data_8FJ7
#
_model_server_result.job_id            QcGs0QekGT-NQ_pxDD4_3g 
_model_server_result.datetime_utc      '2025-07-16 10:40:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    8FJ7 
#
_exptl.entry_id    8FJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1038.846 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[7,8-dimethyl-2,4-dioxo-5-{3-[3-(phenylcarbamoyl)phenyl]propanoyl}-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FJ7 
_cell.length_a            119.536 
_cell.length_b            179.04 
_cell.length_c            234.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C43 H48 N10 O17 P2' 
_chem_comp.formula_weight    1038.846 
_chem_comp.id                Y0Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[7,8-dimethyl-2,4-dioxo-5-{3-[3-(phenylcarbamoyl)phenyl]propanoyl}-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 Y0Z sing 374 n n 
O1 C9 Y0Z doub 375 n n 
C7 C6 Y0Z doub 376 n y 
C7 C2 Y0Z sing 377 n y 
C6 C5 Y0Z sing 378 n y 
C1 C2 Y0Z sing 379 n n 
C9 C10 Y0Z sing 380 n n 
C9 N1 Y0Z sing 381 n n 
C2 C3 Y0Z doub 382 n y 
C5 N1 Y0Z sing 383 n n 
C5 C4 Y0Z doub 384 n y 
C10 C11 Y0Z sing 385 n n 
N1 C25 Y0Z sing 386 n n 
O4 C28 Y0Z doub 387 n n 
C11 C12 Y0Z sing 388 n n 
C3 C4 Y0Z sing 389 n y 
C4 N5 Y0Z sing 390 n n 
C25 C28 Y0Z sing 391 n n 
C25 C26 Y0Z doub 392 n n 
C28 N4 Y0Z sing 393 n n 
C12 C24 Y0Z doub 394 n y 
C12 C13 Y0Z sing 395 n y 
C24 C16 Y0Z sing 396 n y 
N5 C26 Y0Z sing 397 n n 
N5 C29 Y0Z sing 398 n n 
C26 N3 Y0Z sing 399 n n 
C22 C23 Y0Z doub 400 n y 
C22 C21 Y0Z sing 401 n y 
N4 C27 Y0Z sing 402 n n 
O2 C17 Y0Z doub 403 n n 
C13 C14 Y0Z doub 404 n y 
C23 C18 Y0Z sing 405 n y 
C16 C17 Y0Z sing 406 n n 
C16 C15 Y0Z doub 407 n y 
C21 C20 Y0Z doub 408 n y 
C17 N2 Y0Z sing 409 n n 
O5 C30 Y0Z sing 410 n n 
C29 C30 Y0Z sing 411 n n 
N3 C27 Y0Z sing 412 n n 
C27 O3 Y0Z doub 413 n n 
C14 C15 Y0Z sing 414 n y 
C18 N2 Y0Z sing 415 n n 
C18 C19 Y0Z doub 416 n y 
C30 C31 Y0Z sing 417 n n 
C20 C19 Y0Z sing 418 n y 
O16 C42 Y0Z sing 419 n n 
C31 O6 Y0Z sing 420 n n 
C31 C32 Y0Z sing 421 n n 
O7 C32 Y0Z sing 422 n n 
C42 C43 Y0Z sing 423 n n 
C42 C36 Y0Z sing 424 n n 
O12 P2 Y0Z doub 425 n n 
C37 N7 Y0Z doub 426 n y 
C37 N6 Y0Z sing 427 n y 
O13 P2 Y0Z sing 428 n n 
C43 O17 Y0Z sing 429 n n 
C43 C35 Y0Z sing 430 n n 
N7 C38 Y0Z sing 431 n y 
C32 C33 Y0Z sing 432 n n 
P2 O14 Y0Z sing 433 n n 
P2 O11 Y0Z sing 434 n n 
N6 C36 Y0Z sing 435 n n 
N6 C41 Y0Z sing 436 n y 
C33 O8 Y0Z sing 437 n n 
C36 O15 Y0Z sing 438 n n 
C38 C41 Y0Z doub 439 n y 
C38 C39 Y0Z sing 440 n y 
N8 C39 Y0Z sing 441 n n 
C41 N10 Y0Z sing 442 n y 
C39 N9 Y0Z doub 443 n y 
O14 C34 Y0Z sing 444 n n 
C35 C34 Y0Z sing 445 n n 
C35 O15 Y0Z sing 446 n n 
O11 P1 Y0Z sing 447 n n 
O8 P1 Y0Z sing 448 n n 
N10 C40 Y0Z doub 449 n y 
N9 C40 Y0Z sing 450 n y 
P1 O10 Y0Z doub 451 n n 
P1 O9 Y0Z sing 452 n n 
C14 H1 Y0Z sing 453 n n 
C6 H2 Y0Z sing 454 n n 
C11 H3 Y0Z sing 455 n n 
C11 H4 Y0Z sing 456 n n 
C8 H5 Y0Z sing 457 n n 
C8 H6 Y0Z sing 458 n n 
C8 H7 Y0Z sing 459 n n 
C10 H8 Y0Z sing 460 n n 
C10 H9 Y0Z sing 461 n n 
C13 H10 Y0Z sing 462 n n 
N2 H11 Y0Z sing 463 n n 
C3 H12 Y0Z sing 464 n n 
N3 H13 Y0Z sing 465 n n 
C1 H14 Y0Z sing 466 n n 
C1 H15 Y0Z sing 467 n n 
C1 H16 Y0Z sing 468 n n 
C15 H17 Y0Z sing 469 n n 
C19 H18 Y0Z sing 470 n n 
C20 H19 Y0Z sing 471 n n 
C21 H20 Y0Z sing 472 n n 
C22 H21 Y0Z sing 473 n n 
C23 H22 Y0Z sing 474 n n 
C24 H23 Y0Z sing 475 n n 
C29 H24 Y0Z sing 476 n n 
C29 H25 Y0Z sing 477 n n 
C30 H26 Y0Z sing 478 n n 
C31 H27 Y0Z sing 479 n n 
C32 H28 Y0Z sing 480 n n 
C33 H29 Y0Z sing 481 n n 
C33 H30 Y0Z sing 482 n n 
C34 H31 Y0Z sing 483 n n 
C34 H32 Y0Z sing 484 n n 
C35 H33 Y0Z sing 485 n n 
C36 H34 Y0Z sing 486 n n 
C37 H35 Y0Z sing 487 n n 
C40 H36 Y0Z sing 488 n n 
C42 H37 Y0Z sing 489 n n 
C43 H38 Y0Z sing 490 n n 
N4 H39 Y0Z sing 491 n n 
N8 H40 Y0Z sing 492 n n 
N8 H41 Y0Z sing 493 n n 
O13 H42 Y0Z sing 494 n n 
O16 H43 Y0Z sing 495 n n 
O17 H44 Y0Z sing 496 n n 
O5 H45 Y0Z sing 497 n n 
O6 H46 Y0Z sing 498 n n 
O7 H47 Y0Z sing 499 n n 
O9 H48 Y0Z sing 500 n n 
#
_atom_sites.entry_id                     8FJ7 
_atom_sites.fract_transf_matrix[1][1]    0.008366 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           Y0Z 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       Y0Z 
_pdbx_nonpoly_scheme.auth_mon_id      DRG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 Y0Z . . . D 4 -6.783 60.096 82.943 1 88.82 ? C4 Y0Z 901 A 1 
HETATM 2 C C14 Y0Z . . . D 4 -6.939 54.025 84.194 1 105.4 ? C14 Y0Z 901 A 1 
HETATM 3 C C5 Y0Z . . . D 4 -7.348 59.451 81.892 1 89.09 ? C5 Y0Z 901 A 1 
HETATM 4 C C6 Y0Z . . . D 4 -7.223 59.928 80.603 1 83.87 ? C6 Y0Z 901 A 1 
HETATM 5 C C11 Y0Z . . . D 4 -5.433 55.815 81.233 1 94.81 ? C11 Y0Z 901 A 1 
HETATM 6 C C7 Y0Z . . . D 4 -6.643 61.131 80.378 1 92.43 ? C7 Y0Z 901 A 1 
HETATM 7 C C8 Y0Z . . . D 4 -6.557 61.681 78.991 1 84.21 ? C8 Y0Z 901 A 1 
HETATM 8 C C9 Y0Z . . . D 4 -7.413 57.349 81.163 1 97.29 ? C9 Y0Z 901 A 1 
