data_8FLN # _model_server_result.job_id TbAupgQDN5UCc4ZdHi-biQ _model_server_result.datetime_utc '2024-11-07 13:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8FLN # _exptl.entry_id 8FLN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pirtobrutinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FLN _cell.length_a 41.595 _cell.length_b 67.036 _cell.length_c 90.675 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FLN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H21 F4 N5 O3' _chem_comp.formula_weight 479.427 _chem_comp.id Y7W _chem_comp.mon_nstd_flag . _chem_comp.name pirtobrutinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-amino-3-{4-[(5-fluoro-2-methoxybenzamido)methyl]phenyl}-1-[(2S)-1,1,1-trifluoropropan-2-yl]-1H-pyrazole-4-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F16 C15 Y7W sing 425 n n C17 C15 Y7W doub 426 n y C17 C18 Y7W sing 427 n y C15 C14 Y7W sing 428 n y C14 C13 Y7W doub 429 n y C18 C19 Y7W doub 430 n y C13 C19 Y7W sing 431 n y C13 C12 Y7W sing 432 n n C19 O20 Y7W sing 433 n n O22 C12 Y7W doub 434 n n C12 N11 Y7W sing 435 n n O20 C21 Y7W sing 436 n n N11 C10 Y7W sing 437 n n C23 C24 Y7W doub 438 n y C23 C9 Y7W sing 439 n y C10 C9 Y7W sing 440 n n C24 C6 Y7W sing 441 n y C9 C8 Y7W doub 442 n y C28 C27 Y7W sing 443 n n C6 C5 Y7W sing 444 n n C6 C7 Y7W doub 445 n y C8 C7 Y7W sing 446 n y N25 C5 Y7W doub 447 n y N25 N26 Y7W sing 448 n y C5 C4 Y7W sing 449 n y C27 N26 Y7W sing 450 n n C27 C29 Y7W sing 451 n n N26 C33 Y7W sing 452 n y F32 C29 Y7W sing 453 n n N3 C2 Y7W sing 454 n n C4 C33 Y7W doub 455 n y C4 C2 Y7W sing 456 n n C33 N34 Y7W sing 457 n n C29 F31 Y7W sing 458 n n C29 F30 Y7W sing 459 n n C2 O1 Y7W doub 460 n n N3 H1 Y7W sing 461 n n N3 H2 Y7W sing 462 n n C7 H3 Y7W sing 463 n n C8 H4 Y7W sing 464 n n C10 H5 Y7W sing 465 n n C10 H6 Y7W sing 466 n n C17 H7 Y7W sing 467 n n C21 H8 Y7W sing 468 n n C21 H9 Y7W sing 469 n n C21 H10 Y7W sing 470 n n C24 H11 Y7W sing 471 n n C28 H12 Y7W sing 472 n n C28 H13 Y7W sing 473 n n C28 H14 Y7W sing 474 n n N11 H15 Y7W sing 475 n n C14 H16 Y7W sing 476 n n C18 H17 Y7W sing 477 n n C23 H18 Y7W sing 478 n n C27 H19 Y7W sing 479 n n N34 H20 Y7W sing 480 n n N34 H21 Y7W sing 481 n n # _atom_sites.entry_id 8FLN _atom_sites.fract_transf_matrix[1][1] 0.024041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y7W A 1 701 701 Y7W LIG . C 3 SO4 A 1 702 702 SO4 SO4 . D 4 GOL A 1 703 703 GOL GOL . E 4 GOL A 1 704 704 GOL GOL . F 5 BTB A 1 705 705 BTB BTB . G 6 HOH A 1 801 182 HOH HOH . G 6 HOH A 2 802 60 HOH HOH . G 6 HOH A 3 803 48 HOH HOH . G 6 HOH A 4 804 186 HOH HOH . G 6 HOH A 5 805 157 HOH HOH . G 6 HOH A 6 806 25 HOH HOH . G 6 HOH A 7 807 168 HOH HOH . G 6 HOH A 8 808 101 HOH HOH . G 6 HOH A 9 809 163 HOH HOH . G 6 HOH A 10 810 97 HOH HOH . G 6 HOH A 11 811 51 HOH HOH . G 6 HOH A 12 812 91 HOH HOH . G 6 HOH A 13 813 69 HOH HOH . G 6 HOH A 14 814 106 HOH HOH . G 6 HOH A 15 815 160 HOH HOH . G 6 HOH A 16 816 179 HOH HOH . G 6 HOH A 17 817 138 HOH HOH . G 6 HOH A 18 818 37 HOH HOH . G 6 HOH A 19 819 77 HOH HOH . G 6 HOH A 20 820 105 HOH HOH . G 6 HOH A 21 821 16 HOH HOH . G 6 HOH A 22 822 27 HOH HOH . G 6 HOH A 23 823 171 HOH HOH . G 6 HOH A 24 824 18 HOH HOH . G 6 HOH A 25 825 21 HOH HOH . G 6 HOH A 26 826 158 HOH HOH . G 6 HOH A 27 827 169 HOH HOH . G 6 HOH A 28 828 74 HOH HOH . G 6 HOH A 29 829 188 HOH HOH . G 6 HOH A 30 830 102 HOH HOH . G 6 HOH A 31 831 42 HOH HOH . G 6 HOH A 32 832 76 HOH HOH . G 6 HOH A 33 833 82 HOH HOH . G 6 HOH A 34 834 15 HOH HOH . G 6 HOH A 35 835 129 HOH HOH . G 6 HOH A 36 836 35 HOH HOH . G 6 HOH A 37 837 12 HOH HOH . G 6 HOH A 38 838 199 HOH HOH . G 6 HOH A 39 839 19 HOH HOH . G 6 HOH A 40 840 84 HOH HOH . G 6 HOH A 41 841 173 HOH HOH . G 6 HOH A 42 842 28 HOH HOH . G 6 HOH A 43 843 100 HOH HOH . G 6 HOH A 44 844 57 HOH HOH . G 6 HOH A 45 845 94 HOH HOH . G 6 HOH A 46 846 29 HOH HOH . G 6 HOH A 47 847 22 HOH HOH . G 6 HOH A 48 848 62 HOH HOH . G 6 HOH A 49 849 8 HOH HOH . G 6 HOH A 50 850 52 HOH HOH . G 6 HOH A 51 851 231 HOH HOH . G 6 HOH A 52 852 156 HOH HOH . G 6 HOH A 53 853 33 HOH HOH . G 6 HOH A 54 854 11 HOH HOH . G 6 HOH A 55 855 2 HOH HOH . G 6 HOH A 56 856 20 HOH HOH . G 6 HOH A 57 857 177 HOH HOH . G 6 HOH A 58 858 3 HOH HOH . G 6 HOH A 59 859 7 HOH HOH . G 6 HOH A 60 860 70 HOH HOH . G 6 HOH A 61 861 40 HOH HOH . G 6 HOH A 62 862 9 HOH HOH . G 6 HOH A 63 863 115 HOH HOH . G 6 HOH A 64 864 71 HOH HOH . G 6 HOH A 65 865 54 HOH HOH . G 6 HOH A 66 866 152 HOH HOH . G 6 HOH A 67 867 72 HOH HOH . G 6 HOH A 68 868 24 HOH HOH . G 6 HOH A 69 869 73 HOH HOH . G 6 HOH A 70 870 13 HOH HOH . G 6 HOH A 71 871 59 HOH HOH . G 6 HOH A 72 872 128 HOH HOH . G 6 HOH A 73 873 49 HOH HOH . G 6 HOH A 74 874 61 HOH HOH . G 6 HOH A 75 875 122 HOH HOH . G 6 HOH A 76 876 240 HOH HOH . G 6 HOH A 77 877 31 HOH HOH . G 6 HOH A 78 878 10 HOH HOH . G 6 HOH A 79 879 41 HOH HOH . G 6 HOH A 80 880 67 HOH HOH . G 6 HOH A 81 881 78 HOH HOH . G 6 HOH A 82 882 197 HOH HOH . G 6 HOH A 83 883 154 HOH HOH . G 6 HOH A 84 884 50 HOH HOH . G 6 HOH A 85 885 1 HOH HOH . G 6 HOH A 86 886 5 HOH HOH . G 6 HOH A 87 887 167 HOH HOH . G 6 HOH A 88 888 4 HOH HOH . G 6 HOH A 89 889 165 HOH HOH . G 6 HOH A 90 890 17 HOH HOH . G 6 HOH A 91 891 205 HOH HOH . G 6 HOH A 92 892 88 HOH HOH . G 6 HOH A 93 893 85 HOH HOH . G 6 HOH A 94 894 55 HOH HOH . G 6 HOH A 95 895 220 HOH HOH . G 6 HOH A 96 896 64 HOH HOH . G 6 HOH A 97 897 112 HOH HOH . G 6 HOH A 98 898 30 HOH HOH . G 6 HOH A 99 899 155 HOH HOH . G 6 HOH A 100 900 34 HOH HOH . G 6 HOH A 101 901 45 HOH HOH . G 6 HOH A 102 902 6 HOH HOH . G 6 HOH A 103 903 142 HOH HOH . G 6 HOH A 104 904 140 HOH HOH . G 6 HOH A 105 905 32 HOH HOH . G 6 HOH A 106 906 56 HOH HOH . G 6 HOH A 107 907 39 HOH HOH . G 6 HOH A 108 908 196 HOH HOH . G 6 HOH A 109 909 131 HOH HOH . G 6 HOH A 110 910 212 HOH HOH . G 6 HOH A 111 911 241 HOH HOH . G 6 HOH A 112 912 175 HOH HOH . G 6 HOH A 113 913 229 HOH HOH . G 6 HOH A 114 914 116 HOH HOH . G 6 HOH A 115 915 190 HOH HOH . G 6 HOH A 116 916 133 HOH HOH . G 6 HOH A 117 917 23 HOH HOH . G 6 HOH A 118 918 44 HOH HOH . G 6 HOH A 119 919 166 HOH HOH . G 6 HOH A 120 920 120 HOH HOH . G 6 HOH A 121 921 108 HOH HOH . G 6 HOH A 122 922 178 HOH HOH . G 6 HOH A 123 923 14 HOH HOH . G 6 HOH A 124 924 90 HOH HOH . G 6 HOH A 125 925 238 HOH HOH . G 6 HOH A 126 926 43 HOH HOH . G 6 HOH A 127 927 183 HOH HOH . G 6 HOH A 128 928 194 HOH HOH . G 6 HOH A 129 929 235 HOH HOH . G 6 HOH A 130 930 38 HOH HOH . G 6 HOH A 131 931 161 HOH HOH . G 6 HOH A 132 932 118 HOH HOH . G 6 HOH A 133 933 46 HOH HOH . G 6 HOH A 134 934 159 HOH HOH . G 6 HOH A 135 935 66 HOH HOH . G 6 HOH A 136 936 95 HOH HOH . G 6 HOH A 137 937 80 HOH HOH . G 6 HOH A 138 938 132 HOH HOH . G 6 HOH A 139 939 200 HOH HOH . G 6 HOH A 140 940 68 HOH HOH . G 6 HOH A 141 941 230 HOH HOH . G 6 HOH A 142 942 181 HOH HOH . G 6 HOH A 143 943 232 HOH HOH . G 6 HOH A 144 944 96 HOH HOH . G 6 HOH A 145 945 217 HOH HOH . G 6 HOH A 146 946 202 HOH HOH . G 6 HOH A 147 947 63 HOH HOH . G 6 HOH A 148 948 201 HOH HOH . G 6 HOH A 149 949 164 HOH HOH . G 6 HOH A 150 950 143 HOH HOH . G 6 HOH A 151 951 246 HOH HOH . G 6 HOH A 152 952 219 HOH HOH . G 6 HOH A 153 953 151 HOH HOH . G 6 HOH A 154 954 210 HOH HOH . G 6 HOH A 155 955 209 HOH HOH . G 6 HOH A 156 956 125 HOH HOH . G 6 HOH A 157 957 198 HOH HOH . G 6 HOH A 158 958 218 HOH HOH . G 6 HOH A 159 959 206 HOH HOH . G 6 HOH A 160 960 192 HOH HOH . G 6 HOH A 161 961 104 HOH HOH . G 6 HOH A 162 962 153 HOH HOH . G 6 HOH A 163 963 224 HOH HOH . G 6 HOH A 164 964 58 HOH HOH . G 6 HOH A 165 965 203 HOH HOH . G 6 HOH A 166 966 247 HOH HOH . G 6 HOH A 167 967 180 HOH HOH . G 6 HOH A 168 968 248 HOH HOH . G 6 HOH A 169 969 215 HOH HOH . G 6 HOH A 170 970 172 HOH HOH . G 6 HOH A 171 971 185 HOH HOH . G 6 HOH A 172 972 162 HOH HOH . G 6 HOH A 173 973 144 HOH HOH . G 6 HOH A 174 974 239 HOH HOH . G 6 HOH A 175 975 236 HOH HOH . G 6 HOH A 176 976 189 HOH HOH . G 6 HOH A 177 977 221 HOH HOH . G 6 HOH A 178 978 204 HOH HOH . G 6 HOH A 179 979 150 HOH HOH . G 6 HOH A 180 980 147 HOH HOH . G 6 HOH A 181 981 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 Y7W . . . B 2 -21.376 1.659 1.136 1 16.53 ? N3 Y7W 701 A 1 HETATM 2 C C4 Y7W . . . B 2 -23.009 3.432 1.234 1 16.72 ? C4 Y7W 701 A 1 HETATM 3 C C5 Y7W . . . B 2 -24.02 3.01 0.319 1 17.08 ? C5 Y7W 701 A 1 HETATM 4 C C6 Y7W . . . B 2 -24.26 1.703 -0.31 1 16.45 ? C6 Y7W 701 A 1 HETATM 5 C C7 Y7W . . . B 2 -24.401 0.553 0.463 1 16.99 ? C7 Y7W 701 A 1 HETATM 6 C C8 Y7W . . . B 2 -24.667 -0.67 -0.134 1 18.18 ? C8 Y7W 701 A 1 HETATM 7 C C10 Y7W . . . B 2 -25.136 -2.1 -2.134 1 19.81 ? C10 Y7W 701 A 1 HETATM 8 C C13 Y7W . . . B 2 -23.905 -3.179 -5.558 1 19.91 ? C13 Y7W 701 A 1 HETATM 9 C C15 Y7W . . . B 2 -23.759 -4.043 -7.766 1 21.75 ? C15 Y7W 701 A 1 HETATM 10 C C17 Y7W . . . B 2 -22.412 -3.913 -7.806 1 19.34 ? C17 Y7W 701 A 1 HETATM 11 C C21 Y7W . . . B 2 -20.518 -2.336 -4.422 1 21.43 ? C21 Y7W 701 A 1 HETATM 12 C C24 Y7W . . . B 2 -24.357 1.586 -1.695 1 17.95 ? C24 Y7W 701 A 1 HETATM 13 C C28 Y7W . . . B 2 -25.423 6.838 -0.531 1 19.64 ? C28 Y7W 701 A 1 HETATM 14 O O1 Y7W . . . B 2 -21.193 3.273 2.684 1 17.91 ? O1 Y7W 701 A 1 HETATM 15 C C2 Y7W . . . B 2 -21.81 2.756 1.745 1 16.54 ? C2 Y7W 701 A 1 HETATM 16 C C9 Y7W . . . B 2 -24.797 -0.773 -1.513 1 17.72 ? C9 Y7W 701 A 1 HETATM 17 N N11 Y7W . . . B 2 -24.32 -2.402 -3.301 1 19.13 ? N11 Y7W 701 A 1 HETATM 18 C C12 Y7W . . . B 2 -24.841 -2.836 -4.448 1 21.59 ? C12 Y7W 701 A 1 HETATM 19 C C14 Y7W . . . B 2 -24.539 -3.705 -6.688 1 20.59 ? C14 Y7W 701 A 1 HETATM 20 F F16 Y7W . . . B 2 -24.376 -4.523 -8.882 1 23.87 ? F16 Y7W 701 A 1 HETATM 21 C C18 Y7W . . . B 2 -21.771 -3.401 -6.695 1 18.26 ? C18 Y7W 701 A 1 HETATM 22 C C19 Y7W . . . B 2 -22.512 -3.031 -5.574 1 19.54 ? C19 Y7W 701 A 1 HETATM 23 O O20 Y7W . . . B 2 -21.945 -2.53 -4.433 1 20.45 ? O20 Y7W 701 A 1 HETATM 24 O O22 Y7W . . . B 2 -26.061 -2.93 -4.603 1 24.16 ? O22 Y7W 701 A 1 HETATM 25 C C23 Y7W . . . B 2 -24.614 0.363 -2.279 1 17.74 ? C23 Y7W 701 A 1 HETATM 26 N N25 Y7W . . . B 2 -24.899 3.994 0.106 1 17.26 ? N25 Y7W 701 A 1 HETATM 27 N N26 Y7W . . . B 2 -24.482 5.047 0.899 1 17.71 ? N26 Y7W 701 A 1 HETATM 28 C C27 Y7W . . . B 2 -25.212 6.315 0.888 1 18.98 ? C27 Y7W 701 A 1 HETATM 29 C C29 Y7W . . . B 2 -26.516 6.155 1.631 1 21.07 ? C29 Y7W 701 A 1 HETATM 30 F F30 Y7W . . . B 2 -26.324 5.571 2.807 1 22.52 ? F30 Y7W 701 A 1 HETATM 31 F F31 Y7W . . . B 2 -27.081 7.341 1.876 1 22.18 ? F31 Y7W 701 A 1 HETATM 32 F F32 Y7W . . . B 2 -27.4 5.4 0.985 1 22.68 ? F32 Y7W 701 A 1 HETATM 33 C C33 Y7W . . . B 2 -23.37 4.737 1.592 1 17.51 ? C33 Y7W 701 A 1 HETATM 34 N N34 Y7W . . . B 2 -22.683 5.616 2.384 1 18.55 ? N34 Y7W 701 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #