2 302 8 HOH HOH . L 7 HOH A 3 303 6 HOH HOH . L 7 HOH A 4 304 10 HOH HOH . L 7 HOH A 5 305 2 HOH HOH . L 7 HOH A 6 306 7 HOH HOH . L 7 HOH A 7 307 11 HOH HOH . L 7 HOH A 8 308 9 HOH HOH . L 7 HOH A 9 309 16 HOH HOH . L 7 HOH A 10 310 12 HOH HOH . L 7 HOH A 11 311 13 HOH HOH . M 7 HOH B 1 301 5 HOH HOH . M 7 HOH B 2 302 14 HOH HOH . M 7 HOH B 3 303 1 HOH HOH . M 7 HOH B 4 304 4 HOH HOH . N 7 HOH H 1 101 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . E 3 -14.239 2.143 56.229 1 150.24 ? C1 IHP 201 A 1 HETATM 2 C C2 IHP . . . E 3 -13.136 1.541 55.371 1 141.68 ? C2 IHP 201 A 1 HETATM 3 C C3 IHP . . . E 3 -13.361 1.833 53.893 1 131.44 ? C3 IHP 201 A 1 HETATM 4 C C4 IHP . . . E 3 -13.42 3.34 53.726 1 112.96 ? C4 IHP 201 A 1 HETATM 5 C C5 IHP . . . E 3 -14.598 3.794 54.567 1 123.95 ? C5 IHP 201 A 1 HETATM 6 C C6 IHP . . . E 3 -14.139 3.646 56.009 1 142.78 ? C6 IHP 201 A 1 HETATM 7 O O11 IHP . . . E 3 -14.123 1.725 57.631 1 155.69 ? O11 IHP 201 A 1 HETATM 8 P P1 IHP . . . E 3 -15.177 0.625 58.202 1 142.57 ? P1 IHP 201 A 1 HETATM 9 O O21 IHP . . . E 3 -14.993 -0.651 57.398 1 130.21 ? O21 IHP 201 A 1 HETATM 10 O O31 IHP . . . E 3 -16.559 1.222 57.994 1 135.86 ? O31 IHP 201 A 1 HETATM 11 O O41 IHP . . . E 3 -14.873 0.405 59.672 1 140.26 ? O41 IHP 201 A 1 HETATM 12 O O12 IHP . . . E 3 -12.958 0.104 55.575 1 137.02 ? O12 IHP 201 A 1 HETATM 13 P P2 IHP . . . E 3 -11.425 -0.391 55.457 1 144.33 ? P2 IHP 201 A 1 HETATM 14 O O22 IHP . . . E 3 -11.438 -1.607 54.549 1 133.22 ? O22 IHP 201 A 1 HETATM 15 O O32 IHP . . . E 3 -10.616 0.758 54.869 1 125.02 ? O32 IHP 201 A 1 HETATM 16 O O42 IHP . . . E 3 -10.992 -0.727 56.873 1 135.84 ? O42 IHP 201 A 1 HETATM 17 O O13 IHP . . . E 3 -14.625 1.303 53.353 1 140.48 ? O13 IHP 201 A 1 HETATM 18 P P3 IHP . . . E 3 -15.937 0.496 53.877 1 146.06 ? P3 IHP 201 A 1 HETATM 19 O O23 IHP . . . E 3 -16.81 1.289 54.838 1 125.97 ? O23 IHP 201 A 1 HETATM 20 O O33 IHP . . . E 3 -16.676 0.223 52.578 1 131.93 ? O33 IHP 201 A 1 HETATM 21 O O43 IHP . . . E 3 -15.411 -0.781 54.51 1 152.43 ? O43 IHP 201 A 1 HETATM 22 O O14 IHP . . . E 3 -13.582 3.653 52.311 1 80.53 ? O14 IHP 201 A 1 HETATM 23 P P4 IHP . . . E 3 -12.33 3.619 51.3 1 69.97 ? P4 IHP 201 A 1 HETATM 24 O O24 IHP . . . E 3 -12.954 2.908 50.113 1 68.8 ? O24 IHP 201 A 1 HETATM 25 O O34 IHP . . . E 3 -12.063 5.087 51.042 1 70.04 ? O34 IHP 201 A 1 HETATM 26 O O44 IHP . . . E 3 -11.072 2.934 51.767 1 70 ? O44 IHP 201 A 1 HETATM 27 O O15 IHP . . . E 3 -15.149 5.084 54.152 1 116.49 ? O15 IHP 201 A 1 HETATM 28 P P5 IHP . . . E 3 -16.531 4.909 53.299 1 98.37 ? P5 IHP 201 A 1 HETATM 29 O O25 IHP . . . E 3 -17.422 6.09 53.654 1 115.01 ? O25 IHP 201 A 1 HETATM 30 O O35 IHP . . . E 3 -16.173 4.903 51.825 1 92.75 ? O35 IHP 201 A 1 HETATM 31 O O45 IHP . . . E 3 -17.19 3.606 53.707 1 101.93 ? O45 IHP 201 A 1 HETATM 32 O O16 IHP . . . E 3 -14.902 4.434 56.982 1 152.36 ? O16 IHP 201 A 1 HETATM 33 P P6 IHP . . . E 3 -14.066 5.319 58.061 1 153 ? P6 IHP 201 A 1 HETATM 34 O O26 IHP . . . E 3 -14.99 6.432 58.523 1 149.29 ? O26 IHP 201 A 1 HETATM 35 O O36 IHP . . . E 3 -13.666 4.41 59.211 1 140.82 ? O36 IHP 201 A 1 HETATM 36 O O46 IHP . . . E 3 -12.851 5.857 57.322 1 145.33 ? O46 IHP 201 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #