data_8FJU # _model_server_result.job_id Grg4t1D11Uo9WkAdp3WsLg _model_server_result.datetime_utc '2024-11-23 13:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8FJU # _exptl.entry_id 8FJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.454 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FJU _cell.length_a 157.338 _cell.length_b 157.338 _cell.length_c 207.552 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C22 H24 F N5 O6' _chem_comp.formula_weight 473.454 _chem_comp.id Y79 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C23 Y79 doub 411 n n O24 C23 Y79 sing 412 n n C23 C22 Y79 sing 413 n n C22 C21 Y79 sing 414 n n C21 C20 Y79 sing 415 n n N19 C20 Y79 sing 416 n n N19 C17 Y79 sing 417 n n C20 C26 Y79 sing 418 n n O27 C26 Y79 doub 419 n n C26 O28 Y79 sing 420 n n O18 C17 Y79 doub 421 n n C17 C12 Y79 sing 422 n n C12 C14 Y79 doub 423 n y C12 C13 Y79 sing 424 n y F34 C13 Y79 sing 425 n n C14 C16 Y79 sing 426 n y C13 C15 Y79 doub 427 n y C16 C33 Y79 doub 428 n y C15 C33 Y79 sing 429 n y C33 C32 Y79 sing 430 n n C32 C31 Y79 sing 431 n n C31 C30 Y79 sing 432 n n O10 C4 Y79 doub 433 n n N3 C4 Y79 sing 434 n n N3 C2 Y79 sing 435 n n N11 C2 Y79 sing 436 n n C4 C8 Y79 sing 437 n n C2 N1 Y79 doub 438 n n C30 C29 Y79 sing 439 n n C8 C9 Y79 doub 440 n y C8 N7 Y79 sing 441 n y N1 C9 Y79 sing 442 n n C29 N7 Y79 sing 443 n n C9 C5 Y79 sing 444 n y N7 C6 Y79 sing 445 n y C5 C6 Y79 doub 446 n y C5 H1 Y79 sing 447 n n C6 H2 Y79 sing 448 n n C14 H3 Y79 sing 449 n n C15 H4 Y79 sing 450 n n C16 H5 Y79 sing 451 n n C20 H6 Y79 sing 452 n n C21 H7 Y79 sing 453 n n C21 H8 Y79 sing 454 n n C22 H9 Y79 sing 455 n n C22 H10 Y79 sing 456 n n C29 H11 Y79 sing 457 n n C29 H12 Y79 sing 458 n n C30 H13 Y79 sing 459 n n C30 H14 Y79 sing 460 n n C31 H15 Y79 sing 461 n n C31 H16 Y79 sing 462 n n C32 H17 Y79 sing 463 n n C32 H18 Y79 sing 464 n n N11 H19 Y79 sing 465 n n N11 H20 Y79 sing 466 n n N19 H21 Y79 sing 467 n n N3 H22 Y79 sing 468 n n O24 H23 Y79 sing 469 n n O28 H24 Y79 sing 470 n n # _atom_sites.entry_id 8FJU _atom_sites.fract_transf_matrix[1][1] 0.006356 _atom_sites.fract_transf_matrix[1][2] 0.003669 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLG A 1 601 601 PLG PLG . D 3 Y79 A 1 602 701 Y79 G34 . E 2 PLG B 1 601 601 PLG PLG . F 3 Y79 B 1 602 701 Y79 G34 . G 4 HOH A 1 701 185 HOH HOH . G 4 HOH A 2 702 113 HOH HOH . G 4 HOH A 3 703 145 HOH HOH . G 4 HOH A 4 704 190 HOH HOH . G 4 HOH A 5 705 191 HOH HOH . G 4 HOH A 6 706 129 HOH HOH . G 4 HOH A 7 707 193 HOH HOH . G 4 HOH A 8 708 93 HOH HOH . G 4 HOH A 9 709 95 HOH HOH . G 4 HOH A 10 710 85 HOH HOH . G 4 HOH A 11 711 30 HOH HOH . G 4 HOH A 12 712 194 HOH HOH . G 4 HOH A 13 713 104 HOH HOH . G 4 HOH A 14 714 65 HOH HOH . G 4 HOH A 15 715 110 HOH HOH . G 4 HOH A 16 716 99 HOH HOH . G 4 HOH A 17 717 67 HOH HOH . G 4 HOH A 18 718 72 HOH HOH . G 4 HOH A 19 719 152 HOH HOH . G 4 HOH A 20 720 186 HOH HOH . G 4 HOH A 21 721 90 HOH HOH . G 4 HOH A 22 722 179 HOH HOH . G 4 HOH A 23 723 89 HOH HOH . G 4 HOH A 24 724 25 HOH HOH . G 4 HOH A 25 725 195 HOH HOH . G 4 HOH A 26 726 36 HOH HOH . G 4 HOH A 27 727 100 HOH HOH . G 4 HOH A 28 728 10 HOH HOH . G 4 HOH A 29 729 51 HOH HOH . G 4 HOH A 30 730 101 HOH HOH . G 4 HOH A 31 731 34 HOH HOH . G 4 HOH A 32 732 50 HOH HOH . G 4 HOH A 33 733 31 HOH HOH . G 4 HOH A 34 734 128 HOH HOH . G 4 HOH A 35 735 111 HOH HOH . G 4 HOH A 36 736 59 HOH HOH . G 4 HOH A 37 737 78 HOH HOH . G 4 HOH A 38 738 63 HOH HOH . G 4 HOH A 39 739 24 HOH HOH . G 4 HOH A 40 740 160 HOH HOH . G 4 HOH A 41 741 5 HOH HOH . G 4 HOH A 42 742 133 HOH HOH . G 4 HOH A 43 743 48 HOH HOH . G 4 HOH A 44 744 187 HOH HOH . G 4 HOH A 45 745 143 HOH HOH . G 4 HOH A 46 746 16 HOH HOH . G 4 HOH A 47 747 60 HOH HOH . G 4 HOH A 48 748 96 HOH HOH . G 4 HOH A 49 749 13 HOH HOH . G 4 HOH A 50 750 161 HOH HOH . G 4 HOH A 51 751 156 HOH HOH . G 4 HOH A 52 752 188 HOH HOH . G 4 HOH A 53 753 41 HOH HOH . G 4 HOH A 54 754 164 HOH HOH . G 4 HOH A 55 755 73 HOH HOH . G 4 HOH A 56 756 83 HOH HOH . G 4 HOH A 57 757 81 HOH HOH . G 4 HOH A 58 758 157 HOH HOH . G 4 HOH A 59 759 79 HOH HOH . G 4 HOH A 60 760 172 HOH HOH . G 4 HOH A 61 761 33 HOH HOH . G 4 HOH A 62 762 162 HOH HOH . G 4 HOH A 63 763 153 HOH HOH . G 4 HOH A 64 764 151 HOH HOH . G 4 HOH A 65 765 132 HOH HOH . G 4 HOH A 66 766 23 HOH HOH . G 4 HOH A 67 767 139 HOH HOH . G 4 HOH A 68 768 142 HOH HOH . G 4 HOH A 69 769 14 HOH HOH . H 4 HOH B 1 701 198 HOH HOH . H 4 HOH B 2 702 107 HOH HOH . H 4 HOH B 3 703 29 HOH HOH . H 4 HOH B 4 704 19 HOH HOH . H 4 HOH B 5 705 126 HOH HOH . H 4 HOH B 6 706 98 HOH HOH . H 4 HOH B 7 707 105 HOH HOH . H 4 HOH B 8 708 137 HOH HOH . H 4 HOH B 9 709 119 HOH HOH . H 4 HOH B 10 710 91 HOH HOH . H 4 HOH B 11 711 45 HOH HOH . H 4 HOH B 12 712 121 HOH HOH . H 4 HOH B 13 713 166 HOH HOH . H 4 HOH B 14 714 134 HOH HOH . H 4 HOH B 15 715 103 HOH HOH . H 4 HOH B 16 716 43 HOH HOH . H 4 HOH B 17 717 118 HOH HOH . H 4 HOH B 18 718 189 HOH HOH . H 4 HOH B 19 719 97 HOH HOH . H 4 HOH B 20 720 115 HOH HOH . H 4 HOH B 21 721 140 HOH HOH . H 4 HOH B 22 722 102 HOH HOH . H 4 HOH B 23 723 39 HOH HOH . H 4 HOH B 24 724 171 HOH HOH . H 4 HOH B 25 725 120 HOH HOH . H 4 HOH B 26 726 26 HOH HOH . H 4 HOH B 27 727 1 HOH HOH . H 4 HOH B 28 728 69 HOH HOH . H 4 HOH B 29 729 125 HOH HOH . H 4 HOH B 30 730 55 HOH HOH . H 4 HOH B 31 731 148 HOH HOH . H 4 HOH B 32 732 109 HOH HOH . H 4 HOH B 33 733 70 HOH HOH . H 4 HOH B 34 734 180 HOH HOH . H 4 HOH B 35 735 46 HOH HOH . H 4 HOH B 36 736 192 HOH HOH . H 4 HOH B 37 737 52 HOH HOH . H 4 HOH B 38 738 68 HOH HOH . H 4 HOH B 39 739 204 HOH HOH . H 4 HOH B 40 740 21 HOH HOH . H 4 HOH B 41 741 196 HOH HOH . H 4 HOH B 42 742 11 HOH HOH . H 4 HOH B 43 743 44 HOH HOH . H 4 HOH B 44 744 116 HOH HOH . H 4 HOH B 45 745 37 HOH HOH . H 4 HOH B 46 746 56 HOH HOH . H 4 HOH B 47 747 88 HOH HOH . H 4 HOH B 48 748 200 HOH HOH . H 4 HOH B 49 749 47 HOH HOH . H 4 HOH B 50 750 3 HOH HOH . H 4 HOH B 51 751 106 HOH HOH . H 4 HOH B 52 752 74 HOH HOH . H 4 HOH B 53 753 122 HOH HOH . H 4 HOH B 54 754 201 HOH HOH . H 4 HOH B 55 755 64 HOH HOH . H 4 HOH B 56 756 49 HOH HOH . H 4 HOH B 57 757 205 HOH HOH . H 4 HOH B 58 758 86 HOH HOH . H 4 HOH B 59 759 174 HOH HOH . H 4 HOH B 60 760 4 HOH HOH . H 4 HOH B 61 761 155 HOH HOH . H 4 HOH B 62 762 165 HOH HOH . H 4 HOH B 63 763 108 HOH HOH . H 4 HOH B 64 764 146 HOH HOH . H 4 HOH B 65 765 183 HOH HOH . H 4 HOH B 66 766 76 HOH HOH . H 4 HOH B 67 767 38 HOH HOH . H 4 HOH B 68 768 92 HOH HOH . H 4 HOH B 69 769 27 HOH HOH . H 4 HOH B 70 770 71 HOH HOH . H 4 HOH B 71 771 8 HOH HOH . H 4 HOH B 72 772 158 HOH HOH . H 4 HOH B 73 773 149 HOH HOH . H 4 HOH B 74 774 141 HOH HOH . H 4 HOH B 75 775 18 HOH HOH . H 4 HOH B 76 776 12 HOH HOH . H 4 HOH B 77 777 131 HOH HOH . H 4 HOH B 78 778 163 HOH HOH . H 4 HOH B 79 779 184 HOH HOH . H 4 HOH B 80 780 203 HOH HOH . H 4 HOH B 81 781 147 HOH HOH . H 4 HOH B 82 782 123 HOH HOH . H 4 HOH B 83 783 173 HOH HOH . H 4 HOH B 84 784 35 HOH HOH . H 4 HOH B 85 785 54 HOH HOH . H 4 HOH B 86 786 168 HOH HOH . H 4 HOH B 87 787 7 HOH HOH . H 4 HOH B 88 788 176 HOH HOH . H 4 HOH B 89 789 197 HOH HOH . H 4 HOH B 90 790 94 HOH HOH . H 4 HOH B 91 791 178 HOH HOH . H 4 HOH B 92 792 127 HOH HOH . H 4 HOH B 93 793 6 HOH HOH . H 4 HOH B 94 794 136 HOH HOH . H 4 HOH B 95 795 17 HOH HOH . H 4 HOH B 96 796 15 HOH HOH . H 4 HOH B 97 797 58 HOH HOH . H 4 HOH B 98 798 53 HOH HOH . H 4 HOH B 99 799 2 HOH HOH . H 4 HOH B 100 800 22 HOH HOH . H 4 HOH B 101 801 75 HOH HOH . H 4 HOH B 102 802 28 HOH HOH . H 4 HOH B 103 803 112 HOH HOH . H 4 HOH B 104 804 20 HOH HOH . H 4 HOH B 105 805 175 HOH HOH . H 4 HOH B 106 806 150 HOH HOH . H 4 HOH B 107 807 182 HOH HOH . H 4 HOH B 108 808 169 HOH HOH . H 4 HOH B 109 809 177 HOH HOH . H 4 HOH B 110 810 40 HOH HOH . H 4 HOH B 111 811 77 HOH HOH . H 4 HOH B 112 812 9 HOH HOH . H 4 HOH B 113 813 87 HOH HOH . H 4 HOH B 114 814 32 HOH HOH . H 4 HOH B 115 815 144 HOH HOH . H 4 HOH B 116 816 114 HOH HOH . H 4 HOH B 117 817 135 HOH HOH . H 4 HOH B 118 818 138 HOH HOH . H 4 HOH B 119 819 170 HOH HOH . H 4 HOH B 120 820 66 HOH HOH . H 4 HOH B 121 821 84 HOH HOH . H 4 HOH B 122 822 167 HOH HOH . H 4 HOH B 123 823 154 HOH HOH . H 4 HOH B 124 824 124 HOH HOH . H 4 HOH B 125 825 202 HOH HOH . H 4 HOH B 126 826 62 HOH HOH . H 4 HOH B 127 827 130 HOH HOH . H 4 HOH B 128 828 159 HOH HOH . H 4 HOH B 129 829 42 HOH HOH . H 4 HOH B 130 830 82 HOH HOH . H 4 HOH B 131 831 80 HOH HOH . H 4 HOH B 132 832 181 HOH HOH . H 4 HOH B 133 833 117 HOH HOH . H 4 HOH B 134 834 57 HOH HOH . H 4 HOH B 135 835 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 Y79 . . . D 3 -3.064 69.962 -1.74 0.91 58.02 ? C8 Y79 602 A 1 HETATM 2 C C5 Y79 . . . D 3 -1.379 68.935 -0.679 0.91 53.62 ? C5 Y79 602 A 1 HETATM 3 C C6 Y79 . . . D 3 -2.514 68.131 -0.671 0.91 55.37 ? C6 Y79 602 A 1 HETATM 4 N N1 Y79 . . . D 3 -1.096 71.263 -1.718 0.91 61.12 ? N1 Y79 602 A 1 HETATM 5 C C2 Y79 . . . D 3 -1.718 72.224 -2.393 0.91 56.37 ? C2 Y79 602 A 1 HETATM 6 C C4 Y79 . . . D 3 -3.691 71.021 -2.465 0.91 55.53 ? C4 Y79 602 A 1 HETATM 7 C C9 Y79 . . . D 3 -1.747 70.12 -1.377 0.91 56.73 ? C9 Y79 602 A 1 HETATM 8 C C12 Y79 . . . D 3 -4.912 66.406 -8.756 0.91 66.62 ? C12 Y79 602 A 1 HETATM 9 C C13 Y79 . . . D 3 -3.844 66.92 -8.037 0.91 71.62 ? C13 Y79 602 A 1 HETATM 10 C C14 Y79 . . . D 3 -5.889 65.677 -8.092 0.91 64.01 ? C14 Y79 602 A 1 HETATM 11 C C15 Y79 . . . D 3 -3.73 66.692 -6.677 0.91 68.94 ? C15 Y79 602 A 1 HETATM 12 C C16 Y79 . . . D 3 -5.775 65.445 -6.724 0.91 60.31 ? C16 Y79 602 A 1 HETATM 13 C C17 Y79 . . . D 3 -4.956 66.725 -10.262 0.91 72.95 ? C17 Y79 602 A 1 HETATM 14 C C20 Y79 . . . D 3 -5.959 64.503 -11.248 0.91 74.75 ? C20 Y79 602 A 1 HETATM 15 C C21 Y79 . . . D 3 -6.201 64.017 -12.68 0.91 71.01 ? C21 Y79 602 A 1 HETATM 16 C C22 Y79 . . . D 3 -5.778 65.076 -13.701 0.91 67.81 ? C22 Y79 602 A 1 HETATM 17 C C23 Y79 . . . D 3 -5.727 64.57 -15.141 0.91 80.36 ? C23 Y79 602 A 1 HETATM 18 C C26 Y79 . . . D 3 -4.967 63.573 -10.558 0.91 82.19 ? C26 Y79 602 A 1 HETATM 19 C C29 Y79 . . . D 3 -4.843 68.215 -1.491 0.91 53.44 ? C29 Y79 602 A 1 HETATM 20 C C30 Y79 . . . D 3 -4.789 66.88 -2.241 0.91 54.04 ? C30 Y79 602 A 1 HETATM 21 C C31 Y79 . . . D 3 -4.506 67.048 -3.737 0.91 52.06 ? C31 Y79 602 A 1 HETATM 22 C C32 Y79 . . . D 3 -4.55 65.724 -4.51 0.91 61.46 ? C32 Y79 602 A 1 HETATM 23 C C33 Y79 . . . D 3 -4.697 65.956 -6.016 0.91 65.74 ? C33 Y79 602 A 1 HETATM 24 F F34 Y79 . . . D 3 -2.883 67.645 -8.679 0.91 77.91 ? F34 Y79 602 A 1 HETATM 25 N N11 Y79 . . . D 3 -1.011 73.439 -2.748 0.91 49.23 ? N11 Y79 602 A 1 HETATM 26 N N19 Y79 . . . D 3 -5.422 65.852 -11.341 0.91 73.61 ? N19 Y79 602 A 1 HETATM 27 N N3 Y79 . . . D 3 -2.988 72.106 -2.76 0.91 53.27 ? N3 Y79 602 A 1 HETATM 28 N N7 Y79 . . . D 3 -3.502 68.753 -1.296 0.91 57.34 ? N7 Y79 602 A 1 HETATM 29 O O10 Y79 . . . D 3 -5.028 70.947 -2.869 0.91 46.34 ? O10 Y79 602 A 1 HETATM 30 O O18 Y79 . . . D 3 -4.554 67.791 -10.588 0.91 75.67 ? O18 Y79 602 A 1 HETATM 31 O O24 Y79 . . . D 3 -6.742 64.032 -15.659 0.91 82.1 ? O24 Y79 602 A 1 HETATM 32 O O25 Y79 . . . D 3 -4.672 64.702 -15.815 0.91 76.99 ? O25 Y79 602 A 1 HETATM 33 O O27 Y79 . . . D 3 -3.827 63.383 -11.061 0.91 90.15 ? O27 Y79 602 A 1 HETATM 34 O O28 Y79 . . . D 3 -5.289 62.991 -9.489 0.91 83.67 ? O28 Y79 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #