data_8FIW # _model_server_result.job_id 2tqu4LwDs_7vRKj325jzEA _model_server_result.datetime_utc '2024-10-18 16:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8FIW # _exptl.entry_id 8FIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.554 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-([1,1'-biphenyl]-4-yl)-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]prop-2-enamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.67 _cell.angle_gamma 90 _cell.entry_id 8FIW _cell.length_a 45.16 _cell.length_b 53.355 _cell.length_c 114.462 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C35 Y0E . A Y0E 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C35 Y0E . B Y0E 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.63 ? covale ? covale3 B SG CYS 145 B CYS 145 1_555 E C35 Y1E . B Y1E 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.623 ? # _chem_comp.formula 'C30 H27 N3 O2' _chem_comp.formula_weight 461.554 _chem_comp.id Y0E _chem_comp.mon_nstd_flag . _chem_comp.name "N-([1,1'-biphenyl]-4-yl)-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FIW _atom_sites.fract_transf_matrix[1][1] 0.022143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004173 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y0E A 1 401 401 Y0E LIG . D 2 Y0E B 1 401 401 Y0E Y0E . E 3 Y1E B 1 402 402 Y1E LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Y0E . A . D 2 -26.401 -1.223 13.831 0.5 52.87 ? C10 Y0E 401 B 1 HETATM 2 C C13 Y0E . A . D 2 -25.619 -1.761 11.238 0.5 53.61 ? C13 Y0E 401 B 1 HETATM 3 C C17 Y0E . A . D 2 -21.929 0.108 17.905 0.5 52.92 ? C17 Y0E 401 B 1 HETATM 4 C C20 Y0E . A . D 2 -22.372 -1.349 20.152 0.5 52.72 ? C20 Y0E 401 B 1 HETATM 5 C C21 Y0E . A . D 2 -23.461 -1.056 19.346 0.5 53.12 ? C21 Y0E 401 B 1 HETATM 6 C C22 Y0E . A . D 2 -24.927 1.734 15.562 0.5 63.13 ? C22 Y0E 401 B 1 HETATM 7 C C24 Y0E . A . D 2 -24.584 1.935 13.21 0.5 62.9 ? C24 Y0E 401 B 1 HETATM 8 C C26 Y0E . A . D 2 -26.468 2.502 11.649 0.5 65.61 ? C26 Y0E 401 B 1 HETATM 9 C C28 Y0E . A . D 2 -26.147 2.467 9.272 0.5 62.29 ? C28 Y0E 401 B 1 HETATM 10 O O01 Y0E . A . D 2 -23.513 2.25 18.814 0.5 65.4 ? O01 Y0E 401 B 1 HETATM 11 C C02 Y0E . A . D 2 -23.948 2.503 17.75 0.5 63.76 ? C02 Y0E 401 B 1 HETATM 12 N N03 Y0E . A . D 2 -24.406 1.444 16.875 0.5 62.22 ? N03 Y0E 401 B 1 HETATM 13 C C04 Y0E . A . D 2 -24.339 0.049 17.245 0.5 57.8 ? C04 Y0E 401 B 1 HETATM 14 C C05 Y0E . A . D 2 -24.233 -0.864 16.034 0.5 57.81 ? C05 Y0E 401 B 1 HETATM 15 N N06 Y0E . A . D 2 -24.984 -2.117 15.925 0.5 56.87 ? N06 Y0E 401 B 1 HETATM 16 C C07 Y0E . A . D 2 -24.812 -2.942 14.744 0.5 53.21 ? C07 Y0E 401 B 1 HETATM 17 C C08 Y0E . A . D 2 -25.443 -4.319 14.947 0.5 53.18 ? C08 Y0E 401 B 1 HETATM 18 C C09 Y0E . A . D 2 -25.445 -2.189 13.577 0.5 53.5 ? C09 Y0E 401 B 1 HETATM 19 C C11 Y0E . A . D 2 -26.968 -0.524 12.787 0.5 52.44 ? C11 Y0E 401 B 1 HETATM 20 C C12 Y0E . A . D 2 -26.577 -0.795 11.49 0.5 54.31 ? C12 Y0E 401 B 1 HETATM 21 C C14 Y0E . A . D 2 -25.046 -2.455 12.284 0.5 53.48 ? C14 Y0E 401 B 1 HETATM 22 O O15 Y0E . A . D 2 -23.483 -0.541 15.172 0.5 61.32 ? O15 Y0E 401 B 1 HETATM 23 C C16 Y0E . A . D 2 -23.219 -0.305 18.207 0.5 55.08 ? C16 Y0E 401 B 1 HETATM 24 N N18 Y0E . A . D 2 -20.92 -0.186 18.691 0.5 50.41 ? N18 Y0E 401 B 1 HETATM 25 C C19 Y0E . A . D 2 -21.114 -0.892 19.782 0.5 51.21 ? C19 Y0E 401 B 1 HETATM 26 C C23 Y0E . A . D 2 -24.08 1.687 14.467 0.5 62.7 ? C23 Y0E 401 B 1 HETATM 27 C C25 Y0E . A . D 2 -25.929 2.223 13.051 0.5 64.28 ? C25 Y0E 401 B 1 HETATM 28 C C27 Y0E . A . D 2 -25.674 2.219 10.544 0.5 64.26 ? C27 Y0E 401 B 1 HETATM 29 C C29 Y0E . A . D 2 -27.419 2.994 9.1 0.5 62.77 ? C29 Y0E 401 B 1 HETATM 30 C C30 Y0E . A . D 2 -28.212 3.269 10.196 0.5 62.37 ? C30 Y0E 401 B 1 HETATM 31 C C31 Y0E . A . D 2 -27.741 3.023 11.475 0.5 63.86 ? C31 Y0E 401 B 1 HETATM 32 C C32 Y0E . A . D 2 -26.773 2.269 14.154 0.5 65.42 ? C32 Y0E 401 B 1 HETATM 33 C C33 Y0E . A . D 2 -26.273 2.02 15.42 0.5 61.32 ? C33 Y0E 401 B 1 HETATM 34 C C34 Y0E . A . D 2 -23.987 3.954 17.29 0.5 63.68 ? C34 Y0E 401 B 1 HETATM 35 C C35 Y0E . A . D 2 -22.923 4.432 16.655 0.5 59.12 ? C35 Y0E 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #