data_8FJU # _model_server_result.job_id SUrAm-uNGdpk_oKBrphClA _model_server_result.datetime_utc '2024-11-23 13:05:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8FJU # _exptl.entry_id 8FJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FJU _cell.length_a 157.338 _cell.length_b 157.338 _cell.length_c 207.552 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N2 O7 P' _chem_comp.formula_weight 306.209 _chem_comp.id PLG _chem_comp.mon_nstd_flag . _chem_comp.name N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLG doub 260 n y N1 C6 PLG sing 261 n y C2 C2A PLG sing 262 n n C2 C3 PLG sing 263 n y C2A H2A1 PLG sing 264 n n C2A H2A2 PLG sing 265 n n C2A H2A3 PLG sing 266 n n C3 O3 PLG sing 267 n n C3 C4 PLG doub 268 n y O3 HO3 PLG sing 269 n n C4 C4A PLG sing 270 n n C4 C5 PLG sing 271 n y C4A N PLG sing 272 n n C4A H4A1 PLG sing 273 n n C4A H4A2 PLG sing 274 n n C5 C6 PLG doub 275 n y C5 C5A PLG sing 276 n n C6 H6 PLG sing 277 n n C5A OP4 PLG sing 278 n n C5A H5A1 PLG sing 279 n n C5A H5A2 PLG sing 280 n n OP4 P PLG sing 281 n n P OP1 PLG doub 282 n n P OP2 PLG sing 283 n n P OP3 PLG sing 284 n n OP2 HOP2 PLG sing 285 n n OP3 HOP3 PLG sing 286 n n C O PLG doub 287 n n C OXT PLG sing 288 n n C CA PLG sing 289 n n OXT HXT PLG sing 290 n n CA N PLG sing 291 n n CA HA2 PLG sing 292 n n CA HA1 PLG sing 293 n n N H PLG sing 294 n n # _atom_sites.entry_id 8FJU _atom_sites.fract_transf_matrix[1][1] 0.006356 _atom_sites.fract_transf_matrix[1][2] 0.003669 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLG A 1 601 601 PLG PLG . D 3 Y79 A 1 602 701 Y79 G34 . E 2 PLG B 1 601 601 PLG PLG . F 3 Y79 B 1 602 701 Y79 G34 . G 4 HOH A 1 701 185 HOH HOH . G 4 HOH A 2 702 113 HOH HOH . G 4 HOH A 3 703 145 HOH HOH . G 4 HOH A 4 704 190 HOH HOH . G 4 HOH A 5 705 191 HOH HOH . G 4 HOH A 6 706 129 HOH HOH . G 4 HOH A 7 707 193 HOH HOH . G 4 HOH A 8 708 93 HOH HOH . G 4 HOH A 9 709 95 HOH HOH . G 4 HOH A 10 710 85 HOH HOH . G 4 HOH A 11 711 30 HOH HOH . G 4 HOH A 12 712 194 HOH HOH . G 4 HOH A 13 713 104 HOH HOH . G 4 HOH A 14 714 65 HOH HOH . G 4 HOH A 15 715 110 HOH HOH . G 4 HOH A 16 716 99 HOH HOH . G 4 HOH A 17 717 67 HOH HOH . G 4 HOH A 18 718 72 HOH HOH . G 4 HOH A 19 719 152 HOH HOH . G 4 HOH A 20 720 186 HOH HOH . G 4 HOH A 21 721 90 HOH HOH . G 4 HOH A 22 722 179 HOH HOH . G 4 HOH A 23 723 89 HOH HOH . G 4 HOH A 24 724 25 HOH HOH . G 4 HOH A 25 725 195 HOH HOH . G 4 HOH A 26 726 36 HOH HOH . G 4 HOH A 27 727 100 HOH HOH . G 4 HOH A 28 728 10 HOH HOH . G 4 HOH A 29 729 51 HOH HOH . G 4 HOH A 30 730 101 HOH HOH . G 4 HOH A 31 731 34 HOH HOH . G 4 HOH A 32 732 50 HOH HOH . G 4 HOH A 33 733 31 HOH HOH . G 4 HOH A 34 734 128 HOH HOH . G 4 HOH A 35 735 111 HOH HOH . G 4 HOH A 36 736 59 HOH HOH . G 4 HOH A 37 737 78 HOH HOH . G 4 HOH A 38 738 63 HOH HOH . G 4 HOH A 39 739 24 HOH HOH . G 4 HOH A 40 740 160 HOH HOH . G 4 HOH A 41 741 5 HOH HOH . G 4 HOH A 42 742 133 HOH HOH . G 4 HOH A 43 743 48 HOH HOH . G 4 HOH A 44 744 187 HOH HOH . G 4 HOH A 45 745 143 HOH HOH . G 4 HOH A 46 746 16 HOH HOH . G 4 HOH A 47 747 60 HOH HOH . G 4 HOH A 48 748 96 HOH HOH . G 4 HOH A 49 749 13 HOH HOH . G 4 HOH A 50 750 161 HOH HOH . G 4 HOH A 51 751 156 HOH HOH . G 4 HOH A 52 752 188 HOH HOH . G 4 HOH A 53 753 41 HOH HOH . G 4 HOH A 54 754 164 HOH HOH . G 4 HOH A 55 755 73 HOH HOH . G 4 HOH A 56 756 83 HOH HOH . G 4 HOH A 57 757 81 HOH HOH . G 4 HOH A 58 758 157 HOH HOH . G 4 HOH A 59 759 79 HOH HOH . G 4 HOH A 60 760 172 HOH HOH . G 4 HOH A 61 761 33 HOH HOH . G 4 HOH A 62 762 162 HOH HOH . G 4 HOH A 63 763 153 HOH HOH . G 4 HOH A 64 764 151 HOH HOH . G 4 HOH A 65 765 132 HOH HOH . G 4 HOH A 66 766 23 HOH HOH . G 4 HOH A 67 767 139 HOH HOH . G 4 HOH A 68 768 142 HOH HOH . G 4 HOH A 69 769 14 HOH HOH . H 4 HOH B 1 701 198 HOH HOH . H 4 HOH B 2 702 107 HOH HOH . H 4 HOH B 3 703 29 HOH HOH . H 4 HOH B 4 704 19 HOH HOH . H 4 HOH B 5 705 126 HOH HOH . H 4 HOH B 6 706 98 HOH HOH . H 4 HOH B 7 707 105 HOH HOH . H 4 HOH B 8 708 137 HOH HOH . H 4 HOH B 9 709 119 HOH HOH . H 4 HOH B 10 710 91 HOH HOH . H 4 HOH B 11 711 45 HOH HOH . H 4 HOH B 12 712 121 HOH HOH . H 4 HOH B 13 713 166 HOH HOH . H 4 HOH B 14 714 134 HOH HOH . H 4 HOH B 15 715 103 HOH HOH . H 4 HOH B 16 716 43 HOH HOH . H 4 HOH B 17 717 118 HOH HOH . H 4 HOH B 18 718 189 HOH HOH . H 4 HOH B 19 719 97 HOH HOH . H 4 HOH B 20 720 115 HOH HOH . H 4 HOH B 21 721 140 HOH HOH . H 4 HOH B 22 722 102 HOH HOH . H 4 HOH B 23 723 39 HOH HOH . H 4 HOH B 24 724 171 HOH HOH . H 4 HOH B 25 725 120 HOH HOH . H 4 HOH B 26 726 26 HOH HOH . H 4 HOH B 27 727 1 HOH HOH . H 4 HOH B 28 728 69 HOH HOH . H 4 HOH B 29 729 125 HOH HOH . H 4 HOH B 30 730 55 HOH HOH . H 4 HOH B 31 731 148 HOH HOH . H 4 HOH B 32 732 109 HOH HOH . H 4 HOH B 33 733 70 HOH HOH . H 4 HOH B 34 734 180 HOH HOH . H 4 HOH B 35 735 46 HOH HOH . H 4 HOH B 36 736 192 HOH HOH . H 4 HOH B 37 737 52 HOH HOH . H 4 HOH B 38 738 68 HOH HOH . H 4 HOH B 39 739 204 HOH HOH . H 4 HOH B 40 740 21 HOH HOH . H 4 HOH B 41 741 196 HOH HOH . H 4 HOH B 42 742 11 HOH HOH . H 4 HOH B 43 743 44 HOH HOH . H 4 HOH B 44 744 116 HOH HOH . H 4 HOH B 45 745 37 HOH HOH . H 4 HOH B 46 746 56 HOH HOH . H 4 HOH B 47 747 88 HOH HOH . H 4 HOH B 48 748 200 HOH HOH . H 4 HOH B 49 749 47 HOH HOH . H 4 HOH B 50 750 3 HOH HOH . H 4 HOH B 51 751 106 HOH HOH . H 4 HOH B 52 752 74 HOH HOH . H 4 HOH B 53 753 122 HOH HOH . H 4 HOH B 54 754 201 HOH HOH . H 4 HOH B 55 755 64 HOH HOH . H 4 HOH B 56 756 49 HOH HOH . H 4 HOH B 57 757 205 HOH HOH . H 4 HOH B 58 758 86 HOH HOH . H 4 HOH B 59 759 174 HOH HOH . H 4 HOH B 60 760 4 HOH HOH . H 4 HOH B 61 761 155 HOH HOH . H 4 HOH B 62 762 165 HOH HOH . H 4 HOH B 63 763 108 HOH HOH . H 4 HOH B 64 764 146 HOH HOH . H 4 HOH B 65 765 183 HOH HOH . H 4 HOH B 66 766 76 HOH HOH . H 4 HOH B 67 767 38 HOH HOH . H 4 HOH B 68 768 92 HOH HOH . H 4 HOH B 69 769 27 HOH HOH . H 4 HOH B 70 770 71 HOH HOH . H 4 HOH B 71 771 8 HOH HOH . H 4 HOH B 72 772 158 HOH HOH . H 4 HOH B 73 773 149 HOH HOH . H 4 HOH B 74 774 141 HOH HOH . H 4 HOH B 75 775 18 HOH HOH . H 4 HOH B 76 776 12 HOH HOH . H 4 HOH B 77 777 131 HOH HOH . H 4 HOH B 78 778 163 HOH HOH . H 4 HOH B 79 779 184 HOH HOH . H 4 HOH B 80 780 203 HOH HOH . H 4 HOH B 81 781 147 HOH HOH . H 4 HOH B 82 782 123 HOH HOH . H 4 HOH B 83 783 173 HOH HOH . H 4 HOH B 84 784 35 HOH HOH . H 4 HOH B 85 785 54 HOH HOH . H 4 HOH B 86 786 168 HOH HOH . H 4 HOH B 87 787 7 HOH HOH . H 4 HOH B 88 788 176 HOH HOH . H 4 HOH B 89 789 197 HOH HOH . H 4 HOH B 90 790 94 HOH HOH . H 4 HOH B 91 791 178 HOH HOH . H 4 HOH B 92 792 127 HOH HOH . H 4 HOH B 93 793 6 HOH HOH . H 4 HOH B 94 794 136 HOH HOH . H 4 HOH B 95 795 17 HOH HOH . H 4 HOH B 96 796 15 HOH HOH . H 4 HOH B 97 797 58 HOH HOH . H 4 HOH B 98 798 53 HOH HOH . H 4 HOH B 99 799 2 HOH HOH . H 4 HOH B 100 800 22 HOH HOH . H 4 HOH B 101 801 75 HOH HOH . H 4 HOH B 102 802 28 HOH HOH . H 4 HOH B 103 803 112 HOH HOH . H 4 HOH B 104 804 20 HOH HOH . H 4 HOH B 105 805 175 HOH HOH . H 4 HOH B 106 806 150 HOH HOH . H 4 HOH B 107 807 182 HOH HOH . H 4 HOH B 108 808 169 HOH HOH . H 4 HOH B 109 809 177 HOH HOH . H 4 HOH B 110 810 40 HOH HOH . H 4 HOH B 111 811 77 HOH HOH . H 4 HOH B 112 812 9 HOH HOH . H 4 HOH B 113 813 87 HOH HOH . H 4 HOH B 114 814 32 HOH HOH . H 4 HOH B 115 815 144 HOH HOH . H 4 HOH B 116 816 114 HOH HOH . H 4 HOH B 117 817 135 HOH HOH . H 4 HOH B 118 818 138 HOH HOH . H 4 HOH B 119 819 170 HOH HOH . H 4 HOH B 120 820 66 HOH HOH . H 4 HOH B 121 821 84 HOH HOH . H 4 HOH B 122 822 167 HOH HOH . H 4 HOH B 123 823 154 HOH HOH . H 4 HOH B 124 824 124 HOH HOH . H 4 HOH B 125 825 202 HOH HOH . H 4 HOH B 126 826 62 HOH HOH . H 4 HOH B 127 827 130 HOH HOH . H 4 HOH B 128 828 159 HOH HOH . H 4 HOH B 129 829 42 HOH HOH . H 4 HOH B 130 830 82 HOH HOH . H 4 HOH B 131 831 80 HOH HOH . H 4 HOH B 132 832 181 HOH HOH . H 4 HOH B 133 833 117 HOH HOH . H 4 HOH B 134 834 57 HOH HOH . H 4 HOH B 135 835 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLG . . . C 2 -8.828 74.593 2.399 1 36 ? N1 PLG 601 A 1 HETATM 2 C C2 PLG . . . C 2 -7.484 74.487 2.514 1 40.82 ? C2 PLG 601 A 1 HETATM 3 C C2A PLG . . . C 2 -6.632 75.725 2.489 1 44.23 ? C2A PLG 601 A 1 HETATM 4 C C3 PLG . . . C 2 -6.85 73.156 2.668 1 43.1 ? C3 PLG 601 A 1 HETATM 5 O O3 PLG . . . C 2 -5.503 73.013 2.789 1 48.27 ? O3 PLG 601 A 1 HETATM 6 C C4 PLG . . . C 2 -7.735 71.974 2.689 1 44.99 ? C4 PLG 601 A 1 HETATM 7 C C4A PLG . . . C 2 -7.184 70.573 2.838 1 51.53 ? C4A PLG 601 A 1 HETATM 8 C C5 PLG . . . C 2 -9.186 72.226 2.549 1 40.29 ? C5 PLG 601 A 1 HETATM 9 C C6 PLG . . . C 2 -9.65 73.532 2.411 1 39.46 ? C6 PLG 601 A 1 HETATM 10 C C5A PLG . . . C 2 -10.159 71.073 2.549 1 45.15 ? C5A PLG 601 A 1 HETATM 11 O OP4 PLG . . . C 2 -10.227 70.418 3.811 1 44.5 ? OP4 PLG 601 A 1 HETATM 12 P P PLG . . . C 2 -10.748 68.898 3.827 1 43.44 ? P PLG 601 A 1 HETATM 13 O OP1 PLG . . . C 2 -10.856 68.503 5.279 1 45.65 ? OP1 PLG 601 A 1 HETATM 14 O OP2 PLG . . . C 2 -12.09 68.957 3.132 1 46.63 ? OP2 PLG 601 A 1 HETATM 15 O OP3 PLG . . . C 2 -9.729 68.098 3.049 1 38.01 ? OP3 PLG 601 A 1 HETATM 16 C C PLG . . . C 2 -3.575 69.571 2.796 1 46.95 ? C PLG 601 A 1 HETATM 17 O O PLG . . . C 2 -3.212 70.769 2.835 1 44.92 ? O PLG 601 A 1 HETATM 18 O OXT PLG . . . C 2 -2.786 68.609 2.909 1 45.63 ? OXT PLG 601 A 1 HETATM 19 C CA PLG . . . C 2 -5.045 69.29 2.605 1 40.95 ? CA PLG 601 A 1 HETATM 20 N N PLG . . . C 2 -5.77 70.542 2.522 1 45.31 ? N PLG 601 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #