data_8FJY # _model_server_result.job_id -H0pqXQaWGItgeJiKlW0OA _model_server_result.datetime_utc '2024-10-10 11:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fjy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8FJY # _exptl.entry_id 8FJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCINAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FJY _cell.length_a 75.478 _cell.length_b 75.478 _cell.length_c 100.771 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H13 N2 O8 P -2' _chem_comp.formula_weight 284.16 _chem_comp.id GAR _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCINAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 GAR sing 83 n n C1 C2 GAR sing 84 n n C1 C5 GAR sing 85 n n C1 H1 GAR sing 86 n n O6 HO6 GAR sing 87 n n C2 O8 GAR sing 88 n n C2 C3 GAR sing 89 n n C2 H2 GAR sing 90 n n O8 HO8 GAR sing 91 n n C3 O4 GAR sing 92 n n C3 N19 GAR sing 93 n n C3 H3 GAR sing 94 n n O4 C5 GAR sing 95 n n C5 C10 GAR sing 96 n n C5 H5 GAR sing 97 n n C10 O12 GAR sing 98 n n C10 H101 GAR sing 99 n n C10 H102 GAR sing 100 n n O12 P15 GAR sing 101 n n N19 C21 GAR sing 102 n n N19 H19 GAR sing 103 n n C21 O22 GAR doub 104 n n C21 C23 GAR sing 105 n n C23 N24 GAR sing 106 n n C23 H231 GAR sing 107 n n C23 H232 GAR sing 108 n n N24 H241 GAR sing 109 n n N24 H242 GAR sing 110 n n P15 O16 GAR doub 111 n n P15 O17 GAR sing 112 n n P15 O18 GAR sing 113 n n # _atom_sites.entry_id 8FJY _atom_sites.fract_transf_matrix[1][1] 0.013249 _atom_sites.fract_transf_matrix[1][2] 0.007649 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1101 GAR GAR . C 3 Y6U A 1 1102 1201 Y6U G29 . D 4 HOH A 1 1201 15 HOH HOH . D 4 HOH A 2 1202 11 HOH HOH . D 4 HOH A 3 1203 7 HOH HOH . D 4 HOH A 4 1204 8 HOH HOH . D 4 HOH A 5 1205 6 HOH HOH . D 4 HOH A 6 1206 9 HOH HOH . D 4 HOH A 7 1207 5 HOH HOH . D 4 HOH A 8 1208 2 HOH HOH . D 4 HOH A 9 1209 1 HOH HOH . D 4 HOH A 10 1210 13 HOH HOH . D 4 HOH A 11 1211 3 HOH HOH . D 4 HOH A 12 1212 10 HOH HOH . D 4 HOH A 13 1213 4 HOH HOH . D 4 HOH A 14 1214 14 HOH HOH . D 4 HOH A 15 1215 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAR . . . B 2 -31.675 21.464 35.537 1 48.46 ? C1 GAR 1101 A 1 HETATM 2 O O6 GAR . . . B 2 -31.095 22.204 36.602 1 55.97 ? O6 GAR 1101 A 1 HETATM 3 C C2 GAR . . . B 2 -30.607 20.887 34.601 1 50.09 ? C2 GAR 1101 A 1 HETATM 4 O O8 GAR . . . B 2 -29.451 21.681 34.511 1 47.29 ? O8 GAR 1101 A 1 HETATM 5 C C3 GAR . . . B 2 -30.324 19.516 35.238 1 51.93 ? C3 GAR 1101 A 1 HETATM 6 O O4 GAR . . . B 2 -31.536 19.105 35.899 1 45.37 ? O4 GAR 1101 A 1 HETATM 7 C C5 GAR . . . B 2 -32.407 20.236 36.099 1 46.25 ? C5 GAR 1101 A 1 HETATM 8 C C10 GAR . . . B 2 -33.753 20.007 35.452 1 43.59 ? C10 GAR 1101 A 1 HETATM 9 O O12 GAR . . . B 2 -34.755 20.652 36.243 1 42.46 ? O12 GAR 1101 A 1 HETATM 10 N N19 GAR . . . B 2 -29.922 18.477 34.338 1 62.72 ? N19 GAR 1101 A 1 HETATM 11 C C21 GAR . . . B 2 -28.944 17.671 34.723 1 61.85 ? C21 GAR 1101 A 1 HETATM 12 O O22 GAR . . . B 2 -28.474 17.696 35.856 1 63.78 ? O22 GAR 1101 A 1 HETATM 13 C C23 GAR . . . B 2 -28.446 16.695 33.691 1 54.47 ? C23 GAR 1101 A 1 HETATM 14 N N24 GAR . . . B 2 -27.327 15.956 34.238 1 62.67 ? N24 GAR 1101 A 1 HETATM 15 P P15 GAR . . . B 2 -36.299 20.614 35.807 1 51.1 ? P15 GAR 1101 A 1 HETATM 16 O O16 GAR . . . B 2 -36.362 20.792 34.317 1 40.88 ? O16 GAR 1101 A 1 HETATM 17 O O17 GAR . . . B 2 -36.737 19.226 36.23 1 47.66 ? O17 GAR 1101 A 1 HETATM 18 O O18 GAR . . . B 2 -36.84 21.794 36.588 1 41.68 ? O18 GAR 1101 A 1 HETATM 19 H H1 GAR . . . B 2 -32.338 22.16 35.006 1 58.15 ? H1 GAR 1101 A 1 HETATM 20 H HO6 GAR . . . B 2 -30.444 22.825 36.246 1 67.16 ? HO6 GAR 1101 A 1 HETATM 21 H H2 GAR . . . B 2 -30.939 20.835 33.555 1 60.11 ? H2 GAR 1101 A 1 HETATM 22 H HO8 GAR . . . B 2 -28.969 21.459 33.703 1 56.75 ? HO8 GAR 1101 A 1 HETATM 23 H H3 GAR . . . B 2 -29.462 19.659 35.905 1 62.31 ? H3 GAR 1101 A 1 HETATM 24 H H5 GAR . . . B 2 -32.622 20.388 37.167 1 55.49 ? H5 GAR 1101 A 1 HETATM 25 H H101 GAR . . . B 2 -33.756 20.413 34.439 1 52.3 ? H101 GAR 1101 A 1 HETATM 26 H H102 GAR . . . B 2 -33.96 18.937 35.385 1 52.3 ? H102 GAR 1101 A 1 HETATM 27 H H19 GAR . . . B 2 -30.378 18.372 33.443 1 75.26 ? H19 GAR 1101 A 1 HETATM 28 H H231 GAR . . . B 2 -28.135 17.23 32.791 1 65.36 ? H231 GAR 1101 A 1 HETATM 29 H H232 GAR . . . B 2 -29.247 16.006 33.412 1 65.36 ? H232 GAR 1101 A 1 HETATM 30 H H241 GAR . . . B 2 -27.009 16.145 35.178 1 75.21 ? H241 GAR 1101 A 1 HETATM 31 H H242 GAR . . . B 2 -26.865 15.253 33.68 1 75.21 ? H242 GAR 1101 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #