data_8FLL # _model_server_result.job_id 7zA8nKDA8mYHAi6_Mg71vA _model_server_result.datetime_utc '2024-11-07 13:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8FLL # _exptl.entry_id 8FLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pirtobrutinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FLL _cell.length_a 41.482 _cell.length_b 67.269 _cell.length_c 90.383 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H21 F4 N5 O3' _chem_comp.formula_weight 479.427 _chem_comp.id Y7W _chem_comp.mon_nstd_flag . _chem_comp.name pirtobrutinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-amino-3-{4-[(5-fluoro-2-methoxybenzamido)methyl]phenyl}-1-[(2S)-1,1,1-trifluoropropan-2-yl]-1H-pyrazole-4-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F16 C15 Y7W sing 425 n n C17 C15 Y7W doub 426 n y C17 C18 Y7W sing 427 n y C15 C14 Y7W sing 428 n y C14 C13 Y7W doub 429 n y C18 C19 Y7W doub 430 n y C13 C19 Y7W sing 431 n y C13 C12 Y7W sing 432 n n C19 O20 Y7W sing 433 n n O22 C12 Y7W doub 434 n n C12 N11 Y7W sing 435 n n O20 C21 Y7W sing 436 n n N11 C10 Y7W sing 437 n n C23 C24 Y7W doub 438 n y C23 C9 Y7W sing 439 n y C10 C9 Y7W sing 440 n n C24 C6 Y7W sing 441 n y C9 C8 Y7W doub 442 n y C28 C27 Y7W sing 443 n n C6 C5 Y7W sing 444 n n C6 C7 Y7W doub 445 n y C8 C7 Y7W sing 446 n y N25 C5 Y7W doub 447 n y N25 N26 Y7W sing 448 n y C5 C4 Y7W sing 449 n y C27 N26 Y7W sing 450 n n C27 C29 Y7W sing 451 n n N26 C33 Y7W sing 452 n y F32 C29 Y7W sing 453 n n N3 C2 Y7W sing 454 n n C4 C33 Y7W doub 455 n y C4 C2 Y7W sing 456 n n C33 N34 Y7W sing 457 n n C29 F31 Y7W sing 458 n n C29 F30 Y7W sing 459 n n C2 O1 Y7W doub 460 n n N3 H1 Y7W sing 461 n n N3 H2 Y7W sing 462 n n C7 H3 Y7W sing 463 n n C8 H4 Y7W sing 464 n n C10 H5 Y7W sing 465 n n C10 H6 Y7W sing 466 n n C17 H7 Y7W sing 467 n n C21 H8 Y7W sing 468 n n C21 H9 Y7W sing 469 n n C21 H10 Y7W sing 470 n n C24 H11 Y7W sing 471 n n C28 H12 Y7W sing 472 n n C28 H13 Y7W sing 473 n n C28 H14 Y7W sing 474 n n N11 H15 Y7W sing 475 n n C14 H16 Y7W sing 476 n n C18 H17 Y7W sing 477 n n C23 H18 Y7W sing 478 n n C27 H19 Y7W sing 479 n n N34 H20 Y7W sing 480 n n N34 H21 Y7W sing 481 n n # _atom_sites.entry_id 8FLL _atom_sites.fract_transf_matrix[1][1] 0.024107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y7W A 1 701 701 Y7W LIG . C 3 SO4 A 1 702 702 SO4 SO4 . D 4 GOL A 1 703 703 GOL GOL . E 4 GOL A 1 704 704 GOL GOL . F 5 BTB A 1 705 705 BTB BTB . G 6 HOH A 1 801 80 HOH HOH . G 6 HOH A 2 802 178 HOH HOH . G 6 HOH A 3 803 127 HOH HOH . G 6 HOH A 4 804 22 HOH HOH . G 6 HOH A 5 805 88 HOH HOH . G 6 HOH A 6 806 218 HOH HOH . G 6 HOH A 7 807 173 HOH HOH . G 6 HOH A 8 808 23 HOH HOH . G 6 HOH A 9 809 157 HOH HOH . G 6 HOH A 10 810 109 HOH HOH . G 6 HOH A 11 811 32 HOH HOH . G 6 HOH A 12 812 82 HOH HOH . G 6 HOH A 13 813 240 HOH HOH . G 6 HOH A 14 814 10 HOH HOH . G 6 HOH A 15 815 99 HOH HOH . G 6 HOH A 16 816 18 HOH HOH . G 6 HOH A 17 817 72 HOH HOH . G 6 HOH A 18 818 112 HOH HOH . G 6 HOH A 19 819 68 HOH HOH . G 6 HOH A 20 820 219 HOH HOH . G 6 HOH A 21 821 25 HOH HOH . G 6 HOH A 22 822 234 HOH HOH . G 6 HOH A 23 823 42 HOH HOH . G 6 HOH A 24 824 78 HOH HOH . G 6 HOH A 25 825 31 HOH HOH . G 6 HOH A 26 826 13 HOH HOH . G 6 HOH A 27 827 267 HOH HOH . G 6 HOH A 28 828 54 HOH HOH . G 6 HOH A 29 829 20 HOH HOH . G 6 HOH A 30 830 181 HOH HOH . G 6 HOH A 31 831 169 HOH HOH . G 6 HOH A 32 832 193 HOH HOH . G 6 HOH A 33 833 16 HOH HOH . G 6 HOH A 34 834 93 HOH HOH . G 6 HOH A 35 835 79 HOH HOH . G 6 HOH A 36 836 17 HOH HOH . G 6 HOH A 37 837 67 HOH HOH . G 6 HOH A 38 838 38 HOH HOH . G 6 HOH A 39 839 111 HOH HOH . G 6 HOH A 40 840 44 HOH HOH . G 6 HOH A 41 841 81 HOH HOH . G 6 HOH A 42 842 36 HOH HOH . G 6 HOH A 43 843 41 HOH HOH . G 6 HOH A 44 844 9 HOH HOH . G 6 HOH A 45 845 213 HOH HOH . G 6 HOH A 46 846 60 HOH HOH . G 6 HOH A 47 847 37 HOH HOH . G 6 HOH A 48 848 30 HOH HOH . G 6 HOH A 49 849 19 HOH HOH . G 6 HOH A 50 850 244 HOH HOH . G 6 HOH A 51 851 6 HOH HOH . G 6 HOH A 52 852 230 HOH HOH . G 6 HOH A 53 853 156 HOH HOH . G 6 HOH A 54 854 26 HOH HOH . G 6 HOH A 55 855 184 HOH HOH . G 6 HOH A 56 856 106 HOH HOH . G 6 HOH A 57 857 63 HOH HOH . G 6 HOH A 58 858 11 HOH HOH . G 6 HOH A 59 859 46 HOH HOH . G 6 HOH A 60 860 35 HOH HOH . G 6 HOH A 61 861 146 HOH HOH . G 6 HOH A 62 862 73 HOH HOH . G 6 HOH A 63 863 198 HOH HOH . G 6 HOH A 64 864 15 HOH HOH . G 6 HOH A 65 865 2 HOH HOH . G 6 HOH A 66 866 21 HOH HOH . G 6 HOH A 67 867 84 HOH HOH . G 6 HOH A 68 868 261 HOH HOH . G 6 HOH A 69 869 48 HOH HOH . G 6 HOH A 70 870 8 HOH HOH . G 6 HOH A 71 871 50 HOH HOH . G 6 HOH A 72 872 250 HOH HOH . G 6 HOH A 73 873 65 HOH HOH . G 6 HOH A 74 874 7 HOH HOH . G 6 HOH A 75 875 83 HOH HOH . G 6 HOH A 76 876 172 HOH HOH . G 6 HOH A 77 877 74 HOH HOH . G 6 HOH A 78 878 55 HOH HOH . G 6 HOH A 79 879 1 HOH HOH . G 6 HOH A 80 880 265 HOH HOH . G 6 HOH A 81 881 182 HOH HOH . G 6 HOH A 82 882 228 HOH HOH . G 6 HOH A 83 883 3 HOH HOH . G 6 HOH A 84 884 105 HOH HOH . G 6 HOH A 85 885 115 HOH HOH . G 6 HOH A 86 886 71 HOH HOH . G 6 HOH A 87 887 34 HOH HOH . G 6 HOH A 88 888 14 HOH HOH . G 6 HOH A 89 889 57 HOH HOH . G 6 HOH A 90 890 101 HOH HOH . G 6 HOH A 91 891 47 HOH HOH . G 6 HOH A 92 892 4 HOH HOH . G 6 HOH A 93 893 209 HOH HOH . G 6 HOH A 94 894 168 HOH HOH . G 6 HOH A 95 895 255 HOH HOH . G 6 HOH A 96 896 28 HOH HOH . G 6 HOH A 97 897 5 HOH HOH . G 6 HOH A 98 898 161 HOH HOH . G 6 HOH A 99 899 151 HOH HOH . G 6 HOH A 100 900 53 HOH HOH . G 6 HOH A 101 901 176 HOH HOH . G 6 HOH A 102 902 203 HOH HOH . G 6 HOH A 103 903 95 HOH HOH . G 6 HOH A 104 904 49 HOH HOH . G 6 HOH A 105 905 220 HOH HOH . G 6 HOH A 106 906 122 HOH HOH . G 6 HOH A 107 907 139 HOH HOH . G 6 HOH A 108 908 117 HOH HOH . G 6 HOH A 109 909 51 HOH HOH . G 6 HOH A 110 910 91 HOH HOH . G 6 HOH A 111 911 94 HOH HOH . G 6 HOH A 112 912 102 HOH HOH . G 6 HOH A 113 913 56 HOH HOH . G 6 HOH A 114 914 12 HOH HOH . G 6 HOH A 115 915 45 HOH HOH . G 6 HOH A 116 916 216 HOH HOH . G 6 HOH A 117 917 33 HOH HOH . G 6 HOH A 118 918 247 HOH HOH . G 6 HOH A 119 919 191 HOH HOH . G 6 HOH A 120 920 130 HOH HOH . G 6 HOH A 121 921 92 HOH HOH . G 6 HOH A 122 922 237 HOH HOH . G 6 HOH A 123 923 149 HOH HOH . G 6 HOH A 124 924 257 HOH HOH . G 6 HOH A 125 925 24 HOH HOH . G 6 HOH A 126 926 75 HOH HOH . G 6 HOH A 127 927 253 HOH HOH . G 6 HOH A 128 928 118 HOH HOH . G 6 HOH A 129 929 128 HOH HOH . G 6 HOH A 130 930 100 HOH HOH . G 6 HOH A 131 931 27 HOH HOH . G 6 HOH A 132 932 39 HOH HOH . G 6 HOH A 133 933 52 HOH HOH . G 6 HOH A 134 934 114 HOH HOH . G 6 HOH A 135 935 243 HOH HOH . G 6 HOH A 136 936 238 HOH HOH . G 6 HOH A 137 937 248 HOH HOH . G 6 HOH A 138 938 107 HOH HOH . G 6 HOH A 139 939 266 HOH HOH . G 6 HOH A 140 940 235 HOH HOH . G 6 HOH A 141 941 150 HOH HOH . G 6 HOH A 142 942 108 HOH HOH . G 6 HOH A 143 943 232 HOH HOH . G 6 HOH A 144 944 254 HOH HOH . G 6 HOH A 145 945 192 HOH HOH . G 6 HOH A 146 946 89 HOH HOH . G 6 HOH A 147 947 153 HOH HOH . G 6 HOH A 148 948 210 HOH HOH . G 6 HOH A 149 949 239 HOH HOH . G 6 HOH A 150 950 224 HOH HOH . G 6 HOH A 151 951 231 HOH HOH . G 6 HOH A 152 952 177 HOH HOH . G 6 HOH A 153 953 245 HOH HOH . G 6 HOH A 154 954 160 HOH HOH . G 6 HOH A 155 955 233 HOH HOH . G 6 HOH A 156 956 174 HOH HOH . G 6 HOH A 157 957 165 HOH HOH . G 6 HOH A 158 958 246 HOH HOH . G 6 HOH A 159 959 183 HOH HOH . G 6 HOH A 160 960 252 HOH HOH . G 6 HOH A 161 961 185 HOH HOH . G 6 HOH A 162 962 163 HOH HOH . G 6 HOH A 163 963 155 HOH HOH . G 6 HOH A 164 964 158 HOH HOH . G 6 HOH A 165 965 159 HOH HOH . G 6 HOH A 166 966 162 HOH HOH . G 6 HOH A 167 967 196 HOH HOH . G 6 HOH A 168 968 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 Y7W . . . B 2 -21.311 1.705 1.087 1 16.6 ? N3 Y7W 701 A 1 HETATM 2 C C4 Y7W . . . B 2 -22.945 3.479 1.193 1 16.13 ? C4 Y7W 701 A 1 HETATM 3 C C5 Y7W . . . B 2 -23.945 3.056 0.27 1 16.43 ? C5 Y7W 701 A 1 HETATM 4 C C6 Y7W . . . B 2 -24.187 1.739 -0.344 1 16.15 ? C6 Y7W 701 A 1 HETATM 5 C C7 Y7W . . . B 2 -24.288 0.588 0.433 1 16.59 ? C7 Y7W 701 A 1 HETATM 6 C C8 Y7W . . . B 2 -24.553 -0.641 -0.154 1 18.29 ? C8 Y7W 701 A 1 HETATM 7 C C10 Y7W . . . B 2 -25.023 -2.095 -2.147 1 18.89 ? C10 Y7W 701 A 1 HETATM 8 C C13 Y7W . . . B 2 -23.874 -3.077 -5.618 1 19.53 ? C13 Y7W 701 A 1 HETATM 9 C C15 Y7W . . . B 2 -23.727 -3.902 -7.844 1 21.85 ? C15 Y7W 701 A 1 HETATM 10 C C17 Y7W . . . B 2 -22.369 -3.816 -7.859 1 20.15 ? C17 Y7W 701 A 1 HETATM 11 C C21 Y7W . . . B 2 -20.5 -2.246 -4.476 1 20.69 ? C21 Y7W 701 A 1 HETATM 12 C C24 Y7W . . . B 2 -24.325 1.621 -1.723 1 16.9 ? C24 Y7W 701 A 1 HETATM 13 C C28 Y7W . . . B 2 -25.398 6.83 -0.583 1 18.57 ? C28 Y7W 701 A 1 HETATM 14 O O1 Y7W . . . B 2 -21.115 3.311 2.646 1 17.05 ? O1 Y7W 701 A 1 HETATM 15 C C2 Y7W . . . B 2 -21.751 2.8 1.713 1 16.65 ? C2 Y7W 701 A 1 HETATM 16 C C9 Y7W . . . B 2 -24.712 -0.755 -1.523 1 17.49 ? C9 Y7W 701 A 1 HETATM 17 N N11 Y7W . . . B 2 -24.238 -2.343 -3.349 1 18.19 ? N11 Y7W 701 A 1 HETATM 18 C C12 Y7W . . . B 2 -24.8 -2.767 -4.485 1 20.91 ? C12 Y7W 701 A 1 HETATM 19 C C14 Y7W . . . B 2 -24.505 -3.559 -6.769 1 20.42 ? C14 Y7W 701 A 1 HETATM 20 F F16 Y7W . . . B 2 -24.352 -4.374 -8.949 1 25.05 ? F16 Y7W 701 A 1 HETATM 21 C C18 Y7W . . . B 2 -21.733 -3.343 -6.726 1 18.86 ? C18 Y7W 701 A 1 HETATM 22 C C19 Y7W . . . B 2 -22.478 -2.976 -5.616 1 19.08 ? C19 Y7W 701 A 1 HETATM 23 O O20 Y7W . . . B 2 -21.909 -2.475 -4.477 1 19.97 ? O20 Y7W 701 A 1 HETATM 24 O O22 Y7W . . . B 2 -26.026 -2.917 -4.609 1 23.07 ? O22 Y7W 701 A 1 HETATM 25 C C23 Y7W . . . B 2 -24.582 0.39 -2.301 1 15.95 ? C23 Y7W 701 A 1 HETATM 26 N N25 Y7W . . . B 2 -24.836 4.021 0.066 1 16.87 ? N25 Y7W 701 A 1 HETATM 27 N N26 Y7W . . . B 2 -24.437 5.071 0.854 1 17 ? N26 Y7W 701 A 1 HETATM 28 C C27 Y7W . . . B 2 -25.177 6.296 0.825 1 17.96 ? C27 Y7W 701 A 1 HETATM 29 C C29 Y7W . . . B 2 -26.481 6.145 1.574 1 21.18 ? C29 Y7W 701 A 1 HETATM 30 F F30 Y7W . . . B 2 -26.276 5.594 2.774 1 21.89 ? F30 Y7W 701 A 1 HETATM 31 F F31 Y7W . . . B 2 -27.069 7.324 1.784 1 22.48 ? F31 Y7W 701 A 1 HETATM 32 F F32 Y7W . . . B 2 -27.36 5.367 0.926 1 21.95 ? F32 Y7W 701 A 1 HETATM 33 C C33 Y7W . . . B 2 -23.321 4.783 1.553 1 16.91 ? C33 Y7W 701 A 1 HETATM 34 N N34 Y7W . . . B 2 -22.667 5.673 2.363 1 17.92 ? N34 Y7W 701 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 129 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #