data_8FKE # _model_server_result.job_id 8QRZ3QG63McJWaSPOIkvoA _model_server_result.datetime_utc '2024-12-21 15:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8FKE # _exptl.entry_id 8FKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.69 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-N-(2-methylpyridin-4-yl)-5-nitrobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FKE _cell.length_a 61.888 _cell.length_b 61.888 _cell.length_c 164.288 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 84 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id Y5T _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id Y5T _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.765 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H10 Cl N3 O3' _chem_comp.formula_weight 291.69 _chem_comp.id Y5T _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-N-(2-methylpyridin-4-yl)-5-nitrobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 Y5T sing 357 n n N20 C19 Y5T doub 358 n y N20 C02 Y5T sing 359 n y C19 C18 Y5T sing 360 n y C02 C03 Y5T doub 361 n y C18 C04 Y5T doub 362 n y C03 C04 Y5T sing 363 n y C04 N05 Y5T sing 364 n n N05 C06 Y5T sing 365 n n O07 C06 Y5T doub 366 n n C06 C08 Y5T sing 367 n n C09 C08 Y5T doub 368 n y C09 C10 Y5T sing 369 n y C08 C16 Y5T sing 370 n y O13 N11 Y5T doub 371 n n N11 C10 Y5T sing 372 n n N11 O12 Y5T sing 373 n n C10 C14 Y5T doub 374 n y C16 C15 Y5T doub 375 n y C14 C15 Y5T sing 376 n y C16 CL1 Y5T sing 377 n n C15 H1 Y5T sing 378 n n C01 H2 Y5T sing 379 n n C01 H3 Y5T sing 380 n n C01 H4 Y5T sing 381 n n C03 H5 Y5T sing 382 n n C09 H6 Y5T sing 383 n n C14 H7 Y5T sing 384 n n C18 H8 Y5T sing 385 n n C19 H9 Y5T sing 386 n n N05 H10 Y5T sing 387 n n # _atom_sites.entry_id 8FKE _atom_sites.fract_transf_matrix[1][1] 0.016158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y5T A 1 501 501 Y5T 904 . D 4 EDO A 1 502 502 EDO EDO . E 4 EDO A 1 503 505 EDO EDO . F 5 HOH A 1 601 92 HOH HOH . F 5 HOH A 2 602 210 HOH HOH . F 5 HOH A 3 603 41 HOH HOH . F 5 HOH A 4 604 98 HOH HOH . F 5 HOH A 5 605 80 HOH HOH . F 5 HOH A 6 606 52 HOH HOH . F 5 HOH A 7 607 26 HOH HOH . F 5 HOH A 8 608 193 HOH HOH . F 5 HOH A 9 609 153 HOH HOH . F 5 HOH A 10 610 13 HOH HOH . F 5 HOH A 11 611 138 HOH HOH . F 5 HOH A 12 612 51 HOH HOH . F 5 HOH A 13 613 62 HOH HOH . F 5 HOH A 14 614 243 HOH HOH . F 5 HOH A 15 615 122 HOH HOH . F 5 HOH A 16 616 87 HOH HOH . F 5 HOH A 17 617 1 HOH HOH . F 5 HOH A 18 618 107 HOH HOH . F 5 HOH A 19 619 45 HOH HOH . F 5 HOH A 20 620 195 HOH HOH . F 5 HOH A 21 621 16 HOH HOH . F 5 HOH A 22 622 78 HOH HOH . F 5 HOH A 23 623 48 HOH HOH . F 5 HOH A 24 624 97 HOH HOH . F 5 HOH A 25 625 247 HOH HOH . F 5 HOH A 26 626 144 HOH HOH . F 5 HOH A 27 627 77 HOH HOH . F 5 HOH A 28 628 215 HOH HOH . F 5 HOH A 29 629 38 HOH HOH . F 5 HOH A 30 630 76 HOH HOH . F 5 HOH A 31 631 54 HOH HOH . F 5 HOH A 32 632 34 HOH HOH . F 5 HOH A 33 633 174 HOH HOH . F 5 HOH A 34 634 169 HOH HOH . F 5 HOH A 35 635 58 HOH HOH . F 5 HOH A 36 636 111 HOH HOH . F 5 HOH A 37 637 43 HOH HOH . F 5 HOH A 38 638 17 HOH HOH . F 5 HOH A 39 639 234 HOH HOH . F 5 HOH A 40 640 160 HOH HOH . F 5 HOH A 41 641 23 HOH HOH . F 5 HOH A 42 642 7 HOH HOH . F 5 HOH A 43 643 91 HOH HOH . F 5 HOH A 44 644 65 HOH HOH . F 5 HOH A 45 645 120 HOH HOH . F 5 HOH A 46 646 202 HOH HOH . F 5 HOH A 47 647 6 HOH HOH . F 5 HOH A 48 648 21 HOH HOH . F 5 HOH A 49 649 86 HOH HOH . F 5 HOH A 50 650 18 HOH HOH . F 5 HOH A 51 651 55 HOH HOH . F 5 HOH A 52 652 72 HOH HOH . F 5 HOH A 53 653 205 HOH HOH . F 5 HOH A 54 654 28 HOH HOH . F 5 HOH A 55 655 172 HOH HOH . F 5 HOH A 56 656 67 HOH HOH . F 5 HOH A 57 657 121 HOH HOH . F 5 HOH A 58 658 57 HOH HOH . F 5 HOH A 59 659 31 HOH HOH . F 5 HOH A 60 660 94 HOH HOH . F 5 HOH A 61 661 19 HOH HOH . F 5 HOH A 62 662 166 HOH HOH . F 5 HOH A 63 663 211 HOH HOH . F 5 HOH A 64 664 189 HOH HOH . F 5 HOH A 65 665 79 HOH HOH . F 5 HOH A 66 666 150 HOH HOH . F 5 HOH A 67 667 12 HOH HOH . F 5 HOH A 68 668 14 HOH HOH . F 5 HOH A 69 669 15 HOH HOH . F 5 HOH A 70 670 177 HOH HOH . F 5 HOH A 71 671 197 HOH HOH . F 5 HOH A 72 672 11 HOH HOH . F 5 HOH A 73 673 59 HOH HOH . F 5 HOH A 74 674 61 HOH HOH . F 5 HOH A 75 675 162 HOH HOH . F 5 HOH A 76 676 5 HOH HOH . F 5 HOH A 77 677 134 HOH HOH . F 5 HOH A 78 678 66 HOH HOH . F 5 HOH A 79 679 29 HOH HOH . F 5 HOH A 80 680 187 HOH HOH . F 5 HOH A 81 681 10 HOH HOH . F 5 HOH A 82 682 4 HOH HOH . F 5 HOH A 83 683 157 HOH HOH . F 5 HOH A 84 684 22 HOH HOH . F 5 HOH A 85 685 167 HOH HOH . F 5 HOH A 86 686 81 HOH HOH . F 5 HOH A 87 687 56 HOH HOH . F 5 HOH A 88 688 148 HOH HOH . F 5 HOH A 89 689 47 HOH HOH . F 5 HOH A 90 690 33 HOH HOH . F 5 HOH A 91 691 8 HOH HOH . F 5 HOH A 92 692 93 HOH HOH . F 5 HOH A 93 693 213 HOH HOH . F 5 HOH A 94 694 176 HOH HOH . F 5 HOH A 95 695 190 HOH HOH . F 5 HOH A 96 696 115 HOH HOH . F 5 HOH A 97 697 103 HOH HOH . F 5 HOH A 98 698 129 HOH HOH . F 5 HOH A 99 699 156 HOH HOH . F 5 HOH A 100 700 9 HOH HOH . F 5 HOH A 101 701 85 HOH HOH . F 5 HOH A 102 702 104 HOH HOH . F 5 HOH A 103 703 101 HOH HOH . F 5 HOH A 104 704 198 HOH HOH . F 5 HOH A 105 705 96 HOH HOH . F 5 HOH A 106 706 50 HOH HOH . F 5 HOH A 107 707 152 HOH HOH . F 5 HOH A 108 708 3 HOH HOH . F 5 HOH A 109 709 89 HOH HOH . F 5 HOH A 110 710 102 HOH HOH . F 5 HOH A 111 711 126 HOH HOH . F 5 HOH A 112 712 73 HOH HOH . F 5 HOH A 113 713 118 HOH HOH . F 5 HOH A 114 714 44 HOH HOH . F 5 HOH A 115 715 245 HOH HOH . F 5 HOH A 116 716 179 HOH HOH . F 5 HOH A 117 717 105 HOH HOH . F 5 HOH A 118 718 32 HOH HOH . F 5 HOH A 119 719 25 HOH HOH . F 5 HOH A 120 720 222 HOH HOH . F 5 HOH A 121 721 140 HOH HOH . F 5 HOH A 122 722 2 HOH HOH . F 5 HOH A 123 723 90 HOH HOH . F 5 HOH A 124 724 30 HOH HOH . F 5 HOH A 125 725 145 HOH HOH . F 5 HOH A 126 726 223 HOH HOH . F 5 HOH A 127 727 194 HOH HOH . F 5 HOH A 128 728 228 HOH HOH . F 5 HOH A 129 729 178 HOH HOH . F 5 HOH A 130 730 229 HOH HOH . F 5 HOH A 131 731 119 HOH HOH . F 5 HOH A 132 732 151 HOH HOH . F 5 HOH A 133 733 71 HOH HOH . F 5 HOH A 134 734 181 HOH HOH . F 5 HOH A 135 735 46 HOH HOH . F 5 HOH A 136 736 39 HOH HOH . F 5 HOH A 137 737 143 HOH HOH . F 5 HOH A 138 738 251 HOH HOH . F 5 HOH A 139 739 142 HOH HOH . F 5 HOH A 140 740 232 HOH HOH . F 5 HOH A 141 741 136 HOH HOH . F 5 HOH A 142 742 207 HOH HOH . F 5 HOH A 143 743 182 HOH HOH . F 5 HOH A 144 744 109 HOH HOH . F 5 HOH A 145 745 238 HOH HOH . F 5 HOH A 146 746 106 HOH HOH . F 5 HOH A 147 747 154 HOH HOH . F 5 HOH A 148 748 24 HOH HOH . F 5 HOH A 149 749 95 HOH HOH . F 5 HOH A 150 750 214 HOH HOH . F 5 HOH A 151 751 49 HOH HOH . F 5 HOH A 152 752 131 HOH HOH . F 5 HOH A 153 753 37 HOH HOH . F 5 HOH A 154 754 133 HOH HOH . F 5 HOH A 155 755 84 HOH HOH . F 5 HOH A 156 756 75 HOH HOH . F 5 HOH A 157 757 241 HOH HOH . F 5 HOH A 158 758 164 HOH HOH . F 5 HOH A 159 759 130 HOH HOH . F 5 HOH A 160 760 216 HOH HOH . F 5 HOH A 161 761 219 HOH HOH . F 5 HOH A 162 762 137 HOH HOH . F 5 HOH A 163 763 230 HOH HOH . F 5 HOH A 164 764 196 HOH HOH . F 5 HOH A 165 765 252 HOH HOH . F 5 HOH A 166 766 217 HOH HOH . F 5 HOH A 167 767 141 HOH HOH . F 5 HOH A 168 768 132 HOH HOH . F 5 HOH A 169 769 139 HOH HOH . F 5 HOH A 170 770 168 HOH HOH . F 5 HOH A 171 771 218 HOH HOH . F 5 HOH A 172 772 186 HOH HOH . F 5 HOH A 173 773 36 HOH HOH . F 5 HOH A 174 774 27 HOH HOH . F 5 HOH A 175 775 127 HOH HOH . F 5 HOH A 176 776 224 HOH HOH . F 5 HOH A 177 777 226 HOH HOH . F 5 HOH A 178 778 135 HOH HOH . F 5 HOH A 179 779 248 HOH HOH . F 5 HOH A 180 780 239 HOH HOH . F 5 HOH A 181 781 74 HOH HOH . F 5 HOH A 182 782 147 HOH HOH . F 5 HOH A 183 783 83 HOH HOH . F 5 HOH A 184 784 108 HOH HOH . F 5 HOH A 185 785 171 HOH HOH . F 5 HOH A 186 786 221 HOH HOH . F 5 HOH A 187 787 201 HOH HOH . F 5 HOH A 188 788 209 HOH HOH . F 5 HOH A 189 789 35 HOH HOH . F 5 HOH A 190 790 203 HOH HOH . F 5 HOH A 191 791 161 HOH HOH . F 5 HOH A 192 792 188 HOH HOH . F 5 HOH A 193 793 173 HOH HOH . F 5 HOH A 194 794 240 HOH HOH . F 5 HOH A 195 795 124 HOH HOH . F 5 HOH A 196 796 242 HOH HOH . F 5 HOH A 197 797 128 HOH HOH . F 5 HOH A 198 798 42 HOH HOH . F 5 HOH A 199 799 82 HOH HOH . F 5 HOH A 200 800 155 HOH HOH . F 5 HOH A 201 801 53 HOH HOH . F 5 HOH A 202 802 249 HOH HOH . F 5 HOH A 203 803 110 HOH HOH . F 5 HOH A 204 804 208 HOH HOH . F 5 HOH A 205 805 192 HOH HOH . F 5 HOH A 206 806 185 HOH HOH . F 5 HOH A 207 807 63 HOH HOH . F 5 HOH A 208 808 20 HOH HOH . F 5 HOH A 209 809 117 HOH HOH . F 5 HOH A 210 810 146 HOH HOH . F 5 HOH A 211 811 165 HOH HOH . F 5 HOH A 212 812 88 HOH HOH . F 5 HOH A 213 813 158 HOH HOH . F 5 HOH A 214 814 235 HOH HOH . F 5 HOH A 215 815 184 HOH HOH . F 5 HOH A 216 816 204 HOH HOH . F 5 HOH A 217 817 175 HOH HOH . F 5 HOH A 218 818 149 HOH HOH . F 5 HOH A 219 819 60 HOH HOH . F 5 HOH A 220 820 64 HOH HOH . F 5 HOH A 221 821 183 HOH HOH . F 5 HOH A 222 822 112 HOH HOH . F 5 HOH A 223 823 170 HOH HOH . F 5 HOH A 224 824 114 HOH HOH . F 5 HOH A 225 825 253 HOH HOH . F 5 HOH A 226 826 254 HOH HOH . F 5 HOH A 227 827 163 HOH HOH . F 5 HOH A 228 828 244 HOH HOH . F 5 HOH A 229 829 123 HOH HOH . F 5 HOH A 230 830 70 HOH HOH . F 5 HOH A 231 831 69 HOH HOH . F 5 HOH A 232 832 237 HOH HOH . F 5 HOH A 233 833 200 HOH HOH . F 5 HOH A 234 834 125 HOH HOH . G 5 HOH D 1 2301 159 HOH HOH . G 5 HOH D 2 2302 100 HOH HOH . G 5 HOH D 3 2303 250 HOH HOH . G 5 HOH D 4 2304 116 HOH HOH . G 5 HOH D 5 2305 40 HOH HOH . G 5 HOH D 6 2306 113 HOH HOH . G 5 HOH D 7 2307 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Y5T . . . C 3 -5.065 1.23 15.31 1 32.76 ? C10 Y5T 501 A 1 HETATM 2 C C15 Y5T . . . C 3 -6.797 2.29 16.519 1 36.32 ? C15 Y5T 501 A 1 HETATM 3 C C16 Y5T . . . C 3 -7.146 2.979 15.366 1 35.13 ? C16 Y5T 501 A 1 HETATM 4 N N20 Y5T . . . C 3 -5.812 5.5 8.258 1 34.96 ? N20 Y5T 501 A 1 HETATM 5 C C01 Y5T . . . C 3 -8.205 5.861 8.234 1 44.21 ? C01 Y5T 501 A 1 HETATM 6 C C02 Y5T . . . C 3 -6.973 5.353 8.922 1 37.55 ? C02 Y5T 501 A 1 HETATM 7 C C03 Y5T . . . C 3 -7.032 4.776 10.174 1 36.23 ? C03 Y5T 501 A 1 HETATM 8 C C04 Y5T . . . C 3 -5.851 4.316 10.75 1 35.1 ? C04 Y5T 501 A 1 HETATM 9 C C06 Y5T . . . C 3 -6.831 3.551 12.927 1 34.69 ? C06 Y5T 501 A 1 HETATM 10 C C08 Y5T . . . C 3 -6.473 2.775 14.165 1 34.95 ? C08 Y5T 501 A 1 HETATM 11 C C09 Y5T . . . C 3 -5.397 1.922 14.163 1 32.96 ? C09 Y5T 501 A 1 HETATM 12 C C14 Y5T . . . C 3 -5.739 1.403 16.493 1 30.32 ? C14 Y5T 501 A 1 HETATM 13 C C18 Y5T . . . C 3 -4.655 4.476 10.062 1 37.77 ? C18 Y5T 501 A 1 HETATM 14 C C19 Y5T . . . C 3 -4.679 5.065 8.83 1 36.23 ? C19 Y5T 501 A 1 HETATM 15 N N05 Y5T . . . C 3 -5.828 3.71 12.031 1 32.69 ? N05 Y5T 501 A 1 HETATM 16 N N11 Y5T . . . C 3 -3.944 0.289 15.265 1 33.78 ? N11 Y5T 501 A 1 HETATM 17 O O07 Y5T . . . C 3 -7.978 3.936 12.741 1 39.04 ? O07 Y5T 501 A 1 HETATM 18 O O12 Y5T . . . C 3 -3.655 -0.317 16.287 1 37.6 ? O12 Y5T 501 A 1 HETATM 19 O O13 Y5T . . . C 3 -3.356 0.141 14.205 1 38.33 -1 O13 Y5T 501 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 63 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #