data_8FJW # _model_server_result.job_id OWTbsJSFX2rzjPRfxyCSdg _model_server_result.datetime_utc '2024-11-27 08:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fjw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8FJW # _exptl.entry_id 8FJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCINAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FJW _cell.length_a 74.368 _cell.length_b 74.368 _cell.length_c 100.336 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H13 N2 O8 P -2' _chem_comp.formula_weight 284.16 _chem_comp.id GAR _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCINAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 GAR sing 83 n n C1 C2 GAR sing 84 n n C1 C5 GAR sing 85 n n C1 H1 GAR sing 86 n n O6 HO6 GAR sing 87 n n C2 O8 GAR sing 88 n n C2 C3 GAR sing 89 n n C2 H2 GAR sing 90 n n O8 HO8 GAR sing 91 n n C3 O4 GAR sing 92 n n C3 N19 GAR sing 93 n n C3 H3 GAR sing 94 n n O4 C5 GAR sing 95 n n C5 C10 GAR sing 96 n n C5 H5 GAR sing 97 n n C10 O12 GAR sing 98 n n C10 H101 GAR sing 99 n n C10 H102 GAR sing 100 n n O12 P15 GAR sing 101 n n N19 C21 GAR sing 102 n n N19 H19 GAR sing 103 n n C21 O22 GAR doub 104 n n C21 C23 GAR sing 105 n n C23 N24 GAR sing 106 n n C23 H231 GAR sing 107 n n C23 H232 GAR sing 108 n n N24 H241 GAR sing 109 n n N24 H242 GAR sing 110 n n P15 O16 GAR doub 111 n n P15 O17 GAR sing 112 n n P15 O18 GAR sing 113 n n # _atom_sites.entry_id 8FJW _atom_sites.fract_transf_matrix[1][1] 0.013447 _atom_sites.fract_transf_matrix[1][2] 0.007763 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1101 GAR GAR . C 3 Y79 A 1 1102 1201 Y79 G34 . D 4 HOH A 1 1201 34 HOH HOH . D 4 HOH A 2 1202 17 HOH HOH . D 4 HOH A 3 1203 27 HOH HOH . D 4 HOH A 4 1204 60 HOH HOH . D 4 HOH A 5 1205 41 HOH HOH . D 4 HOH A 6 1206 18 HOH HOH . D 4 HOH A 7 1207 33 HOH HOH . D 4 HOH A 8 1208 32 HOH HOH . D 4 HOH A 9 1209 83 HOH HOH . D 4 HOH A 10 1210 66 HOH HOH . D 4 HOH A 11 1211 6 HOH HOH . D 4 HOH A 12 1212 79 HOH HOH . D 4 HOH A 13 1213 22 HOH HOH . D 4 HOH A 14 1214 52 HOH HOH . D 4 HOH A 15 1215 45 HOH HOH . D 4 HOH A 16 1216 84 HOH HOH . D 4 HOH A 17 1217 26 HOH HOH . D 4 HOH A 18 1218 71 HOH HOH . D 4 HOH A 19 1219 59 HOH HOH . D 4 HOH A 20 1220 43 HOH HOH . D 4 HOH A 21 1221 37 HOH HOH . D 4 HOH A 22 1222 38 HOH HOH . D 4 HOH A 23 1223 40 HOH HOH . D 4 HOH A 24 1224 36 HOH HOH . D 4 HOH A 25 1225 35 HOH HOH . D 4 HOH A 26 1226 61 HOH HOH . D 4 HOH A 27 1227 47 HOH HOH . D 4 HOH A 28 1228 68 HOH HOH . D 4 HOH A 29 1229 14 HOH HOH . D 4 HOH A 30 1230 24 HOH HOH . D 4 HOH A 31 1231 5 HOH HOH . D 4 HOH A 32 1232 63 HOH HOH . D 4 HOH A 33 1233 51 HOH HOH . D 4 HOH A 34 1234 4 HOH HOH . D 4 HOH A 35 1235 29 HOH HOH . D 4 HOH A 36 1236 19 HOH HOH . D 4 HOH A 37 1237 7 HOH HOH . D 4 HOH A 38 1238 11 HOH HOH . D 4 HOH A 39 1239 16 HOH HOH . D 4 HOH A 40 1240 10 HOH HOH . D 4 HOH A 41 1241 70 HOH HOH . D 4 HOH A 42 1242 13 HOH HOH . D 4 HOH A 43 1243 62 HOH HOH . D 4 HOH A 44 1244 15 HOH HOH . D 4 HOH A 45 1245 64 HOH HOH . D 4 HOH A 46 1246 67 HOH HOH . D 4 HOH A 47 1247 88 HOH HOH . D 4 HOH A 48 1248 30 HOH HOH . D 4 HOH A 49 1249 90 HOH HOH . D 4 HOH A 50 1250 85 HOH HOH . D 4 HOH A 51 1251 9 HOH HOH . D 4 HOH A 52 1252 56 HOH HOH . D 4 HOH A 53 1253 28 HOH HOH . D 4 HOH A 54 1254 87 HOH HOH . D 4 HOH A 55 1255 53 HOH HOH . D 4 HOH A 56 1256 54 HOH HOH . D 4 HOH A 57 1257 65 HOH HOH . D 4 HOH A 58 1258 20 HOH HOH . D 4 HOH A 59 1259 8 HOH HOH . D 4 HOH A 60 1260 21 HOH HOH . D 4 HOH A 61 1261 44 HOH HOH . D 4 HOH A 62 1262 89 HOH HOH . D 4 HOH A 63 1263 48 HOH HOH . D 4 HOH A 64 1264 12 HOH HOH . D 4 HOH A 65 1265 91 HOH HOH . D 4 HOH A 66 1266 2 HOH HOH . D 4 HOH A 67 1267 31 HOH HOH . D 4 HOH A 68 1268 3 HOH HOH . D 4 HOH A 69 1269 42 HOH HOH . D 4 HOH A 70 1270 46 HOH HOH . D 4 HOH A 71 1271 1 HOH HOH . D 4 HOH A 72 1272 49 HOH HOH . D 4 HOH A 73 1273 58 HOH HOH . D 4 HOH A 74 1274 72 HOH HOH . D 4 HOH A 75 1275 57 HOH HOH . D 4 HOH A 76 1276 55 HOH HOH . D 4 HOH A 77 1277 50 HOH HOH . D 4 HOH A 78 1278 74 HOH HOH . D 4 HOH A 79 1279 25 HOH HOH . D 4 HOH A 80 1280 82 HOH HOH . D 4 HOH A 81 1281 75 HOH HOH . D 4 HOH A 82 1282 78 HOH HOH . D 4 HOH A 83 1283 23 HOH HOH . D 4 HOH A 84 1284 81 HOH HOH . D 4 HOH A 85 1285 86 HOH HOH . D 4 HOH A 86 1286 77 HOH HOH . D 4 HOH A 87 1287 80 HOH HOH . D 4 HOH A 88 1288 73 HOH HOH . D 4 HOH A 89 1289 76 HOH HOH . D 4 HOH A 90 1290 39 HOH HOH . D 4 HOH A 91 1291 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAR . . . B 2 -31.442 20.833 35.426 0.87 39.03 ? C1 GAR 1101 A 1 HETATM 2 O O6 GAR . . . B 2 -30.978 21.802 36.36 0.87 41.12 ? O6 GAR 1101 A 1 HETATM 3 C C2 GAR . . . B 2 -30.312 20.241 34.582 0.87 41.09 ? C2 GAR 1101 A 1 HETATM 4 O O8 GAR . . . B 2 -29.206 21.105 34.394 0.87 42.68 ? O8 GAR 1101 A 1 HETATM 5 C C3 GAR . . . B 2 -29.944 18.969 35.362 0.87 42.33 ? C3 GAR 1101 A 1 HETATM 6 O O4 GAR . . . B 2 -31.177 18.524 35.955 0.87 39.57 ? O4 GAR 1101 A 1 HETATM 7 C C5 GAR . . . B 2 -32.038 19.65 36.202 0.87 37.15 ? C5 GAR 1101 A 1 HETATM 8 C C10 GAR . . . B 2 -33.466 19.341 35.8 0.87 37.91 ? C10 GAR 1101 A 1 HETATM 9 O O12 GAR . . . B 2 -34.3 20.46 36.098 0.87 36.12 ? O12 GAR 1101 A 1 HETATM 10 N N19 GAR . . . B 2 -29.342 17.944 34.552 0.87 47.9 ? N19 GAR 1101 A 1 HETATM 11 C C21 GAR . . . B 2 -28.131 17.458 34.839 0.87 49.82 ? C21 GAR 1101 A 1 HETATM 12 O O22 GAR . . . B 2 -27.503 17.751 35.846 0.87 46.99 ? O22 GAR 1101 A 1 HETATM 13 C C23 GAR . . . B 2 -27.536 16.513 33.82 0.87 49.52 ? C23 GAR 1101 A 1 HETATM 14 N N24 GAR . . . B 2 -26.959 17.23 32.694 0.87 47.74 ? N24 GAR 1101 A 1 HETATM 15 P P15 GAR . . . B 2 -35.835 20.477 35.609 0.87 35.34 ? P15 GAR 1101 A 1 HETATM 16 O O16 GAR . . . B 2 -35.73 21.024 34.207 0.87 36.13 ? O16 GAR 1101 A 1 HETATM 17 O O17 GAR . . . B 2 -36.527 21.39 36.594 0.87 30.32 ? O17 GAR 1101 A 1 HETATM 18 O O18 GAR . . . B 2 -36.284 19.034 35.656 0.87 37.3 ? O18 GAR 1101 A 1 HETATM 19 H H1 GAR . . . B 2 -32.164 21.347 34.776 0.87 46.84 ? H1 GAR 1101 A 1 HETATM 20 H HO6 GAR . . . B 2 -30.167 22.21 36.025 0.87 49.35 ? HO6 GAR 1101 A 1 HETATM 21 H H2 GAR . . . B 2 -30.622 20.054 33.545 0.87 49.3 ? H2 GAR 1101 A 1 HETATM 22 H HO8 GAR . . . B 2 -28.695 20.813 33.626 0.87 51.22 ? HO8 GAR 1101 A 1 HETATM 23 H H3 GAR . . . B 2 -29.169 19.196 36.107 0.87 50.8 ? H3 GAR 1101 A 1 HETATM 24 H H5 GAR . . . B 2 -32.084 19.891 37.273 0.87 44.58 ? H5 GAR 1101 A 1 HETATM 25 H H101 GAR . . . B 2 -33.511 19.12 34.732 0.87 45.49 ? H101 GAR 1101 A 1 HETATM 26 H H102 GAR . . . B 2 -33.821 18.461 36.34 0.87 45.49 ? H102 GAR 1101 A 1 HETATM 27 H H19 GAR . . . B 2 -29.853 17.593 33.754 0.87 57.48 ? H19 GAR 1101 A 1 HETATM 28 H H231 GAR . . . B 2 -28.313 15.838 33.457 0.87 59.42 ? H231 GAR 1101 A 1 HETATM 29 H H232 GAR . . . B 2 -26.762 15.909 34.297 0.87 59.42 ? H232 GAR 1101 A 1 HETATM 30 H H241 GAR . . . B 2 -26.991 18.239 32.668 0.87 57.29 ? H241 GAR 1101 A 1 HETATM 31 H H242 GAR . . . B 2 -26.526 16.719 31.938 0.87 57.29 ? H242 GAR 1101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #