data_8FJT # _model_server_result.job_id 0AnhHGuB066nRJP5Xdmxqw _model_server_result.datetime_utc '2024-10-10 09:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 8FJT # _exptl.entry_id 8FJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FJT _cell.length_a 160.389 _cell.length_b 160.389 _cell.length_c 208.748 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 269 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 280 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 803 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.278 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 295 n y N1 C6 PLP sing 296 n y C2 C2A PLP sing 297 n n C2 C3 PLP sing 298 n y C2A H2A1 PLP sing 299 n n C2A H2A2 PLP sing 300 n n C2A H2A3 PLP sing 301 n n C3 O3 PLP sing 302 n n C3 C4 PLP doub 303 n y O3 HO3 PLP sing 304 n n C4 C4A PLP sing 305 n n C4 C5 PLP sing 306 n y C4A O4A PLP doub 307 n n C4A H4A PLP sing 308 n n C5 C6 PLP doub 309 n y C5 C5A PLP sing 310 n n C6 H6 PLP sing 311 n n C5A O4P PLP sing 312 n n C5A H5A1 PLP sing 313 n n C5A H5A2 PLP sing 314 n n O4P P PLP sing 315 n n P O1P PLP doub 316 n n P O2P PLP sing 317 n n P O3P PLP sing 318 n n O2P HOP2 PLP sing 319 n n O3P HOP3 PLP sing 320 n n # _atom_sites.entry_id 8FJT _atom_sites.fract_transf_matrix[1][1] 0.006235 _atom_sites.fract_transf_matrix[1][2] 0.0036 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLG A 1 601 601 PLG PLG . D 3 Y72 A 1 602 602 Y72 Y72 . E 3 Y72 B 1 801 801 Y72 Y72 . F 4 GLY B 1 802 802 GLY GLY . G 5 PLP B 1 803 803 PLP PLP . H 6 HOH A 1 701 701 HOH HOH . H 6 HOH A 2 702 702 HOH HOH . H 6 HOH A 3 703 703 HOH HOH . H 6 HOH A 4 704 704 HOH HOH . H 6 HOH A 5 705 705 HOH HOH . H 6 HOH A 6 706 706 HOH HOH . H 6 HOH A 7 707 707 HOH HOH . H 6 HOH A 8 708 708 HOH HOH . H 6 HOH A 9 709 709 HOH HOH . H 6 HOH A 10 710 710 HOH HOH . H 6 HOH A 11 711 711 HOH HOH . H 6 HOH A 12 712 712 HOH HOH . H 6 HOH A 13 713 713 HOH HOH . H 6 HOH A 14 714 714 HOH HOH . H 6 HOH A 15 715 715 HOH HOH . H 6 HOH A 16 716 716 HOH HOH . H 6 HOH A 17 717 717 HOH HOH . H 6 HOH A 18 718 718 HOH HOH . H 6 HOH A 19 719 719 HOH HOH . H 6 HOH A 20 720 720 HOH HOH . H 6 HOH A 21 721 721 HOH HOH . H 6 HOH A 22 722 722 HOH HOH . H 6 HOH A 23 723 723 HOH HOH . H 6 HOH A 24 724 724 HOH HOH . H 6 HOH A 25 725 725 HOH HOH . H 6 HOH A 26 726 726 HOH HOH . H 6 HOH A 27 727 727 HOH HOH . H 6 HOH A 28 728 728 HOH HOH . H 6 HOH A 29 729 729 HOH HOH . H 6 HOH A 30 730 730 HOH HOH . H 6 HOH A 31 731 731 HOH HOH . H 6 HOH A 32 732 732 HOH HOH . H 6 HOH A 33 733 733 HOH HOH . H 6 HOH A 34 734 734 HOH