data_8FLK # _model_server_result.job_id 9rG5J1V5lyVE45cehC56uQ _model_server_result.datetime_utc '2024-10-19 03:41:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8flk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8FLK # _exptl.entry_id 8FLK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 674.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cGAMP _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FLK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N # _chem_comp.formula 'C20 H24 N10 O13 P2' _chem_comp.formula_weight 674.411 _chem_comp.id 1SY _chem_comp.mon_nstd_flag . _chem_comp.name cGAMP _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2',3' cGAMP;c-GMP-AMP;c[G(2',5')pA(3',5')p]" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O44 P18 1SY doub 1 n n O19 P18 1SY sing 2 n n P18 O17 1SY sing 3 n n P18 O20 1SY sing 4 n n O17 C16 1SY sing 5 n n O4' C4' 1SY sing 6 n n O4' C1' 1SY sing 7 n n C16 C4' 1SY sing 8 n n C8 N7 1SY doub 9 n y C8 N9 1SY sing 10 n y N7 C5 1SY sing 11 n y O20 C21 1SY sing 12 n n N9 C1' 1SY sing 13 n n N9 C4 1SY sing 14 n y N41 C40 1SY sing 15 n n C4' C3' 1SY sing 16 n n C1' C2' 1SY sing 17 n n C5 C4 1SY doub 18 n y C5 C6 1SY sing 19 n y N01 C6 1SY sing 20 n n C4 N3 1SY sing 21 n y C40 N42 1SY sing 22 n n C40 N39 1SY doub 23 n n C6 N1 1SY doub 24 n y N42 C36 1SY sing 25 n n N39 C38 1SY sing 26 n n C21 C22 1SY sing 27 n n C21 C32 1SY sing 28 n n O23 C22 1SY sing 29 n n N3 C2 1SY doub 30 n y C3' C2' 1SY sing 31 n n C3' O28 1SY sing 32 n n N1 C2 1SY sing 33 n y C2' O2' 1SY sing 34 n n C36 C37 1SY doub 35 n y C36 N33 1SY sing 36 n y C38 O43 1SY doub 37 n n C38 C37 1SY sing 38 n n C22 C24 1SY sing 39 n n C32 N33 1SY sing 40 n n C32 O31 1SY sing 41 n n C37 N35 1SY sing 42 n y N33 C34 1SY sing 43 n y O28 P27 1SY sing 44 n n N35 C34 1SY doub 45 n y O31 C24 1SY sing 46 n n C24 C25 1SY sing 47 n n O26 P27 1SY sing 48 n n O26 C25 1SY sing 49 n n P27 O29 1SY doub 50 n n P27 O30 1SY sing 51 n n C2 H1 1SY sing 52 n n N01 H2 1SY sing 53 n n N01 H3 1SY sing 54 n n C8 H4 1SY sing 55 n n C1' H5 1SY sing 56 n n C2' H6 1SY sing 57 n n O2' H7 1SY sing 58 n n C3' H8 1SY sing 59 n n C4' H9 1SY sing 60 n n C16 H10 1SY sing 61 n n C16 H11 1SY sing 62 n n O19 H12 1SY sing 63 n n C21 H13 1SY sing 64 n n C22 H14 1SY sing 65 n n O23 H15 1SY sing 66 n n C24 H16 1SY sing 67 n n C25 H17 1SY sing 68 n n C25 H18 1SY sing 69 n n O30 H19 1SY sing 70 n n C32 H20 1SY sing 71 n n C34 H21 1SY sing 72 n n N41 H22 1SY sing 73 n n N41 H23 1SY sing 74 n n N42 H24 1SY sing 75 n n # _atom_sites.entry_id 8FLK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1SY A 1 401 1 1SY 1SY . F 3 Y6H A 1 402 2 Y6H STG . G 2 1SY C 1 401 2 1SY 1SY . H 3 Y6H C 1 402 1 Y6H STG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1SY . . . E 2 98.917 101.358 127.318 1 114.8 ? C2 1SY 401 A 1 HETATM 2 N N01 1SY . . . E 2 96.557 103.296 129.095 1 114.8 ? N01 1SY 401 A 1 HETATM 3 C C6 1SY . . . E 2 97.246 102.904 127.932 1 114.8 ? C6 1SY 401 A 1 HETATM 4 N N1 1SY . . . E 2 98.111 101.925 128.272 1 114.8 ? N1 1SY 401 A 1 HETATM 5 N N3 1SY . . . E 2 98.841 101.782 126.019 1 114.8 ? N3 1SY 401 A 1 HETATM 6 C C4 1SY . . . E 2 97.959 102.774 125.685 1 114.8 ? C4 1SY 401 A 1 HETATM 7 C C5 1SY . . . E 2 97.168 103.339 126.622 1 114.8 ? C5 1SY 401 A 1 HETATM 8 N N7 1SY . . . E 2 96.401 104.285 126.022 1 114.8 ? N7 1SY 401 A 1 HETATM 9 C C8 1SY . . . E 2 96.722 104.311 124.705 1 114.8 ? C8 1SY 401 A 1 HETATM 10 N N9 1SY . . . E 2 97.684 103.384 124.51 1 114.8 ? N9 1SY 401 A 1 HETATM 11 C C1' 1SY . . . E 2 98.232 103.146 123.269 1 114.8 ? C1' 1SY 401 A 1 HETATM 12 C C2' 1SY . . . E 2 97.561 101.931 122.693 1 114.8 ? C2' 1SY 401 A 1 HETATM 13 O O2' 1SY . . . E 2 98.522 101.16 121.996 1 114.8 ? O2' 1SY 401 A 1 HETATM 14 C C3' 1SY . . . E 2 96.588 102.5 121.775 1 114.8 ? C3' 1SY 401 A 1 HETATM 15 C C4' 1SY . . . E 2 97.318 103.603 121.243 1 114.8 ? C4' 1SY 401 A 1 HETATM 16 C C16 1SY . . . E 2 96.351 104.621 120.533 1 114.8 ? C16 1SY 401 A 1 HETATM 17 O O17 1SY . . . E 2 95.549 105.303 121.562 1 114.8 ? O17 1SY 401 A 1 HETATM 18 P P18 1SY . . . E 2 94.431 106.347 121.059 1 114.8 ? P18 1SY 401 A 1 HETATM 19 O O19 1SY . . . E 2 94.823 107.818 121.259 1 114.8 ? O19 1SY 401 A 1 HETATM 20 O O20 1SY . . . E 2 92.876 105.974 121.575 1 114.8 ? O20 1SY 401 A 1 HETATM 21 C C21 1SY . . . E 2 92.787 104.556 121.859 1 114.8 ? C21 1SY 401 A 1 HETATM 22 C C22 1SY . . . E 2 92.643 103.784 120.633 1 114.8 ? C22 1SY 401 A 1 HETATM 23 O O23 1SY . . . E 2 91.935 104.571 119.678 1 114.8 ? O23 1SY 401 A 1 HETATM 24 C C24 1SY . . . E 2 91.813 102.614 121.039 1 114.8 ? C24 1SY 401 A 1 HETATM 25 C C25 1SY . . . E 2 92.569 101.581 121.711 1 114.8 ? C25 1SY 401 A 1 HETATM 26 O O26 1SY . . . E 2 93.956 101.913 121.755 1 114.8 ? O26 1SY 401 A 1 HETATM 27 P P27 1SY . . . E 2 94.808 100.776 121.009 1 114.8 ? P27 1SY 401 A 1 HETATM 28 O O28 1SY . . . E 2 96.239 101.544 120.731 1 114.8 ? O28 1SY 401 A 1 HETATM 29 O O29 1SY . . . E 2 95.073 99.695 122.039 1 114.8 ? O29 1SY 401 A 1 HETATM 30 O O30 1SY . . . E 2 94.174 100.109 119.837 1 114.8 ? O30 1SY 401 A 1 HETATM 31 O O31 1SY . . . E 2 90.873 103.158 121.985 1 114.8 ? O31 1SY 401 A 1 HETATM 32 C C32 1SY . . . E 2 91.537 104.299 122.574 1 114.8 ? C32 1SY 401 A 1 HETATM 33 N N33 1SY . . . E 2 91.774 104.078 123.975 1 114.8 ? N33 1SY 401 A 1 HETATM 34 C C34 1SY . . . E 2 92.754 103.417 124.641 1 114.8 ? C34 1SY 401 A 1 HETATM 35 N N35 1SY . . . E 2 92.505 103.52 125.971 1 114.8 ? N35 1SY 401 A 1 HETATM 36 C C36 1SY . . . E 2 90.922 104.583 124.898 1 114.8 ? C36 1SY 401 A 1 HETATM 37 C C37 1SY . . . E 2 91.364 104.245 126.125 1 114.8 ? C37 1SY 401 A 1 HETATM 38 C C38 1SY . . . E 2 90.587 104.688 127.35 1 114.8 ? C38 1SY 401 A 1 HETATM 39 N N39 1SY . . . E 2 89.415 105.446 127.197 1 114.8 ? N39 1SY 401 A 1 HETATM 40 C C40 1SY . . . E 2 88.97 105.796 125.89 1 114.8 ? C40 1SY 401 A 1 HETATM 41 N N41 1SY . . . E 2 87.797 106.549 125.716 1 114.8 ? N41 1SY 401 A 1 HETATM 42 N N42 1SY . . . E 2 89.7 105.373 124.732 1 114.8 ? N42 1SY 401 A 1 HETATM 43 O O43 1SY . . . E 2 90.97 104.394 128.45 1 114.8 ? O43 1SY 401 A 1 HETATM 44 O O44 1SY . . . E 2 94.382 106.154 119.529 1 114.8 ? O44 1SY 401 A 1 HETATM 45 O O4' 1SY . . . E 2 97.942 104.222 122.351 1 114.8 ? O4' 1SY 401 A 1 HETATM 46 H H1 1SY . . . E 2 99.56 100.627 127.572 1 114.8 ? H1 1SY 401 A 1 HETATM 47 H H2 1SY . . . E 2 96.345 102.658 129.753 1 114.8 ? H2 1SY 401 A 1 HETATM 48 H H3 1SY . . . E 2 96.313 104.17 129.21 1 114.8 ? H3 1SY 401 A 1 HETATM 49 H H4 1SY . . . E 2 96.335 104.89 124.031 1 114.8 ? H4 1SY 401 A 1 HETATM 50 H H5 1SY . . . E 2 99.214 103 123.336 1 114.8 ? H5 1SY 401 A 1 HETATM 51 H H6 1SY . . . E 2 97.136 101.418 123.374 1 114.8 ? H6 1SY 401 A 1 HETATM 52 H H7 1SY . . . E 2 98.353 101.201 121.1 1 114.8 ? H7 1SY 401 A 1 HETATM 53 H H8 1SY . . . E 2 95.802 102.831 122.278 1 114.8 ? H8 1SY 401 A 1 HETATM 54 H H9 1SY . . . E 2 98.016 103.276 120.591 1 114.8 ? H9 1SY 401 A 1 HETATM 55 H H10 1SY . . . E 2 95.757 104.143 119.912 1 114.8 ? H10 1SY 401 A 1 HETATM 56 H H11 1SY . . . E 2 96.872 105.273 120.045 1 114.8 ? H11 1SY 401 A 1 HETATM 57 H H13 1SY . . . E 2 93.582 104.25 122.369 1 114.8 ? H13 1SY 401 A 1 HETATM 58 H H14 1SY . . . E 2 93.504 103.515 120.274 1 114.8 ? H14 1SY 401 A 1 HETATM 59 H H15 1SY . . . E 2 91.581 105.308 120.093 1 114.8 ? H15 1SY 401 A 1 HETATM 60 H H16 1SY . . . E 2 91.344 102.246 120.269 1 114.8 ? H16 1SY 401 A 1 HETATM 61 H H17 1SY . . . E 2 92.442 100.711 121.244 1 114.8 ? H17 1SY 401 A 1 HETATM 62 H H18 1SY . . . E 2 92.237 101.495 122.633 1 114.8 ? H18 1SY 401 A 1 HETATM 63 H H20 1SY . . . E 2 90.96 105.078 122.475 1 114.8 ? H20 1SY 401 A 1 HETATM 64 H H21 1SY . . . E 2 93.537 102.937 124.221 1 114.8 ? H21 1SY 401 A 1 HETATM 65 H H22 1SY . . . E 2 87.516 106.769 124.877 1 114.8 ? H22 1SY 401 A 1 HETATM 66 H H23 1SY . . . E 2 87.316 106.823 126.453 1 114.8 ? H23 1SY 401 A 1 HETATM 67 H H24 1SY . . . E 2 89.405 105.602 123.888 1 114.8 ? H24 1SY 401 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 67 #