HETATM 9 C C10 Y0Z . . . D 4 -5.924 57.219 81.111 1 94.49 ? C10 Y0Z 901 A 1 
HETATM 10 C C12 Y0Z . . . D 4 -5.584 55.125 82.56 1 99.87 ? C12 Y0Z 901 A 1 
HETATM 11 C C13 Y0Z . . . D 4 -6.821 54.731 83.018 1 105.19 ? C13 Y0Z 901 A 1 
HETATM 12 N N1 Y0Z . . . D 4 -7.841 58.255 82.075 1 95.23 ? N1 Y0Z 901 A 1 
HETATM 13 N N2 Y0Z . . . D 4 -2.204 54.265 84.918 1 103.87 ? N2 Y0Z 901 A 1 
HETATM 14 C C3 Y0Z . . . D 4 -6.196 61.333 82.74 1 92.55 ? C3 Y0Z 901 A 1 
HETATM 15 N N3 Y0Z . . . D 4 -8.1 58.101 85.671 1 86.38 ? N3 Y0Z 901 A 1 
HETATM 16 C C1 Y0Z . . . D 4 -5.449 63.182 81.244 1 81.53 ? C1 Y0Z 901 A 1 
HETATM 17 C C15 Y0Z . . . D 4 -5.822 53.694 84.927 1 105.42 ? C15 Y0Z 901 A 1 
HETATM 18 C C16 Y0Z . . . D 4 -4.57 54.07 84.482 1 106.44 ? C16 Y0Z 901 A 1 
HETATM 19 C C17 Y0Z . . . D 4 -3.361 53.687 85.267 1 107.19 ? C17 Y0Z 901 A 1 
HETATM 20 C C18 Y0Z . . . D 4 -0.967 54.137 85.579 1 109.36 ? C18 Y0Z 901 A 1 
HETATM 21 C C19 Y0Z . . . D 4 -0.883 53.484 86.789 1 110.06 ? C19 Y0Z 901 A 1 
HETATM 22 C C2 Y0Z . . . D 4 -6.107 61.856 81.48 1 96.43 ? C2 Y0Z 901 A 1 
HETATM 23 C C20 Y0Z . . . D 4 0.336 53.379 87.432 1 108.41 ? C20 Y0Z 901 A 1 
HETATM 24 C C21 Y0Z . . . D 4 1.47 53.919 86.886 1 100.24 ? C21 Y0Z 901 A 1 
HETATM 25 C C22 Y0Z . . . D 4 1.389 54.57 85.685 1 104.02 ? C22 Y0Z 901 A 1 
HETATM 26 C C23 Y0Z . . . D 4 0.177 54.683 85.032 1 102.6 ? C23 Y0Z 901 A 1 
HETATM 27 C C24 Y0Z . . . D 4 -4.464 54.759 83.284 1 104.83 ? C24 Y0Z 901 A 1 
HETATM 28 C C25 Y0Z . . . D 4 -8.283 57.878 83.355 1 86.39 ? C25 Y0Z 901 A 1 
HETATM 29 C C26 Y0Z . . . D 4 -7.737 58.49 84.433 1 87.71 ? C26 Y0Z 901 A 1 
HETATM 30 C C27 Y0Z . . . D 4 -8.952 57.059 85.856 1 87.03 ? C27 Y0Z 901 A 1 
HETATM 31 C C28 Y0Z . . . D 4 -9.067 56.831 83.473 1 90 ? C28 Y0Z 901 A 1 
HETATM 32 C C29 Y0Z . . . D 4 -6.285 60.237 85.364 1 82.55 ? C29 Y0Z 901 A 1 
HETATM 33 C C30 Y0Z . . . D 4 -7.246 61.104 86.093 1 77.51 ? C30 Y0Z 901 A 1 
HETATM 34 C C31 Y0Z . . . D 4 -6.475 62.084 86.96 1 77.95 ? C31 Y0Z 901 A 1 
HETATM 35 C C32 Y0Z . . . D 4 -7.282 62.768 88.044 1 81.32 ? C32 Y0Z 901 A 1 
HETATM 36 C C33 Y0Z . . . D 4 -6.403 63.682 88.851 1 81.08 ? C33 Y0Z 901 A 1 
HETATM 37 C C34 Y0Z . . . D 4 -6.096 69.96 88.975 1 71.08 ? C34 Y0Z 901 A 1 
HETATM 38 C C35 Y0Z . . . D 4 -6.874 71.232 89.069 1 66.74 ? C35 Y0Z 901 A 1 
HETATM 39 C C36 Y0Z . . . D 4 -6.221 73.323 88.453 1 75.34 ? C36 Y0Z 901 A 1 
HETATM 40 C C37 Y0Z . . . D 4 -3.856 73.864 87.798 1 74.27 ? C37 Y0Z 901 A 1 
HETATM 41 C C38 Y0Z . . . D 4 -3.639 75.777 88.652 1 70.02 ? C38 Y0Z 901 A 1 
HETATM 42 C C39 Y0Z . . . D 4 -3.257 77.035 89.113 1 67.09 ? C39 Y0Z 901 A 1 
HETATM 43 C C40 Y0Z . . . D 4 -5.358 77.215 90.015 1 71.24 ? C40 Y0Z 901 A 1 
HETATM 44 C C41 Y0Z . . . D 4 -4.912 75.374 88.941 1 64.75 ? C41 Y0Z 901 A 1 
HETATM 45 C C42 Y0Z . . . D 4 -6.606 72.61 87.184 1 76.32 ? C42 Y0Z 901 A 1 
HETATM 46 C C43 Y0Z . . . D 4 -7.614 71.663 87.807 1 71.81 ? C43 Y0Z 901 A 1 
HETATM 47 N N10 Y0Z . . . D 4 -5.832 76.05 89.622 1 73.93 ? N10 Y0Z 901 A 1 
HETATM 48 N N4 Y0Z . . . D 4 -9.421 56.454 84.74 1 92.76 ? N4 Y0Z 901 A 1 
HETATM 49 N N5 Y0Z . . . D 4 -6.923 59.56 84.229 1 89.84 ? N5 Y0Z 901 A 1 
HETATM 50 N N6 Y0Z . . . D 4 -5.049 74.152 88.376 1 69.45 ? N6 Y0Z 901 A 1 
HETATM 51 N N7 Y0Z . . . D 4 -2.981 74.817 87.923 1 73.31 ? N7 Y0Z 901 A 1 
HETATM 52 N N8 Y0Z . . . D 4 -2.071 77.566 88.904 1 57.77 ? N8 Y0Z 901 A 1 
HETATM 53 N N9 Y0Z . . . D 4 -4.153 77.74 89.811 1 64.59 ? N9 Y0Z 901 A 1 
HETATM 54 O O1 Y0Z . . . D 4 -8.162 56.747 80.435 1 92.07 ? O1 Y0Z 901 A 1 
HETATM 55 O O10 Y0Z . . . D 4 -5.1 65.042 90.833 1 70.02 -1 O10 Y0Z 901 A 1 
HETATM 56 O O11 Y0Z . . . D 4 -5.833 66.862 89.455 1 67.08 ? O11 Y0Z 901 A 1 
HETATM 57 O O12 Y0Z . . . D 4 -5.637 67.959 87.329 1 66.64 ? O12 Y0Z 901 A 1 
HETATM 58 O O13 Y0Z . . . D 4 -7.846 66.887 88.073 1 69.55 -1 O13 Y0Z 901 A 1 
HETATM 59 O O14 Y0Z . . . D 4 -7 68.895 89.132 1 82.17 ? O14 Y0Z 901 A 1 
HETATM 60 O O15 Y0Z . . . D 4 -5.926 72.278 89.317 1 74.46 ? O15 Y0Z 901 A 1 
HETATM 61 O O16 Y0Z . . . D 4 -7.219 73.519 86.311 1 76.37 ? O16 Y0Z 901 A 1 
HETATM 62 O O17 Y0Z . . . D 4 -8.717 72.466 88.18 1 74.92 ? O17 Y0Z 901 A 1 
HETATM 63 O O2 Y0Z . . . D 4 -3.434 52.851 86.148 1 116.41 ? O2 Y0Z 901 A 1 
HETATM 64 O O3 Y0Z . . . D 4 -9.282 56.702 86.962 1 82.45 ? O3 Y0Z 901 A 1 
HETATM 65 O O4 Y0Z . . . D 4 -9.527 56.25 82.516 1 95.91 ? O4 Y0Z 901 A 1 
HETATM 66 O O5 Y0Z . . . D 4 -7.857 61.854 85.137 1 78.56 ? O5 Y0Z 901 A 1 
HETATM 67 O O6 Y0Z . . . D 4 -5.522 61.377 87.636 1 77.68 ? O6 Y0Z 901 A 1 
HETATM 68 O O7 Y0Z . . . D 4 -8.341 63.501 87.452 1 85.41 ? O7 Y0Z 901 A 1 
HETATM 69 O O8 Y0Z . . . D 4 -7.086 64.824 89.357 1 73.74 ? O8 Y0Z 901 A 1 
HETATM 70 O O9 Y0Z . . . D 4 -7.317 66.152 91.322 1 82.1 ? O9 Y0Z 901 A 1 
HETATM 71 P P1 Y0Z . . . D 4 -6.308 65.707 90.37 1 80.46 ? P1 Y0Z 901 A 1 
HETATM 72 P P2 Y0Z . . . D 4 -6.615 67.618 88.352 1 104.48 ? P2 Y0Z 901 A 1 
#
_model_server_stats.io_time_ms              104 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           72 
#