HOH . H 6 HOH A 35 735 735 HOH HOH . H 6 HOH A 36 736 736 HOH HOH . H 6 HOH A 37 737 737 HOH HOH . H 6 HOH A 38 738 738 HOH HOH . H 6 HOH A 39 739 739 HOH HOH . H 6 HOH A 40 740 740 HOH HOH . H 6 HOH A 41 741 741 HOH HOH . H 6 HOH A 42 742 742 HOH HOH . H 6 HOH A 43 743 743 HOH HOH . H 6 HOH A 44 744 744 HOH HOH . H 6 HOH A 45 745 745 HOH HOH . H 6 HOH A 46 746 746 HOH HOH . H 6 HOH A 47 747 747 HOH HOH . H 6 HOH A 48 748 748 HOH HOH . H 6 HOH A 49 749 749 HOH HOH . H 6 HOH A 50 750 750 HOH HOH . H 6 HOH A 51 751 751 HOH HOH . H 6 HOH A 52 752 752 HOH HOH . H 6 HOH A 53 753 753 HOH HOH . H 6 HOH A 54 754 754 HOH HOH . H 6 HOH A 55 755 755 HOH HOH . H 6 HOH A 56 756 756 HOH HOH . H 6 HOH A 57 757 757 HOH HOH . H 6 HOH A 58 758 758 HOH HOH . H 6 HOH A 59 759 759 HOH HOH . H 6 HOH A 60 760 760 HOH HOH . H 6 HOH A 61 761 761 HOH HOH . H 6 HOH A 62 762 762 HOH HOH . H 6 HOH A 63 763 763 HOH HOH . H 6 HOH A 64 764 764 HOH HOH . H 6 HOH A 65 765 765 HOH HOH . H 6 HOH A 66 766 766 HOH HOH . H 6 HOH A 67 767 767 HOH HOH . H 6 HOH A 68 768 768 HOH HOH . H 6 HOH A 69 769 769 HOH HOH . H 6 HOH A 70 770 770 HOH HOH . H 6 HOH A 71 771 771 HOH HOH . H 6 HOH A 72 772 772 HOH HOH . H 6 HOH A 73 773 773 HOH HOH . H 6 HOH A 74 774 774 HOH HOH . H 6 HOH A 75 775 775 HOH HOH . H 6 HOH A 76 776 776 HOH HOH . H 6 HOH A 77 777 777 HOH HOH . H 6 HOH A 78 778 778 HOH HOH . H 6 HOH A 79 779 779 HOH HOH . H 6 HOH A 80 780 780 HOH HOH . H 6 HOH A 81 781 781 HOH HOH . H 6 HOH A 82 782 782 HOH HOH . H 6 HOH A 83 783 783 HOH HOH . H 6 HOH A 84 784 784 HOH HOH . H 6 HOH A 85 785 785 HOH HOH . H 6 HOH A 86 786 786 HOH HOH . H 6 HOH A 87 787 787 HOH HOH . H 6 HOH A 88 788 788 HOH HOH . H 6 HOH A 89 789 789 HOH HOH . H 6 HOH A 90 790 790 HOH HOH . H 6 HOH A 91 791 791 HOH HOH . H 6 HOH A 92 792 792 HOH HOH . H 6 HOH A 93 793 793 HOH HOH . H 6 HOH A 94 794 794 HOH HOH . H 6 HOH A 95 795 795 HOH HOH . H 6 HOH A 96 796 796 HOH HOH . H 6 HOH A 97 797 797 HOH HOH . H 6 HOH A 98 798 798 HOH HOH . H 6 HOH A 99 799 799 HOH HOH . H 6 HOH A 100 800 800 HOH HOH . H 6 HOH A 101 801 801 HOH HOH . H 6 HOH A 102 802 802 HOH HOH . H 6 HOH A 103 803 803 HOH HOH . H 6 HOH A 104 804 804 HOH HOH . H 6 HOH A 105 805 805 HOH HOH . H 6 HOH A 106 806 806 HOH HOH . H 6 HOH A 107 807 807 HOH HOH . H 6 HOH A 108 808 808 HOH HOH . H 6 HOH A 109 809 809 HOH HOH . H 6 HOH A 110 810 810 HOH HOH . H 6 HOH A 111 811 811 HOH HOH . H 6 HOH A 112 812 812 HOH HOH . H 6 HOH A 113 813 813 HOH HOH . H 6 HOH A 114 814 814 HOH HOH . H 6 HOH A 115 815 815 HOH HOH . H 6 HOH A 116 816 816 HOH HOH . H 6 HOH A 117 817 817 HOH HOH . H 6 HOH A 118 818 818 HOH HOH . H 6 HOH A 119 819 819 HOH HOH . H 6 HOH A 120 820 820 HOH HOH . H 6 HOH A 121 821 821 HOH HOH . H 6 HOH A 122 822 822 HOH HOH . H 6 HOH A 123 823 823 HOH HOH . H 6 HOH A 124 824 824 HOH HOH . H 6 HOH A 125 825 825 HOH HOH . H 6 HOH A 126 826 826 HOH HOH . H 6 HOH A 127 827 827 HOH HOH . H 6 HOH A 128 828 828 HOH HOH . H 6 HOH A 129 829 829 HOH HOH . H 6 HOH A 130 830 830 HOH HOH . H 6 HOH A 131 831 831 HOH HOH . H 6 HOH A 132 832 832 HOH HOH . H 6 HOH A 133 833 833 HOH HOH . H 6 HOH A 134 834 834 HOH HOH . H 6 HOH A 135 835 835 HOH HOH . H 6 HOH A 136 836 836 HOH HOH . H 6 HOH A 137 837 837 HOH HOH . H 6 HOH A 138 838 838 HOH HOH . H 6 HOH A 139 839 839 HOH HOH . H 6 HOH A 140 840 840 HOH HOH . H 6 HOH A 141 841 841 HOH HOH . H 6 HOH A 142 842 842 HOH HOH . H 6 HOH A 143 843 843 HOH HOH . H 6 HOH A 144 844 844 HOH HOH . H 6 HOH A 145 845 845 HOH HOH . H 6 HOH A 146 846 846 HOH HOH . H 6 HOH A 147 847 847 HOH HOH . H 6 HOH A 148 848 848 HOH HOH . I 6 HOH B 1 901 901 HOH HOH . I 6 HOH B 2 902 902 HOH HOH . I 6 HOH B 3 903 903 HOH HOH . I 6 HOH B 4 904 904 HOH HOH . I 6 HOH B 5 905 905 HOH HOH . I 6 HOH B 6 906 906 HOH HOH . I 6 HOH B 7 907 907 HOH HOH . I 6 HOH B 8 908 908 HOH HOH . I 6 HOH B 9 909 909 HOH HOH . I 6 HOH B 10 910 910 HOH HOH . I 6 HOH B 11 911 911 HOH HOH . I 6 HOH B 12 912 912 HOH HOH . I 6 HOH B 13 913 913 HOH HOH . I 6 HOH B 14 914 914 HOH HOH . I 6 HOH B 15 915 915 HOH HOH . I 6 HOH B 16 916 916 HOH HOH . I 6 HOH B 17 917 917 HOH HOH . I 6 HOH B 18 918 918 HOH HOH . I 6 HOH B 19 919 919 HOH HOH . I 6 HOH B 20 920 920 HOH HOH . I 6 HOH B 21 921 921 HOH HOH . I 6 HOH B 22 922 922 HOH HOH . I 6 HOH B 23 923 923 HOH HOH . I 6 HOH B 24 924 924 HOH HOH . I 6 HOH B 25 925 925 HOH HOH . I 6 HOH B 26 926 926 HOH HOH . I 6 HOH B 27 927 927 HOH HOH . I 6 HOH B 28 928 928 HOH HOH . I 6 HOH B 29 929 929 HOH HOH . I 6 HOH B 30 930 930 HOH HOH . I 6 HOH B 31 931 931 HOH HOH . I 6 HOH B 32 932 932 HOH HOH . I 6 HOH B 33 933 933 HOH HOH . I 6 HOH B 34 934 934 HOH HOH . I 6 HOH B 35 935 935 HOH HOH . I 6 HOH B 36 936 936 HOH HOH . I 6 HOH B 37 937 937 HOH HOH . I 6 HOH B 38 938 938 HOH HOH . I 6 HOH B 39 939 939 HOH HOH . I 6 HOH B 40 940 940 HOH HOH . I 6 HOH B 41 941 941 HOH HOH . I 6 HOH B 42 942 942 HOH HOH . I 6 HOH B 43 943 943 HOH HOH . I 6 HOH B 44 944 944 HOH HOH . I 6 HOH B 45 945 945 HOH HOH . I 6 HOH B 46 946 946 HOH HOH . I 6 HOH B 47 947 947 HOH HOH . I 6 HOH B 48 948 948 HOH HOH . I 6 HOH B 49 949 949 HOH HOH . I 6 HOH B 50 950 950 HOH HOH . I 6 HOH B 51 951 951 HOH HOH . I 6 HOH B 52 952 952 HOH HOH . I 6 HOH B 53 953 953 HOH HOH . I 6 HOH B 54 954 954 HOH HOH . I 6 HOH B 55 955 955 HOH HOH . I 6 HOH B 56 956 956 HOH HOH . I 6 HOH B 57 957 957 HOH HOH . I 6 HOH B 58 958 958 HOH HOH . I 6 HOH B 59 959 959 HOH HOH . I 6 HOH B 60 960 960 HOH HOH . I 6 HOH B 61 961 961 HOH HOH . I 6 HOH B 62 962 962 HOH HOH . I 6 HOH B 63 963 963 HOH HOH . I 6 HOH B 64 964 964 HOH HOH . I 6 HOH B 65 965 965 HOH HOH . I 6 HOH B 66 966 966 HOH HOH . I 6 HOH B 67 967 967 HOH HOH . I 6 HOH B 68 968 968 HOH HOH . I 6 HOH B 69 969 969 HOH HOH . I 6 HOH B 70 970 970 HOH HOH . I 6 HOH B 71 971 971 HOH HOH . I 6 HOH B 72 972 972 HOH HOH . I 6 HOH B 73 973 973 HOH HOH . I 6 HOH B 74 974 974 HOH HOH . I 6 HOH B 75 975 975 HOH HOH . I 6 HOH B 76 976 976 HOH HOH . I 6 HOH B 77 977 977 HOH HOH . I 6 HOH B 78 978 978 HOH HOH . I 6 HOH B 79 979 979 HOH HOH . I 6 HOH B 80 980 980 HOH HOH . I 6 HOH B 81 981 981 HOH HOH . I 6 HOH B 82 982 982 HOH HOH . I 6 HOH B 83 983 983 HOH HOH . I 6 HOH B 84 984 984 HOH HOH . I 6 HOH B 85 985 985 HOH HOH . I 6 HOH B 86 986 986 HOH HOH . I 6 HOH B 87 987 987 HOH HOH . I 6 HOH B 88 988 988 HOH HOH . I 6 HOH B 89 989 989 HOH HOH . I 6 HOH B 90 990 990 HOH HOH . I 6 HOH B 91 991 991 HOH HOH . I 6 HOH B 92 992 992 HOH HOH . I 6 HOH B 93 993 994 HOH HOH . I 6 HOH B 94 994 993 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . B . G 5 -9.381 75.802 2.172 0.93 58.35 ? N1 PLP 803 B 1 HETATM 2 C C2 PLP . B . G 5 -8.22 76.035 2.779 0.93 59.03 ? C2 PLP 803 B 1 HETATM 3 C C2A PLP . B . G 5 -7.678 77.427 2.793 0.93 59.38 ? C2A PLP 803 B 1 HETATM 4 C C3 PLP . B . G 5 -7.518 74.994 3.4 0.93 63.08 ? C3 PLP 803 B 1 HETATM 5 O O3 PLP . B . G 5 -6.341 75.288 4 0.93 68.41 ? O3 PLP 803 B 1 HETATM 6 C C4 PLP . B . G 5 -8.041 73.689 3.369 0.93 63.72 ? C4 PLP 803 B 1 HETATM 7 C C4A PLP . B . G 5 -7.334 72.578 4.006 0.93 62.06 ? C4A PLP 803 B 1 HETATM 8 C C5 PLP . B . G 5 -9.27 73.476 2.726 0.93 57.84 ? C5 PLP 803 B 1 HETATM 9 C C6 PLP . B . G 5 -9.886 74.551 2.148 0.93 56.48 ? C6 PLP 803 B 1 HETATM 10 C C5A PLP . B . G 5 -9.898 72.113 2.641 0.93 53.56 ? C5A PLP 803 B 1 HETATM 11 O O4P PLP . B . G 5 -10.634 71.777 3.858 0.93 46.16 ? O4P PLP 803 B 1 HETATM 12 P P PLP . B . G 5 -11.43 70.379 3.97 0.93 38.56 ? P PLP 803 B 1 HETATM 13 O O1P PLP . B . G 5 -12.629 70.501 3.047 0.93 48.5 ? O1P PLP 803 B 1 HETATM 14 O O2P PLP . B . G 5 -11.821 70.246 5.429 0.93 42.37 ? O2P PLP 803 B 1 HETATM 15 O O3P PLP . B . G 5 -10.447 69.312 3.526 0.93 37.01 ? O3P PLP 803 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #