data_8FJX
#
_model_server_result.job_id            bVavFCgzFWJFu707yAnf9g 
_model_server_result.datetime_utc      '2024-10-10 11:23:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fjx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    8FJX 
#
_exptl.entry_id    8FJX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              475.518 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{5-[5-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]thiophene-2-carbonyl}-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8FJX 
_cell.length_a            75.251 
_cell.length_b            75.251 
_cell.length_c            100.037 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FJX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H25 N5 O6 S' 
_chem_comp.formula_weight    475.518 
_chem_comp.id                Y7L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{5-[5-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]thiophene-2-carbonyl}-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N11 C2 Y7L sing 407 n n 
N3 C2 Y7L sing 408 n n 
N3 C4 Y7L sing 409 n n 
C2 N1 Y7L doub 410 n n 
O10 C4 Y7L doub 411 n n 
C4 C8 Y7L sing 412 n n 
N1 C9 Y7L sing 413 n n 
C8 C9 Y7L doub 414 n y 
C8 N7 Y7L sing 415 n y 
C9 C5 Y7L sing 416 n y 
N7 C29 Y7L sing 417 n n 
N7 C6 Y7L sing 418 n y 
C5 C6 Y7L doub 419 n y 
C29 C30 Y7L sing 420 n n 
C30 C31 Y7L sing 421 n n 
C31 C32 Y7L sing 422 n n 
C32 C33 Y7L sing 423 n n 
C15 C14 Y7L sing 424 n y 
C15 C16 Y7L doub 425 n y 
C33 C16 Y7L sing 426 n n 
O28 C26 Y7L doub 427 n n 
C14 C13 Y7L doub 428 n y 
C16 S12 Y7L sing 429 n y 
C13 S12 Y7L sing 430 n y 
C13 C17 Y7L sing 431 n n 
C26 O27 Y7L sing 432 n n 
C26 C20 Y7L sing 433 n n 
N19 C17 Y7L sing 434 n n 
N19 C20 Y7L sing 435 n n 
C17 O18 Y7L doub 436 n n 
C20 C21 Y7L sing 437 n n 
C21 C22 Y7L sing 438 n n 
C22 C23 Y7L sing 439 n n 
O25 C23 Y7L doub 440 n n 
C23 O24 Y7L sing 441 n n 
C5 H1 Y7L sing 442 n n 
C6 H2 Y7L sing 443 n n 
N3 H3 Y7L sing 444 n n 
C14 H4 Y7L sing 445 n n 
C15 H5 Y7L sing 446 n n 
C20 H6 Y7L sing 447 n n 
C21 H7 Y7L sing 448 n n 
C21 H8 Y7L sing 449 n n 
C22 H9 Y7L sing 450 n n 
C22 H10 Y7L sing 451 n n 
C29 H11 Y7L sing 452 n n 
C29 H12 Y7L sing 453 n n 
C30 H13 Y7L sing 454 n n 
C30 H14 Y7L sing 455 n n 
C31 H15 Y7L sing 456 n n 
C31 H16 Y7L sing 457 n n 
C32 H17 Y7L sing 458 n n 
C32 H18 Y7L sing 459 n n 
C33 H19 Y7L sing 460 n n 
C33 H20 Y7L sing 461 n n 
N11 H21 Y7L sing 462 n n 
N11 H22 Y7L sing 463 n n 
N19 H23 Y7L sing 464 n n 
O24 H24 Y7L sing 465 n n 
O27 H25 Y7L sing 466 n n 
#
_atom_sites.entry_id                     8FJX 
_atom_sites.fract_transf_matrix[1][1]    0.013289 
_atom_sites.fract_transf_matrix[1][2]    0.007672 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Y7L A 1 1101 1101 Y7L G32 . 
C 3 GAR A 1 1102 1102 GAR GAR . 
D 4 HOH A 1 1201 4 HOH HOH . 
D 4 HOH A 2 1202 54 HOH HOH . 
D 4 HOH A 3 1203 28 HOH HOH . 
D 4 HOH A 4 1204 70 HOH HOH . 
D 4 HOH A 5 1205 15 HOH HOH . 
D 4 HOH A 6 1206 12 HOH HOH . 
D 4 HOH A 7 1207 20 HOH HOH . 
D 4 HOH A 8 1208 45 HOH HOH . 
D 4 HOH A 9 1209 75 HOH HOH . 
D 4 HOH A 10 1210 38 HOH HOH . 
D 4 HOH A 11 1211 13 HOH HOH . 
D 4 HOH A 12 1212 23 HOH HOH . 
