data_8FIM # _model_server_result.job_id 2YvpRCk_BWyqn21TdUqTkQ _model_server_result.datetime_utc '2024-11-26 12:55:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 8FIM # _exptl.entry_id 8FIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.57 _cell.angle_gamma 90 _cell.entry_id 8FIM _cell.length_a 53.917 _cell.length_b 56.904 _cell.length_c 91.549 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,L 1 1 B,C,I,J,K,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 70 A HIS 70 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc2 A SG CYS 101 A CYS 101 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 A SG CYS 106 A CYS 106 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc4 B ND1 HIS 70 B HIS 70 1_555 J ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc5 B SG CYS 101 B CYS 101 1_555 J ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc6 B SG CYS 106 B CYS 106 1_555 J ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? hydrog TYPE_16_PAIR hydrog1 D N3 DT 1 C DT -7 1_555 D O2 DT 13 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog2 D O4 DT 1 C DT -7 1_555 D N3 DT 13 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D N1 DG 2 C DG -6 1_555 D N3 DC 12 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N2 DG 2 C DG -6 1_555 D O2 DC 12 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D O6 DG 2 C DG -6 1_555 D N4 DC 12 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N3 DC 3 C DC -5 1_555 D N1 DG 11 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D N4 DC 3 C DC -5 1_555 D O6 DG 11 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D O2 DC 3 C DC -5 1_555 D N2 DG 11 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N1 DG 4 C DG -4 1_555 D N3 DC 10 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N2 DG 4 C DG -4 1_555 D O2 DC 10 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D O6 DG 4 C DG -4 1_555 D N4 DC 10 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N3 DC 5 C DC -3 1_555 D N1 DG 9 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N4 DC 5 C DC -3 1_555 D O6 DG 9 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D O2 DC 5 C DC -3 1_555 D N2 DG 9 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog15 C N3 DT 1 H DT -7 1_555 C O2 DT 13 H DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog16 C O4 DT 1 H DT -7 1_555 C N3 DT 13 H DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DG 2 H DG -6 1_555 C N3 DC 12 H DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N2 DG 2 H DG -6 1_555 C O2 DC 12 H DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O6 DG 2 H DG -6 1_555 C N4 DC 12 H DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N3 DC 3 H DC -5 1_555 C N1 DG 11 H DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N4 DC 3 H DC -5 1_555 C O6 DG 11 H DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C O2 DC 3 H DC -5 1_555 C N2 DG 11 H DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N1 DG 4 H DG -4 1_555 C N3 DC 10 H DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N2 DG 4 H DG -4 1_555 C O2 DC 10 H DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C O6 DG 4 H DG -4 1_555 C N4 DC 10 H DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N3 DC 5 H DC -3 1_555 C N1 DG 9 H DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N4 DC 5 H DC -3 1_555 C O6 DG 9 H DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O2 DC 5 H DC -3 1_555 C N2 DG 9 H DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 263 n n C1 C6 IHP sing 264 n n C1 O11 IHP sing 265 n n C1 H1 IHP sing 266 n n C2 C3 IHP sing 267 n n C2 O12 IHP sing 268 n n C2 H2 IHP sing 269 n n C3 C4 IHP sing 270 n n C3 O13 IHP sing 271 n n C3 H3 IHP sing 272 n n C4 C5 IHP sing 273 n n C4 O14 IHP sing 274 n n C4 H4 IHP sing 275 n n C5 C6 IHP sing 276 n n C5 O15 IHP sing 277 n n C5 H5 IHP sing 278 n n C6 O16 IHP sing 279 n n C6 H6 IHP sing 280 n n O11 P1 IHP sing 281 n n P1 O21 IHP doub 282 n n P1 O31 IHP sing 283 n n P1 O41 IHP sing 284 n n O31 H31 IHP sing 285 n n O41 H41 IHP sing 286 n n O12 P2 IHP sing 287 n n P2 O22 IHP doub 288 n n P2 O32 IHP sing 289 n n P2 O42 IHP sing 290 n n O32 H32 IHP sing 291 n n O42 H42 IHP sing 292 n n O13 P3 IHP sing 293 n n P3 O23 IHP doub 294 n n P3 O33 IHP sing 295 n n P3 O43 IHP sing 296 n n O33 H33 IHP sing 297 n n O43 H43 IHP sing 298 n n O14 P4 IHP sing 299 n n P4 O24 IHP doub 300 n n P4 O34 IHP sing 301 n n P4 O44 IHP sing 302 n n O34 H34 IHP sing 303 n n O44 H44 IHP sing 304 n n O15 P5 IHP sing 305 n n P5 O25 IHP doub 306 n n P5 O35 IHP sing 307 n n P5 O45 IHP sing 308 n n O35 H35 IHP sing 309 n n O45 H45 IHP sing 310 n n O16 P6 IHP sing 311 n n P6 O26 IHP doub 312 n n P6 O36 IHP sing 313 n n P6 O46 IHP sing 314 n n O36 H36 IHP sing 315 n n O46 H46 IHP sing 316 n n # _atom_sites.entry_id 8FIM _atom_sites.fract_transf_matrix[1][1] 0.018547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 IHP A 1 201 201 IHP I6P . F 4 ZN A 1 202 2 ZN ZN . G 5 CL A 1 203 1 CL CL . H 6 PO4 A 1 204 1 PO4 PO4 . I 3 IHP B 1 201 201 IHP I6P . J 4 ZN B 1 202 1 ZN ZN . K 5 CL B 1 203 2 CL CL . L 7 HOH A 1 301 15 HOH HOH . L 7 HOH A 2 302 8 HOH HOH . L 7 HOH A 3 303 6 HOH HOH . L 7 HOH A 4 304 10 HOH HOH . L 7 HOH A 5 305 2 HOH HOH . L 7 HOH A 6 306 7 HOH HOH . L 7 HOH A 7 307 11 HOH HOH . L 7 HOH A 8 308 9 HOH HOH . L 7 HOH A 9 309 16 HOH HOH . L 7 HOH A 10 310 12 HOH HOH . L 7 HOH A 11 311 13 HOH HOH . M 7 HOH B 1 301 5 HOH HOH . M 7 HOH B 2 302 14 HOH HOH . M 7 HOH B 3 303 1 HOH HOH . M 7 HOH B 4 304 4 HOH HOH . N 7 HOH H 1 101 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . I 3 36.109 -13.7 -5.189 1 108.75 ? C1 IHP 201 B 1 HETATM 2 C C2 IHP . . . I 3 35.68 -13.55 -3.744 1 103.81 ? C2 IHP 201 B 1 HETATM 3 C C3 IHP . . . I 3 36.919 -13.28 -2.917 1 117.88 ? C3 IHP 201 B 1 HETATM 4 C C4 IHP . . . I 3 37.36 -11.881 -3.296 1 125.78 ? C4 IHP 201 B 1 HETATM 5 C C5 IHP . . . I 3 37.738 -11.84 -4.769 1 120.53 ? C5 IHP 201 B 1 HETATM 6 C C6 IHP . . . I 3 36.627 -12.356 -5.674 1 117.57 ? C6 IHP 201 B 1 HETATM 7 O O11 IHP . . . I 3 34.966 -14.132 -5.992 1 101.49 ? O11 IHP 201 B 1 HETATM 8 P P1 IHP . . . I 3 35.028 -15.579 -6.703 1 85.42 ? P1 IHP 201 B 1 HETATM 9 O O21 IHP . . . I 3 35.719 -16.521 -5.731 1 89.73 ? O21 IHP 201 B 1 HETATM 10 O O31 IHP . . . I 3 35.835 -15.397 -7.975 1 87.1 ? O31 IHP 201 B 1 HETATM 11 O O41 IHP . . . I 3 33.576 -15.951 -6.964 1 77.21 ? O41 IHP 201 B 1 HETATM 12 O O12 IHP . . . I 3 35.009 -14.743 -3.254 1 76.15 ? O12 IHP 201 B 1 HETATM 13 P P2 IHP . . . I 3 33.776 -14.433 -2.29 1 71.44 ? P2 IHP 201 B 1 HETATM 14 O O22 IHP . . . I 3 33.285 -15.807 -1.907 1 69.18 ? O22 IHP 201 B 1 HETATM 15 O O32 IHP . . . I 3 34.377 -13.687 -1.11 1 79.38 ? O32 IHP 201 B 1 HETATM 16 O O42 IHP . . . I 3 32.699 -13.649 -3.013 1 64.06 ? O42 IHP 201 B 1 HETATM 17 O O13 IHP . . . I 3 37.962 -14.236 -3.308 1 130.38 ? O13 IHP 201 B 1 HETATM 18 P P3 IHP . . . I 3 38.859 -15.164 -2.337 1 134.37 ? P3 IHP 201 B 1 HETATM 19 O O23 IHP . . . I 3 38.224 -15.097 -0.958 1 123.47 ? O23 IHP 201 B 1 HETATM 20 O O33 IHP . . . I 3 38.821 -16.561 -2.935 1 127.05 ? O33 IHP 201 B 1 HETATM 21 O O43 IHP . . . I 3 40.258 -14.574 -2.355 1 131.86 ? O43 IHP 201 B 1 HETATM 22 O O14 IHP . . . I 3 38.497 -11.492 -2.46 1 135.39 ? O14 IHP 201 B 1 HETATM 23 P P4 IHP . . . I 3 38.203 -10.76 -1.052 1 140.72 ? P4 IHP 201 B 1 HETATM 24 O O24 IHP . . . I 3 37.703 -9.363 -1.373 1 127.57 ? O24 IHP 201 B 1 HETATM 25 O O34 IHP . . . I 3 37.154 -11.584 -0.327 1 139.77 ? O34 IHP 201 B 1 HETATM 26 O O44 IHP . . . I 3 39.531 -10.747 -0.321 1 140.39 ? O44 IHP 201 B 1 HETATM 27 O O15 IHP . . . I 3 38.007 -10.448 -5.13 1 119.71 ? O15 IHP 201 B 1 HETATM 28 P P5 IHP . . . I 3 39.344 -10.038 -5.93 1 119.95 ? P5 IHP 201 B 1 HETATM 29 O O25 IHP . . . I 3 39.974 -11.293 -6.505 1 122.37 ? O25 IHP 201 B 1 HETATM 30 O O35 IHP . . . I 3 38.883 -9.079 -7.012 1 121.76 ? O35 IHP 201 B 1 HETATM 31 O O45 IHP . . . I 3 40.233 -9.374 -4.895 1 123.11 ? O45 IHP 201 B 1 HETATM 32 O O16 IHP . . . I 3 37.163 -12.52 -7.028 1 120.66 ? O16 IHP 201 B 1 HETATM 33 P P6 IHP . . . I 3 36.408 -11.985 -8.355 1 123.5 ? P6 IHP 201 B 1 HETATM 34 O O26 IHP . . . I 3 36.889 -12.907 -9.46 1 114.64 ? O26 IHP 201 B 1 HETATM 35 O O36 IHP . . . I 3 34.91 -12.095 -8.119 1 103.26 ? O36 IHP 201 B 1 HETATM 36 O O46 IHP . . . I 3 36.846 -10.546 -8.581 1 121.02 ? O46 IHP 201 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 36 #