data_8FKG # _model_server_result.job_id aEAhQ9BlL8V3qgAvj1MLpw _model_server_result.datetime_utc '2024-11-17 16:12:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8FKG # _exptl.entry_id 8FKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.673 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-N-(5-cyanopyridin-2-yl)-5-nitrobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FKG _cell.length_a 61.968 _cell.length_b 61.968 _cell.length_c 163.608 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 84 A CYS 285 1_555 D C05 Y62 . A Y62 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc1 F O3 SO4 . A SO4 504 1_555 O K K . A K 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? # _chem_comp.formula 'C13 H7 Cl N4 O3' _chem_comp.formula_weight 302.673 _chem_comp.id Y62 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-N-(5-cyanopyridin-2-yl)-5-nitrobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N16 C15 Y62 trip 374 n n C15 C12 Y62 sing 375 n n C12 C13 Y62 doub 376 n y C12 C11 Y62 sing 377 n y C13 C14 Y62 sing 378 n y C11 N10 Y62 doub 379 n y C14 C09 Y62 doub 380 n y N10 C09 Y62 sing 381 n y C09 N08 Y62 sing 382 n n N08 C07 Y62 sing 383 n n O17 C07 Y62 doub 384 n n C07 C06 Y62 sing 385 n n O20 N18 Y62 doub 386 n n C01 C06 Y62 doub 387 n y C01 C02 Y62 sing 388 n y C06 C05 Y62 sing 389 n y N18 C02 Y62 sing 390 n n N18 O19 Y62 sing 391 n n C02 C03 Y62 doub 392 n y C05 C04 Y62 doub 393 n y C03 C04 Y62 sing 394 n y C14 H1 Y62 sing 395 n n C13 H2 Y62 sing 396 n n C11 H3 Y62 sing 397 n n C01 H4 Y62 sing 398 n n C03 H5 Y62 sing 399 n n C04 H6 Y62 sing 400 n n N08 H8 Y62 sing 401 n n C05 CL1 Y62 sing 402 n n # _atom_sites.entry_id 8FKG _atom_sites.fract_transf_matrix[1][1] 0.016137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 501 2300 GOL GOL . D 4 Y62 A 1 502 501 Y62 486 . E 3 GOL A 1 503 602 GOL GOL . F 5 SO4 A 1 504 605 SO4 SO4 . G 6 EDO A 1 505 606 EDO EDO . H 6 EDO A 1 506 607 EDO EDO . I 6 EDO A 1 507 609 EDO EDO . J 6 EDO A 1 508 610 EDO EDO . K 6 EDO A 1 509 611 EDO EDO . L 6 EDO A 1 510 614 EDO EDO . M 6 EDO A 1 511 616 EDO EDO . N 6 EDO A 1 512 618 EDO EDO . O 7 K A 1 513 619 K K . P 8 HOH D 1 2301 84 HOH HOH . P 8 HOH D 2 2302 72 HOH HOH . Q 8 HOH A 1 601 14 HOH HOH . Q 8 HOH A 2 602 27 HOH HOH . Q 8 HOH A 3 603 26 HOH HOH . Q 8 HOH A 4 604 70 HOH HOH . Q 8 HOH A 5 605 89 HOH HOH . Q 8 HOH A 6 606 76 HOH HOH . Q 8 HOH A 7 607 75 HOH HOH . Q 8 HOH A 8 608 118 HOH HOH . Q 8 HOH A 9 609 24 HOH HOH . Q 8 HOH A 10 610 79 HOH HOH . Q 8 HOH A 11 611 59 HOH HOH . Q 8 HOH A 12 612 4 HOH HOH . Q 8 HOH A 13 613 39 HOH HOH . Q 8 HOH A 14 614 105 HOH HOH . Q 8 HOH A 15 615 2 HOH HOH . Q 8 HOH A 16 616 96 HOH HOH . Q 8 HOH A 17 617 11 HOH HOH . Q 8 HOH A 18 618 21 HOH HOH . Q 8 HOH A 19 619 98 HOH HOH . Q 8 HOH A 20 620 100 HOH HOH . Q 8 HOH A 21 621 38 HOH HOH . Q 8 HOH A 22 622 56 HOH HOH . Q 8 HOH A 23 623 119 HOH HOH . Q 8 HOH A 24 624 22 HOH HOH . Q 8 HOH A 25 625 5 HOH HOH . Q 8 HOH A 26 626 16 HOH HOH . Q 8 HOH A 27 627 18 HOH HOH . Q 8 HOH A 28 628 1 HOH HOH . Q 8 HOH A 29 629 60 HOH HOH . Q 8 HOH A 30 630 116 HOH HOH . Q 8 HOH A 31 631 91 HOH HOH . Q 8 HOH A 32 632 19 HOH HOH . Q 8 HOH A 33 633 63 HOH HOH . Q 8 HOH A 34 634 36 HOH HOH . Q 8 HOH A 35 635 12 HOH HOH . Q 8 HOH A 36 636 3 HOH HOH . Q 8 HOH A 37 637 90 HOH HOH . Q 8 HOH A 38 638 25 HOH HOH . Q 8 HOH A 39 639 30 HOH HOH . Q 8 HOH A 40 640 94 HOH HOH . Q 8 HOH A 41 641 7 HOH HOH . Q 8 HOH A 42 642 15 HOH HOH . Q 8 HOH A 43 643 28 HOH HOH . Q 8 HOH A 44 644 29 HOH HOH . Q 8 HOH A 45 645 67 HOH HOH . Q 8 HOH A 46 646 57 HOH HOH . Q 8 HOH A 47 647 17 HOH HOH . Q 8 HOH A 48 648 82 HOH HOH . Q 8 HOH A 49 649 121 HOH HOH . Q 8 HOH A 50 650 42 HOH HOH . Q 8 HOH A 51 651 99 HOH HOH . Q 8 HOH A 52 652 93 HOH HOH . Q 8 HOH A 53 653 54 HOH HOH . Q 8 HOH A 54 654 8 HOH HOH . Q 8 HOH A 55 655 88 HOH HOH . Q 8 HOH A 56 656 23 HOH HOH . Q 8 HOH A 57 657 52 HOH HOH . Q 8 HOH A 58 658 64 HOH HOH . Q 8 HOH A 59 659 69 HOH HOH . Q 8 HOH A 60 660 9 HOH HOH . Q 8 HOH A 61 661 102 HOH HOH . Q 8 HOH A 62 662 68 HOH HOH . Q 8 HOH A 63 663 44 HOH HOH . Q 8 HOH A 64 664 62 HOH HOH . Q 8 HOH A 65 665 10 HOH HOH . Q 8 HOH A 66 666 45 HOH HOH . Q 8 HOH A 67 667 51 HOH HOH . Q 8 HOH A 68 668 110 HOH HOH . Q 8 HOH A 69 669 65 HOH HOH . Q 8 HOH A 70 670 37 HOH HOH . Q 8 HOH A 71 671 6 HOH HOH . Q 8 HOH A 72 672 107 HOH HOH . Q 8 HOH A 73 673 86 HOH HOH . Q 8 HOH A 74 674 80 HOH HOH . Q 8 HOH A 75 675 47 HOH HOH . Q 8 HOH A 76 676 53 HOH HOH . Q 8 HOH A 77 677 103 HOH HOH . Q 8 HOH A 78 678 49 HOH HOH . Q 8 HOH A 79 679 35 HOH HOH . Q 8 HOH A 80 680 34 HOH HOH . Q 8 HOH A 81 681 33 HOH HOH . Q 8 HOH A 82 682 85 HOH HOH . Q 8 HOH A 83 683 115 HOH HOH . Q 8 HOH A 84 684 81 HOH HOH . Q 8 HOH A 85 685 13 HOH HOH . Q 8 HOH A 86 686 50 HOH HOH . Q 8 HOH A 87 687 58 HOH HOH . Q 8 HOH A 88 688 40 HOH HOH . Q 8 HOH A 89 689 32 HOH HOH . Q 8 HOH A 90 690 92 HOH HOH . Q 8 HOH A 91 691 120 HOH HOH . Q 8 HOH A 92 692 129 HOH HOH . Q 8 HOH A 93 693 74 HOH HOH . Q 8 HOH A 94 694 66 HOH HOH . Q 8 HOH A 95 695 104 HOH HOH . Q 8 HOH A 96 696 55 HOH HOH . Q 8 HOH A 97 697 127 HOH HOH . Q 8 HOH A 98 698 126 HOH HOH . Q 8 HOH A 99 699 78 HOH HOH . Q 8 HOH A 100 700 131 HOH HOH . Q 8 HOH A 101 701 46 HOH HOH . Q 8 HOH A 102 702 31 HOH HOH . Q 8 HOH A 103 703 41 HOH HOH . Q 8 HOH A 104 704 87 HOH HOH . Q 8 HOH A 105 705 113 HOH HOH . Q 8 HOH A 106 706 48 HOH HOH . Q 8 HOH A 107 707 43 HOH HOH . Q 8 HOH A 108 708 130 HOH HOH . Q 8 HOH A 109 709 111 HOH HOH . Q 8 HOH A 110 710 101 HOH HOH . Q 8 HOH A 111 711 128 HOH HOH . Q 8 HOH A 112 712 71 HOH HOH . Q 8 HOH A 113 713 61 HOH HOH . Q 8 HOH A 114 714 132 HOH HOH . Q 8 HOH A 115 715 124 HOH HOH . Q 8 HOH A 116 716 117 HOH HOH . Q 8 HOH A 117 717 20 HOH HOH . Q 8 HOH A 118 718 95 HOH HOH . Q 8 HOH A 119 719 73 HOH HOH . Q 8 HOH A 120 720 108 HOH HOH . Q 8 HOH A 121 721 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 Y62 . . . D 4 -4.585 4.696 9.997 1 27.34 ? C14 Y62 502 A 1 HETATM 2 C C13 Y62 . . . D 4 -4.716 5.313 8.772 1 32.28 ? C13 Y62 502 A 1 HETATM 3 C C12 Y62 . . . D 4 -5.97 5.741 8.359 1 33.31 ? C12 Y62 502 A 1 HETATM 4 C C15 Y62 . . . D 4 -6.156 6.391 7.09 1 28.69 ? C15 Y62 502 A 1 HETATM 5 C C11 Y62 . . . D 4 -7.05 5.535 9.22 1 36.61 ? C11 Y62 502 A 1 HETATM 6 C C01 Y62 . . . D 4 -5.358 2 14.114 1 35.7 ? C01 Y62 502 A 1 HETATM 7 C C02 Y62 . . . D 4 -5.002 1.33 15.264 1 39.34 ? C02 Y62 502 A 1 HETATM 8 C C03 Y62 . . . D 4 -5.577 1.603 16.482 1 30.32 ? C03 Y62 502 A 1 HETATM 9 C C04 Y62 . . . D 4 -6.562 2.57 16.537 1 40.88 ? C04 Y62 502 A 1 HETATM 10 C C05 Y62 . . . D 4 -6.939 3.238 15.381 1 32.34 ? C05 Y62 502 A 1 HETATM 11 C C06 Y62 . . . D 4 -6.378 2.924 14.145 1 34.35 ? C06 Y62 502 A 1 HETATM 12 C C07 Y62 . . . D 4 -6.736 3.674 12.895 1 42.11 ? C07 Y62 502 A 1 HETATM 13 C C09 Y62 . . . D 4 -5.721 4.523 10.784 1 36.55 ? C09 Y62 502 A 1 HETATM 14 N N08 Y62 . . . D 4 -5.695 3.901 12.042 1 31.98 ? N08 Y62 502 A 1 HETATM 15 N N10 Y62 . . . D 4 -6.935 4.941 10.403 1 29.81 ? N10 Y62 502 A 1 HETATM 16 N N16 Y62 . . . D 4 -6.303 6.912 6.085 1 33.72 ? N16 Y62 502 A 1 HETATM 17 N N18 Y62 . . . D 4 -3.955 0.309 15.19 1 37.29 ? N18 Y62 502 A 1 HETATM 18 O O17 Y62 . . . D 4 -7.903 3.965 12.648 1 38.58 ? O17 Y62 502 A 1 HETATM 19 O O19 Y62 . . . D 4 -3.636 -0.27 16.218 1 52.2 -1 O19 Y62 502 A 1 HETATM 20 O O20 Y62 . . . D 4 -3.452 0.076 14.101 1 46.89 ? O20 Y62 502 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 1092 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 20 #