D 4 HOH A 13 1213 25 HOH HOH . 
D 4 HOH A 14 1214 43 HOH HOH . 
D 4 HOH A 15 1215 33 HOH HOH . 
D 4 HOH A 16 1216 3 HOH HOH . 
D 4 HOH A 17 1217 48 HOH HOH . 
D 4 HOH A 18 1218 36 HOH HOH . 
D 4 HOH A 19 1219 19 HOH HOH . 
D 4 HOH A 20 1220 32 HOH HOH . 
D 4 HOH A 21 1221 64 HOH HOH . 
D 4 HOH A 22 1222 63 HOH HOH . 
D 4 HOH A 23 1223 61 HOH HOH . 
D 4 HOH A 24 1224 35 HOH HOH . 
D 4 HOH A 25 1225 9 HOH HOH . 
D 4 HOH A 26 1226 49 HOH HOH . 
D 4 HOH A 27 1227 34 HOH HOH . 
D 4 HOH A 28 1228 24 HOH HOH . 
D 4 HOH A 29 1229 1 HOH HOH . 
D 4 HOH A 30 1230 2 HOH HOH . 
D 4 HOH A 31 1231 39 HOH HOH . 
D 4 HOH A 32 1232 22 HOH HOH . 
D 4 HOH A 33 1233 16 HOH HOH . 
D 4 HOH A 34 1234 65 HOH HOH . 
D 4 HOH A 35 1235 7 HOH HOH . 
D 4 HOH A 36 1236 57 HOH HOH . 
D 4 HOH A 37 1237 60 HOH HOH . 
D 4 HOH A 38 1238 53 HOH HOH . 
D 4 HOH A 39 1239 21 HOH HOH . 
D 4 HOH A 40 1240 44 HOH HOH . 
D 4 HOH A 41 1241 26 HOH HOH . 
D 4 HOH A 42 1242 40 HOH HOH . 
D 4 HOH A 43 1243 46 HOH HOH . 
D 4 HOH A 44 1244 50 HOH HOH . 
D 4 HOH A 45 1245 67 HOH HOH . 
D 4 HOH A 46 1246 11 HOH HOH . 
D 4 HOH A 47 1247 73 HOH HOH . 
D 4 HOH A 48 1248 17 HOH HOH . 
D 4 HOH A 49 1249 71 HOH HOH . 
D 4 HOH A 50 1250 5 HOH HOH . 
D 4 HOH A 51 1251 29 HOH HOH . 
D 4 HOH A 52 1252 30 HOH HOH . 
D 4 HOH A 53 1253 37 HOH HOH . 
D 4 HOH A 54 1254 72 HOH HOH . 
D 4 HOH A 55 1255 31 HOH HOH . 
D 4 HOH A 56 1256 55 HOH HOH . 
D 4 HOH A 57 1257 8 HOH HOH . 
D 4 HOH A 58 1258 27 HOH HOH . 
D 4 HOH A 59 1259 66 HOH HOH . 
D 4 HOH A 60 1260 68 HOH HOH . 
D 4 HOH A 61 1261 58 HOH HOH . 
D 4 HOH A 62 1262 59 HOH HOH . 
D 4 HOH A 63 1263 47 HOH HOH . 
D 4 HOH A 64 1264 10 HOH HOH . 
D 4 HOH A 65 1265 41 HOH HOH . 
D 4 HOH A 66 1266 62 HOH HOH . 
D 4 HOH A 67 1267 74 HOH HOH . 
D 4 HOH A 68 1268 6 HOH HOH . 
D 4 HOH A 69 1269 52 HOH HOH . 
D 4 HOH A 70 1270 76 HOH HOH . 
D 4 HOH A 71 1271 56 HOH HOH . 
D 4 HOH A 72 1272 69 HOH HOH . 
D 4 HOH A 73 1273 14 HOH HOH . 
D 4 HOH A 74 1274 18 HOH HOH . 
D 4 HOH A 75 1275 42 HOH HOH . 
D 4 HOH A 76 1276 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 Y7L . . . B 2 25.647 -12.682 -22.922 0.88 43.35 ? C8 Y7L 1101 A 1 
HETATM 2 N N7 Y7L . . . B 2 26.321 -13.631 -22.231 0.88 48.47 ? N7 Y7L 1101 A 1 
HETATM 3 C C5 Y7L . . . B 2 27.529 -11.789 -22.114 0.88 46.7 ? C5 Y7L 1101 A 1 
HETATM 4 C C6 Y7L . . . B 2 27.446 -13.127 -21.74 0.88 44.43 ? C6 Y7L 1101 A 1 
HETATM 5 N N1 Y7L . . . B 2 25.829 -10.444 -23.527 0.88 43.08 ? N1 Y7L 1101 A 1 
HETATM 6 C C2 Y7L . . . B 2 24.673 -10.517 -24.173 0.88 49.48 ? C2 Y7L 1101 A 1 
HETATM 7 N N3 Y7L . . . B 2 23.959 -11.636 -24.234 0.88 47.96 ? N3 Y7L 1101 A 1 
HETATM 8 C C4 Y7L . . . B 2 24.411 -12.725 -23.627 0.88 51.55 ? C4 Y7L 1101 A 1 
HETATM 9 C C13 Y7L . . . B 2 25.997 -11.061 -16.245 0.88 56.41 ? C13 Y7L 1101 A 1 
HETATM 10 C C14 Y7L . . . B 2 26.926 -11.692 -17.087 0.88 57.63 ? C14 Y7L 1101 A 1 
HETATM 11 C C15 Y7L . . . B 2 26.497 -12.977 -17.562 0.88 57.65 ? C15 Y7L 1101 A 1 
HETATM 12 C C16 Y7L . . . B 2 25.235 -13.372 -17.086 0.88 45.95 ? C16 Y7L 1101 A 1 
HETATM 13 C C17 Y7L . . . B 2 26.073 -9.698 -15.559 0.88 59.01 ? C17 Y7L 1101 A 1 
HETATM 14 C C20 Y7L . . . B 2 27.196 -7.552 -15.017 0.88 55.71 ? C20 Y7L 1101 A 1 
HETATM 15 C C21 Y7L . . . B 2 28.32 -7.513 -13.983 0.88 49.82 ? C21 Y7L 1101 A 1 
HETATM 16 C C22 Y7L . . . B 2 27.884 -8.294 -12.739 0.88 57.04 ? C22 Y7L 1101 A 1 
HETATM 17 C C23 Y7L . . . B 2 28.987 -8.499 -11.703 0.88 72.67 ? C23 Y7L 1101 A 1 
HETATM 18 C C26 Y7L . . . B 2 27.327 -6.442 -16.051 0.88 62.17 ? C26 Y7L 1101 A 1 
HETATM 19 C C29 Y7L . . . B 2 25.855 -14.995 -22.073 0.88 49.52 ? C29 Y7L 1101 A 1 
HETATM 20 C C30 Y7L . . . B 2 26.097 -15.456 -20.641 0.88 53.71 ? C30 Y7L 1101 A 1 
HETATM 21 C C31 Y7L . . . B 2 24.851 -15.296 -19.774 0.88 56.59 ? C31 Y7L 1101 A 1 
HETATM 22 C C32 Y7L . . . B 2 25.191 -15.597 -18.313 0.88 62.85 ? C32 Y7L 1101 A 1 
HETATM 23 C C33 Y7L . . . B 2 24.459 -14.656 -17.367 0.88 48.96 ? C33 Y7L 1101 A 1 
HETATM 24 C C9 Y7L . . . B 2 26.355 -11.512 -22.884 0.88 45.26 ? C9 Y7L 1101 A 1 
HETATM 25 N N11 Y7L . . . B 2 24.171 -9.332 -24.841 0.88 50.65 ? N11 Y7L 1101 A 1 
HETATM 26 N N19 Y7L . . . B 2 27.222 -8.833 -15.706 0.88 62.16 ? N19 Y7L 1101 A 1 
HETATM 27 O O10 Y7L . . . B 2 23.68 -13.918 -23.675 0.88 57.25 ? O10 Y7L 1101 A 1 
HETATM 28 O O18 Y7L . . . B 2 25.159 -9.345 -14.897 0.88 61.81 ? O18 Y7L 1101 A 1 
HETATM 29 O O24 Y7L . . . B 2 28.804 -8.02 -10.397 0.88 73.81 ? O24 Y7L 1101 A 1 
HETATM 30 O O25 Y7L . . . B 2 30.165 -9.17 -12.049 0.88 74.88 ? O25 Y7L 1101 A 1 
HETATM 31 O O27 Y7L . . . B 2 26.902 -5.284 -15.794 0.88 63.52 ? O27 Y7L 1101 A 1 
HETATM 32 O O28 Y7L . . . B 2 27.846 -6.697 -17.171 0.88 62.05 ? O28 Y7L 1101 A 1 
HETATM 33 S S12 Y7L . . . B 2 24.69 -12.112 -16.115 0.88 51.04 ? S12 Y7L 1101 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#