data_8FIV # _model_server_result.job_id 9pIRZbAO69bHDu-s6GfRlA _model_server_result.datetime_utc '2025-04-20 00:59:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8FIV # _exptl.entry_id 8FIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.569 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3Z)-N-([1,1'-biphenyl]-4-yl)-3-imino-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]propanamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.29 _cell.angle_gamma 90 _cell.entry_id 8FIV _cell.length_a 113.293 _cell.length_b 54.038 _cell.length_c 45.448 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C35 _struct_conn.ptnr2_label_comp_id Y0I _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id Y0I _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.649 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H28 N4 O2' _chem_comp.formula_weight 476.569 _chem_comp.id Y0I _chem_comp.mon_nstd_flag . _chem_comp.name "(3Z)-N-([1,1'-biphenyl]-4-yl)-3-imino-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 N18 Y0I doub 374 n y C19 C20 Y0I sing 375 n y N18 C17 Y0I sing 376 n y C20 C21 Y0I doub 377 n y C17 C16 Y0I doub 378 n y N37 C35 Y0I doub 379 n n C21 C16 Y0I sing 380 n y C16 C04 Y0I sing 381 n n C35 C34 Y0I sing 382 n n O01 C02 Y0I doub 383 n n O15 C05 Y0I doub 384 n n C02 C34 Y0I sing 385 n n C02 N03 Y0I sing 386 n n C04 N03 Y0I sing 387 n n C04 C05 Y0I sing 388 n n N03 C22 Y0I sing 389 n n C05 N06 Y0I sing 390 n n C23 C22 Y0I doub 391 n y C23 C24 Y0I sing 392 n y C22 C33 Y0I sing 393 n y C24 C25 Y0I doub 394 n y N06 C07 Y0I sing 395 n n C07 C08 Y0I sing 396 n n C07 C09 Y0I sing 397 n n C10 C09 Y0I doub 398 n y C10 C11 Y0I sing 399 n y C09 C14 Y0I sing 400 n y C33 C32 Y0I doub 401 n y C11 C12 Y0I doub 402 n y C25 C32 Y0I sing 403 n y C25 C26 Y0I sing 404 n n C31 C26 Y0I doub 405 n y C31 C30 Y0I sing 406 n y C26 C27 Y0I sing 407 n y C14 C13 Y0I doub 408 n y C30 C29 Y0I doub 409 n y C12 C13 Y0I sing 410 n y C27 C28 Y0I doub 411 n y C29 C28 Y0I sing 412 n y C10 H1 Y0I sing 413 n n C13 H2 Y0I sing 414 n n C17 H3 Y0I sing 415 n n C20 H4 Y0I sing 416 n n C21 H5 Y0I sing 417 n n C24 H6 Y0I sing 418 n n C28 H7 Y0I sing 419 n n C04 H8 Y0I sing 420 n n N06 H9 Y0I sing 421 n n C07 H10 Y0I sing 422 n n C08 H11 Y0I sing 423 n n C08 H12 Y0I sing 424 n n C08 H13 Y0I sing 425 n n C11 H14 Y0I sing 426 n n C12 H15 Y0I sing 427 n n C14 H16 Y0I sing 428 n n C19 H17 Y0I sing 429 n n C23 H18 Y0I sing 430 n n C27 H19 Y0I sing 431 n n C29 H20 Y0I sing 432 n n C30 H21 Y0I sing 433 n n C31 H22 Y0I sing 434 n n C32 H23 Y0I sing 435 n n C33 H24 Y0I sing 436 n n C34 H25 Y0I sing 437 n n C34 H26 Y0I sing 438 n n C35 H27 Y0I sing 439 n n N37 H29 Y0I sing 440 n n # _atom_sites.entry_id 8FIV _atom_sites.fract_transf_matrix[1][1] 0.008827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001762 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id Y0I _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id Y0I _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Y0I . . . B 2 11.137 2.103 23.052 1 78.02 ? C10 Y0I 401 A 1 HETATM 2 C C13 Y0I . . . B 2 10.798 1.958 25.783 1 75.54 ? C13 Y0I 401 A 1 HETATM 3 C C17 Y0I . . . B 2 6.718 0.119 18.91 1 62.76 ? C17 Y0I 401 A 1 HETATM 4 C C20 Y0I . . . B 2 4.599 1.875 18.668 1 65.06 ? C20 Y0I 401 A 1 HETATM 5 C C21 Y0I . . . B 2 5.08 1.596 19.962 1 62.92 ? C21 Y0I 401 A 1 HETATM 6 C C22 Y0I . . . B 2 8.441 -1.326 22.403 1 68.16 ? C22 Y0I 401 A 1 HETATM 7 C C24 Y0I . . . B 2 10.835 -1.569 22.568 1 69.17 ? C24 Y0I 401 A 1 HETATM 8 C C26 Y0I . . . B 2 11.94 -2.201 24.848 1 80.75 ? C26 Y0I 401 A 1 HETATM 9 C C28 Y0I . . . B 2 12.878 -2.911 26.974 1 83.12 ? C28 Y0I 401 A 1 HETATM 10 O O01 Y0I . . . B 2 5.38 -2.174 20.592 1 69.24 ? O01 Y0I 401 A 1 HETATM 11 C C02 Y0I . . . B 2 6.401 -2.263 21.202 1 65.17 ? C02 Y0I 401 A 1 HETATM 12 N N03 Y0I . . . B 2 7.182 -1.066 21.659 1 68.3 ? N03 Y0I 401 A 1 HETATM 13 C C04 Y0I . . . B 2 6.758 0.347 21.443 1 66.61 ? C04 Y0I 401 A 1 HETATM 14 C C05 Y0I . . . B 2 7.899 1.358 21.66 1 71.93 ? C05 Y0I 401 A 1 HETATM 15 N N06 Y0I . . . B 2 7.811 2.457 22.653 1 65.95 ? N06 Y0I 401 A 1 HETATM 16 C C07 Y0I . . . B 2 8.968 3.353 22.737 1 66.44 ? C07 Y0I 401 A 1 HETATM 17 C C08 Y0I . . . B 2 8.581 4.749 23.186 1 68.82 ? C08 Y0I 401 A 1 HETATM 18 C C09 Y0I . . . B 2 10.008 2.668 23.635 1 69.82 ? C09 Y0I 401 A 1 HETATM 19 C C11 Y0I . . . B 2 12.098 1.472 23.838 1 80.47 ? C11 Y0I 401 A 1 HETATM 20 C C12 Y0I . . . B 2 11.927 1.405 25.205 1 78.26 ? C12 Y0I 401 A 1 HETATM 21 C C14 Y0I . . . B 2 9.839 2.584 24.997 1 72.21 ? C14 Y0I 401 A 1 HETATM 22 O O15 Y0I . . . B 2 8.87 1.252 20.951 1 77.25 ? O15 Y0I 401 A 1 HETATM 23 C C16 Y0I . . . B 2 6.142 0.688 20.064 1 65.07 ? C16 Y0I 401 A 1 HETATM 24 N N18 Y0I . . . B 2 6.244 0.4 17.7 1 61.91 ? N18 Y0I 401 A 1 HETATM 25 C C19 Y0I . . . B 2 5.214 1.251 17.571 1 67.26 ? C19 Y0I 401 A 1 HETATM 26 C C23 Y0I . . . B 2 9.695 -1.305 21.791 1 62.61 ? C23 Y0I 401 A 1 HETATM 27 C C25 Y0I . . . B 2 10.706 -1.861 23.952 1 72.58 ? C25 Y0I 401 A 1 HETATM 28 C C27 Y0I . . . B 2 11.771 -2.591 26.184 1 84.36 ? C27 Y0I 401 A 1 HETATM 29 C C29 Y0I . . . B 2 14.153 -2.877 26.443 1 81.22 ? C29 Y0I 401 A 1 HETATM 30 C C30 Y0I . . . B 2 14.332 -2.517 25.113 1 84.78 ? C30 Y0I 401 A 1 HETATM 31 C C31 Y0I . . . B 2 13.233 -2.184 24.318 1 89.22 ? C31 Y0I 401 A 1 HETATM 32 C C32 Y0I . . . B 2 9.439 -1.892 24.531 1 73.62 ? C32 Y0I 401 A 1 HETATM 33 C C33 Y0I . . . B 2 8.302 -1.621 23.758 1 69.88 ? C33 Y0I 401 A 1 HETATM 34 C C34 Y0I . . . B 2 6.931 -3.689 21.474 1 64.74 ? C34 Y0I 401 A 1 HETATM 35 C C35 Y0I . . . B 2 7.064 -4.426 20.118 1 68.11 ? C35 Y0I 401 A 1 HETATM 36 N N37 Y0I . . . B 2 6.135 -5.242 19.889 1 65.23 ? N37 Y0I 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 721 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #