data_8FKD # _model_server_result.job_id ZRGC1y0JahckAGmwnijyKw _model_server_result.datetime_utc '2024-11-12 20:39:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 8FKD # _exptl.entry_id 8FKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FKD _cell.length_a 62.125 _cell.length_b 62.125 _cell.length_c 162.209 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 84 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id Y5O _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id Y5O _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8FKD _atom_sites.fract_transf_matrix[1][1] 0.016097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y5O A 1 501 501 Y5O 068 . D 4 EDO A 1 502 502 EDO EDO . E 4 EDO A 1 503 503 EDO EDO . F 4 EDO A 1 504 504 EDO EDO . G 5 HOH A 1 601 94 HOH HOH . G 5 HOH A 2 602 18 HOH HOH . G 5 HOH A 3 603 12 HOH HOH . G 5 HOH A 4 604 93 HOH HOH . G 5 HOH A 5 605 15 HOH HOH . G 5 HOH A 6 606 32 HOH HOH . G 5 HOH A 7 607 13 HOH HOH . G 5 HOH A 8 608 6 HOH HOH . G 5 HOH A 9 609 88 HOH HOH . G 5 HOH A 10 610 24 HOH HOH . G 5 HOH A 11 611 39 HOH HOH . G 5 HOH A 12 612 19 HOH HOH . G 5 HOH A 13 613 54 HOH HOH . G 5 HOH A 14 614 10 HOH HOH . G 5 HOH A 15 615 60 HOH HOH . G 5 HOH A 16 616 3 HOH HOH . G 5 HOH A 17 617 91 HOH HOH . G 5 HOH A 18 618 37 HOH HOH . G 5 HOH A 19 619 76 HOH HOH . G 5 HOH A 20 620 23 HOH HOH . G 5 HOH A 21 621 92 HOH HOH . G 5 HOH A 22 622 7 HOH HOH . G 5 HOH A 23 623 100 HOH HOH . G 5 HOH A 24 624 29 HOH HOH . G 5 HOH A 25 625 17 HOH HOH . G 5 HOH A 26 626 14 HOH HOH . G 5 HOH A 27 627 33 HOH HOH . G 5 HOH A 28 628 8 HOH HOH . G 5 HOH A 29 629 62 HOH HOH . G 5 HOH A 30 630 28 HOH HOH . G 5 HOH A 31 631 16 HOH HOH . G 5 HOH A 32 632 38 HOH HOH . G 5 HOH A 33 633 9 HOH HOH . G 5 HOH A 34 634 11 HOH HOH . G 5 HOH A 35 635 2 HOH HOH . G 5 HOH A 36 636 48 HOH HOH . G 5 HOH A 37 637 20 HOH HOH . G 5 HOH A 38 638 4 HOH HOH . G 5 HOH A 39 639 1 HOH HOH . G 5 HOH A 40 640 55 HOH HOH . G 5 HOH A 41 641 85 HOH HOH . G 5 HOH A 42 642 70 HOH HOH . G 5 HOH A 43 643 98 HOH HOH . G 5 HOH A 44 644 44 HOH HOH . G 5 HOH A 45 645 34 HOH HOH . G 5 HOH A 46 646 89 HOH HOH . G 5 HOH A 47 647 81 HOH HOH . G 5 HOH A 48 648 50 HOH HOH . G 5 HOH A 49 649 80 HOH HOH . G 5 HOH A 50 650 87 HOH HOH . G 5 HOH A 51 651 26 HOH HOH . G 5 HOH A 52 652 21 HOH HOH . G 5 HOH A 53 653 22 HOH HOH . G 5 HOH A 54 654 41 HOH HOH . G 5 HOH A 55 655 63 HOH HOH . G 5 HOH A 56 656 5 HOH HOH . G 5 HOH A 57 657 71 HOH HOH . G 5 HOH A 58 658 84 HOH HOH . G 5 HOH A 59 659 61 HOH HOH . G 5 HOH A 60 660 31 HOH HOH . G 5 HOH A 61 661 96 HOH HOH . G 5 HOH A 62 662 66 HOH HOH . G 5 HOH A 63 663 47 HOH HOH . G 5 HOH A 64 664 46 HOH HOH . G 5 HOH A 65 665 25 HOH HOH . G 5 HOH A 66 666 68 HOH HOH . G 5 HOH A 67 667 57 HOH HOH . G 5 HOH A 68 668 104 HOH HOH . G 5 HOH A 69 669 36 HOH HOH . G 5 HOH A 70 670 52 HOH HOH . G 5 HOH A 71 671 83 HOH HOH . G 5 HOH A 72 672 72 HOH HOH . G 5 HOH A 73 673 73 HOH HOH . G 5 HOH A 74 674 40 HOH HOH . G 5 HOH A 75 675 42 HOH HOH . G 5 HOH A 76 676 90 HOH HOH . G 5 HOH A 77 677 35 HOH HOH . G 5 HOH A 78 678 107 HOH HOH . G 5 HOH A 79 679 103 HOH HOH . G 5 HOH A 80 680 51 HOH HOH . G 5 HOH A 81 681 101 HOH HOH . G 5 HOH A 82 682 53 HOH HOH . G 5 HOH A 83 683 69 HOH HOH . G 5 HOH A 84 684 102 HOH HOH . G 5 HOH A 85 685 43 HOH HOH . G 5 HOH A 86 686 67 HOH HOH . G 5 HOH A 87 687 106 HOH HOH . G 5 HOH A 88 688 27 HOH HOH . G 5 HOH A 89 689 58 HOH HOH . G 5 HOH A 90 690 75 HOH HOH . G 5 HOH A 91 691 59 HOH HOH . G 5 HOH A 92 692 30 HOH HOH . G 5 HOH A 93 693 56 HOH HOH . G 5 HOH A 94 694 95 HOH HOH . G 5 HOH A 95 695 99 HOH HOH . G 5 HOH A 96 696 97 HOH HOH . H 5 HOH D 1 2301 65 HOH HOH . H 5 HOH D 2 2302 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 22.738 15.449 15.202 1 53.98 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . E 4 21.317 15.275 15.19 1 46.64 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . E 4 23.075 16.783 15.852 1 49.39 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . E 4 24.156 17.389 15.138 1 47.58 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #