data_8FIW # _model_server_result.job_id ekrkjWeh54CHlga9gOU0BA _model_server_result.datetime_utc '2024-10-18 16:21:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8FIW # _exptl.entry_id 8FIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.554 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-([1,1'-biphenyl]-4-yl)-N-[(1S)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]prop-2-enamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.67 _cell.angle_gamma 90 _cell.entry_id 8FIW _cell.length_a 45.16 _cell.length_b 53.355 _cell.length_c 114.462 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C35 Y0E . A Y0E 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C35 Y0E . B Y0E 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.63 ? covale ? covale3 B SG CYS 145 B CYS 145 1_555 E C35 Y1E . B Y1E 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.623 ? # _chem_comp.formula 'C30 H27 N3 O2' _chem_comp.formula_weight 461.554 _chem_comp.id Y1E _chem_comp.mon_nstd_flag . _chem_comp.name "N-([1,1'-biphenyl]-4-yl)-N-[(1S)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FIW _atom_sites.fract_transf_matrix[1][1] 0.022143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004173 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y0E A 1 401 401 Y0E LIG . D 2 Y0E B 1 401 401 Y0E Y0E . E 3 Y1E B 1 402 402 Y1E LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Y1E . B . E 3 -24.994 -4.898 19.092 0.5 71.48 ? C10 Y1E 402 B 1 HETATM 2 C C13 Y1E . B . E 3 -26.772 -3.749 20.868 0.5 73.41 ? C13 Y1E 402 B 1 HETATM 3 C C17 Y1E . B . E 3 -21.405 -0.152 17.624 0.5 71.19 ? C17 Y1E 402 B 1 HETATM 4 C C20 Y1E . B . E 3 -22.212 -1.212 19.996 0.5 71.1 ? C20 Y1E 402 B 1 HETATM 5 C C21 Y1E . B . E 3 -23.178 -0.929 19.046 0.5 72.39 ? C21 Y1E 402 B 1 HETATM 6 C C22 Y1E . B . E 3 -24.595 1.697 15.296 0.5 87.85 ? C22 Y1E 402 B 1 HETATM 7 C C24 Y1E . B . E 3 -24.556 1.515 12.921 0.5 89.16 ? C24 Y1E 402 B 1 HETATM 8 C C26 Y1E . B . E 3 -26.314 2.564 11.492 0.5 91.58 ? C26 Y1E 402 B 1 HETATM 9 C C28 Y1E . B . E 3 -26.126 2.51 9.107 0.5 87.81 ? C28 Y1E 402 B 1 HETATM 10 O O01 Y1E . B . E 3 -23.097 1.931 18.562 0.5 90.16 ? O01 Y1E 402 B 1 HETATM 11 C C02 Y1E . B . E 3 -23.604 2.303 17.559 0.5 85.17 ? C02 Y1E 402 B 1 HETATM 12 N N03 Y1E . B . E 3 -23.986 1.339 16.552 0.5 84.54 ? N03 Y1E 402 B 1 HETATM 13 C C04 Y1E . B . E 3 -23.758 -0.066 16.748 0.5 76.8 ? C04 Y1E 402 B 1 HETATM 14 C C05 Y1E . B . E 3 -24.988 -0.972 16.764 0.5 77.61 ? C05 Y1E 402 B 1 HETATM 15 N N06 Y1E . B . E 3 -24.736 -2.35 17.154 0.5 77.52 ? N06 Y1E 402 B 1 HETATM 16 C C07 Y1E . B . E 3 -25.746 -3.376 17.218 0.5 73.17 ? C07 Y1E 402 B 1 HETATM 17 C C08 Y1E . B . E 3 -25.299 -4.49 16.269 0.5 72.09 ? C08 Y1E 402 B 1 HETATM 18 C C09 Y1E . B . E 3 -25.822 -3.876 18.664 0.5 71.68 ? C09 Y1E 402 B 1 HETATM 19 C C11 Y1E . B . E 3 -25.055 -5.348 20.406 0.5 70.75 ? C11 Y1E 402 B 1 HETATM 20 C C12 Y1E . B . E 3 -25.941 -4.774 21.295 0.5 69.66 ? C12 Y1E 402 B 1 HETATM 21 C C14 Y1E . B . E 3 -26.714 -3.298 19.556 0.5 72.72 ? C14 Y1E 402 B 1 HETATM 22 O O15 Y1E . B . E 3 -26.072 -0.583 16.46 0.5 74.58 ? O15 Y1E 402 B 1 HETATM 23 C C16 Y1E . B . E 3 -22.753 -0.389 17.844 0.5 73.95 ? C16 Y1E 402 B 1 HETATM 24 N N18 Y1E . B . E 3 -20.517 -0.432 18.548 0.5 68.65 ? N18 Y1E 402 B 1 HETATM 25 C C19 Y1E . B . E 3 -20.886 -0.945 19.698 0.5 69.06 ? C19 Y1E 402 B 1 HETATM 26 C C23 Y1E . B . E 3 -23.997 1.229 14.142 0.5 87.86 ? C23 Y1E 402 B 1 HETATM 27 C C25 Y1E . B . E 3 -25.713 2.266 12.861 0.5 90.84 ? C25 Y1E 402 B 1 HETATM 28 C C27 Y1E . B . E 3 -25.59 2.253 10.353 0.5 88.91 ? C27 Y1E 402 B 1 HETATM 29 C C29 Y1E . B . E 3 -27.391 3.069 8.998 0.5 88.58 ? C29 Y1E 402 B 1 HETATM 30 C C30 Y1E . B . E 3 -28.117 3.37 10.136 0.5 88.29 ? C30 Y1E 402 B 1 HETATM 31 C C31 Y1E . B . E 3 -27.581 3.115 11.387 0.5 90.05 ? C31 Y1E 402 B 1 HETATM 32 C C32 Y1E . B . E 3 -26.32 2.725 14.021 0.5 92.22 ? C32 Y1E 402 B 1 HETATM 33 C C33 Y1E . B . E 3 -25.763 2.436 15.253 0.5 87.39 ? C33 Y1E 402 B 1 HETATM 34 C C34 Y1E . B . E 3 -23.823 3.791 17.321 0.5 81.13 ? C34 Y1E 402 B 1 HETATM 35 C C35 Y1E . B . E 3 -22.875 4.477 16.708 0.5 70.15 ? C35 Y1E 402 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #