data_8FJV
#
_model_server_result.job_id            '_WvdWhmLhZKa6WzlPJGa2A' 
_model_server_result.datetime_utc      '2024-11-27 09:00:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fjv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    8FJV 
#
_exptl.entry_id    8FJV 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              284.16 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYCINAMIDE RIBONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8FJV 
_cell.length_a            74.943 
_cell.length_b            74.943 
_cell.length_c            101.015 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FJV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H13 N2 O8 P -2' 
_chem_comp.formula_weight    284.16 
_chem_comp.id                GAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYCINAMIDE RIBONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O6 GAR sing 83 n n 
C1 C2 GAR sing 84 n n 
C1 C5 GAR sing 85 n n 
C1 H1 GAR sing 86 n n 
O6 HO6 GAR sing 87 n n 
C2 O8 GAR sing 88 n n 
C2 C3 GAR sing 89 n n 
C2 H2 GAR sing 90 n n 
O8 HO8 GAR sing 91 n n 
C3 O4 GAR sing 92 n n 
C3 N19 GAR sing 93 n n 
C3 H3 GAR sing 94 n n 
O4 C5 GAR sing 95 n n 
C5 C10 GAR sing 96 n n 
C5 H5 GAR sing 97 n n 
C10 O12 GAR sing 98 n n 
C10 H101 GAR sing 99 n n 
C10 H102 GAR sing 100 n n 
O12 P15 GAR sing 101 n n 
N19 C21 GAR sing 102 n n 
N19 H19 GAR sing 103 n n 
C21 O22 GAR doub 104 n n 
C21 C23 GAR sing 105 n n 
C23 N24 GAR sing 106 n n 
C23 H231 GAR sing 107 n n 
C23 H232 GAR sing 108 n n 
N24 H241 GAR sing 109 n n 
N24 H242 GAR sing 110 n n 
P15 O16 GAR doub 111 n n 
P15 O17 GAR sing 112 n n 
P15 O18 GAR sing 113 n n 
#
_atom_sites.entry_id                     8FJV 
_atom_sites.fract_transf_matrix[1][1]    0.013343 
_atom_sites.fract_transf_matrix[1][2]    0.007704 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015408 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0099 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GAR A 1 1101 1101 GAR GAR . 
C 3 Y72 A 1 1102 1201 Y72 G62 . 
D 4 HOH A 1 1201 34 HOH HOH . 
D 4 HOH A 2 1202 16 HOH HOH . 
D 4 HOH A 3 1203 10 HOH HOH . 
D 4 HOH A 4 1204 9 HOH HOH . 
D 4 HOH A 5 1205 7 HOH HOH . 
D 4 HOH A 6 1206 40 HOH HOH . 
D 4 HOH A 7 1207 19 HOH HOH . 
D 4 HOH A 8 1208 27 HOH HOH . 
D 4 HOH A 9 1209 39 HOH HOH . 
D 4 HOH A 10 1210 36 HOH HOH . 
D 4 HOH A 11 1211 4 HOH HOH . 
D 4 HOH A 12 1212 5 HOH HOH . 
D 4 HOH A 13 1213 17 HOH HOH . 
D 4 HOH A 14 1214 26 HOH HOH . 
D 4 HOH A 15 1215 2 HOH HOH . 
D 4 HOH A 16 1216 8 HOH HOH . 
D 4 HOH A 17 1217 33 HOH HOH . 
D 4 HOH A 18 1218 37 HOH HOH . 
D 4 HOH A 19 1219 24 HOH HOH . 
D 4 HOH A 20 1220 6 HOH HOH . 
D 4 HOH A 21 1221 22 HOH HOH . 
D 4 HOH A 22 1222 3 HOH HOH . 
D 4 HOH A 23 1223 1 HOH HOH . 
D 4 HOH A 24 1224 23 HOH HOH . 
D 4 HOH A 25 1225 14 HOH HOH . 
D 4 HOH A 26 1226 30 HOH HOH . 
D 4 HOH A 27 1227 11 HOH HOH . 
D 4 HOH A 28 1228 18 HOH HOH . 
D 4 HOH A 29 1229 15 HOH HOH . 
D 4 HOH A 30 1230 38 HOH HOH . 
D 4 HOH A 31 1231 13 HOH HOH . 
D 4 HOH A 32 1232 21 HOH HOH . 
D 4 HOH A 33 1233 32 HOH HOH . 
D 4 HOH A 34 1234 31 HOH HOH . 
D 4 HOH A 35 1235 20 HOH HOH . 
D 4 HOH A 36 1236 35 HOH HOH . 
D 4 HOH A 37 1237 25 HOH HOH . 
D 4 HOH A 38 1238 12 HOH HOH . 
D 4 HOH A 39 1239 29 HOH HOH . 
D 4 HOH A 40 1240 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAR . . . B 2 31.493 -21.141 -14.766 1 86.47 ? C1 GAR 1101 A 1 
HETATM 2 O O6 GAR . . . B 2 31.192 -21.875 -13.574 1 90.93 ? O6 GAR 1101 A 1 
HETATM 3 C C2 GAR . . . B 2 30.182 -20.728 -15.46 1 94.28 ? C2 GAR 1101 A 1 
HETATM 4 O O8 GAR . . . B 2 29.126 -21.652 -15.184 1 101.6 ? O8 GAR 1101 A 1 
HETATM 5 C C3 GAR . . . B 2 29.994 -19.302 -14.921 1 106.24 ? C3 GAR 1101 A 1 
HETATM 6 O O4 GAR . . . B 2 31.343 -18.823 -14.614 1 93.07 ? O4 GAR 1101 A 1 
HETATM 7 C C5 GAR . . . B 2 32.3 -19.886 -14.393 1 82.1 ? C5 GAR 1101 A 1 
HETATM 8 C C10 GAR . . . B 2 33.667 -19.776 -15.081 1 76.41 ? C10 GAR 1101 A 1 
HETATM 9 O O12 GAR . . . B 2 34.64 -20.547 -14.34 1 59.5 ? O12 GAR 1101 A 1 
HETATM 10 N N19 GAR . . . B 2 29.204 -18.379 -15.717 1 125.84 ? N19 GAR 1101 A 1 
HETATM 11 C C21 GAR . . . B 2 28.396 -17.538 -15.049 1 133.8 ? C21 GAR 1101 A 1 
HETATM 12 O O22 GAR . . . B 2 28.337 -17.461 -13.823 1 135.51 ? O22 GAR 1101 A 1 
HETATM 13 C C23 GAR . . . B 2 27.562 -16.631 -15.908 1 135.87 ? C23 GAR 1101 A 1 
HETATM 14 N N24 GAR . . . B 2 26.347 -16.222 -15.24 1 138.94 ? N24 GAR 1101 A 1 
HETATM 15 P P15 GAR . . . B 2 36.212 -20.592 -14.725 1 59.13 ? P15 GAR 1101 A 1 
HETATM 16 O O16 GAR . . . B 2 36.234 -21.102 -16.164 1 57.51 ? O16 GAR 1101 A 1 
HETATM 17 O O17 GAR . . . B 2 36.648 -19.155 -14.557 1 70.25 ? O17 GAR 1101 A 1 
HETATM 18 O O18 GAR . . . B 2 36.881 -21.498 -13.712 1 46.1 ? O18 GAR 1101 A 1 
HETATM 19 H H1 GAR . . . B 2 32.082 -21.771 -15.448 1 103.76 ? H1 GAR 1101 A 1 
HETATM 20 H HO6 GAR . . . B 2 30.856 -22.75 -13.811 1 109.11 ? HO6 GAR 1101 A 1 
HETATM 21 H H2 GAR . . . B 2 30.187 -20.747 -16.559 1 113.13 ? H2 GAR 1101 A 1 
HETATM 22 H HO8 GAR . . . B 2 28.446 -21.578 -15.868 1 121.92 ? HO8 GAR 1101 A 1 
HETATM 23 H H3 GAR . . . B 2 29.345 -19.352 -14.036 1 127.49 ? H3 GAR 1101 A 1 
HETATM 24 H H5 GAR . . . B 2 32.658 -19.87 -13.355 1 98.52 ? H5 GAR 1101 A 1 
HETATM 25 H H101 GAR . . . B 2 33.599 -20.15 -16.105 1 91.69 ? H101 GAR 1101 A 1 
HETATM 26 H H102 GAR . . . B 2 33.977 -18.73 -15.126 1 91.69 ? H102 GAR 1101 A 1 
HETATM 27 H H19 GAR . . . B 2 29.268 -18.378 -16.725 1 151.01 ? H19 GAR 1101 A 1 
HETATM 28 H H231 GAR . . . B 2 27.306 -17.148 -16.835 1 163.05 ? H231 GAR 1101 A 1 
HETATM 29 H H232 GAR . . . B 2 28.145 -15.745 -16.168 1 163.05 ? H232 GAR 1101 A 1 
HETATM 30 H H241 GAR . . . B 2 26.15 -16.549 -14.305 1 166.73 ? H241 GAR 1101 A 1 
HETATM 31 H H242 GAR . . . B 2 25.694 -15.609 -15.709 1 166.73 ? H242 GAR 1101 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#