data_8FMJ # _model_server_result.job_id 9FPUGjmqgz7OTlRGKMuaaw _model_server_result.datetime_utc '2024-11-22 19:30:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8FMJ # _exptl.entry_id 8FMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FMJ _cell.length_a 92.516 _cell.length_b 92.516 _cell.length_c 117.775 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 24 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 B MG MG . A MG 201 1_555 F O2B GDP . A GDP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 B MG MG . A MG 201 1_555 G O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc4 B MG MG . A MG 201 1_555 G O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc5 B MG MG . A MG 201 1_555 G O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc6 B MG MG . A MG 201 1_555 G O HOH . A HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 8FMJ _atom_sites.fract_transf_matrix[1][1] 0.010809 _atom_sites.fract_transf_matrix[1][2] 0.006241 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 202 MG MG . C 3 GOL A 1 202 203 GOL GOL . D 4 TRS A 1 203 204 TRS TRS . E 5 PEG A 1 204 205 PEG PEG . F 6 GDP A 1 205 201 GDP GDP . G 7 HOH A 1 301 202 HOH HOH . G 7 HOH A 2 302 38 HOH HOH . G 7 HOH A 3 303 199 HOH HOH . G 7 HOH A 4 304 147 HOH HOH . G 7 HOH A 5 305 174 HOH HOH . G 7 HOH A 6 306 29 HOH HOH . G 7 HOH A 7 307 157 HOH HOH . G 7 HOH A 8 308 188 HOH HOH . G 7 HOH A 9 309 166 HOH HOH . G 7 HOH A 10 310 56 HOH HOH . G 7 HOH A 11 311 186 HOH HOH . G 7 HOH A 12 312 111 HOH HOH . G 7 HOH A 13 313 79 HOH HOH . G 7 HOH A 14 314 74 HOH HOH . G 7 HOH A 15 315 30 HOH HOH . G 7 HOH A 16 316 57 HOH HOH . G 7 HOH A 17 317 138 HOH HOH . G 7 HOH A 18 318 62 HOH HOH . G 7 HOH A 19 319 58 HOH HOH . G 7 HOH A 20 320 78 HOH HOH . G 7 HOH A 21 321 40 HOH HOH . G 7 HOH A 22 322 7 HOH HOH . G 7 HOH A 23 323 123 HOH HOH . G 7 HOH A 24 324 82 HOH HOH . G 7 HOH A 25 325 45 HOH HOH . G 7 HOH A 26 326 140 HOH HOH . G 7 HOH A 27 327 198 HOH HOH . G 7 HOH A 28 328 151 HOH HOH . G 7 HOH A 29 329 68 HOH HOH . G 7 HOH A 30 330 73 HOH HOH . G 7 HOH A 31 331 60 HOH HOH . G 7 HOH A 32 332 20 HOH HOH . G 7 HOH A 33 333 99 HOH HOH . G 7 HOH A 34 334 96 HOH HOH . G 7 HOH A 35 335 193 HOH HOH . G 7 HOH A 36 336 6 HOH HOH . G 7 HOH A 37 337 86 HOH HOH . G 7 HOH A 38 338 28 HOH HOH . G 7 HOH A 39 339 165 HOH HOH . G 7 HOH A 40 340 11 HOH HOH . G 7 HOH A 41 341 33 HOH HOH . G 7 HOH A 42 342 187 HOH HOH . G 7 HOH A 43 343 90 HOH HOH . G 7 HOH A 44 344 25 HOH HOH . G 7 HOH A 45 345 116 HOH HOH . G 7 HOH A 46 346 127 HOH HOH . G 7 HOH A 47 347 70 HOH HOH . G 7 HOH A 48 348 2 HOH HOH . G 7 HOH A 49 349 145 HOH HOH . G 7 HOH A 50 350 107 HOH HOH . G 7 HOH A 51 351 9 HOH HOH . G 7 HOH A 52 352 35 HOH HOH . G 7 HOH A 53 353 170 HOH HOH . G 7 HOH A 54 354 139 HOH HOH . G 7 HOH A 55 355 173 HOH HOH . G 7 HOH A 56 356 97 HOH HOH . G 7 HOH A 57 357 39 HOH HOH . G 7 HOH A 58 358 32 HOH HOH . G 7 HOH A 59 359 55 HOH HOH . G 7 HOH A 60 360 88 HOH HOH . G 7 HOH A 61 361 161 HOH HOH . G 7 HOH A 62 362 51 HOH HOH . G 7 HOH A 63 363 34 HOH HOH . G 7 HOH A 64 364 54 HOH HOH . G 7 HOH A 65 365 131 HOH HOH . G 7 HOH A 66 366 180 HOH HOH . G 7 HOH A 67 367 3 HOH HOH . G 7 HOH A 68 368 18 HOH HOH . G 7 HOH A 69 369 77 HOH HOH . G 7 HOH A 70 370 66 HOH HOH . G 7 HOH A 71 371 196 HOH HOH . G 7 HOH A 72 372 5 HOH HOH . G 7 HOH A 73 373 102 HOH HOH . G 7 HOH A 74 374 23 HOH HOH . G 7 HOH A 75 375 104 HOH HOH . G 7 HOH A 76 376 95 HOH HOH . G 7 HOH A 77 377 67 HOH HOH . G 7 HOH A 78 378 8 HOH HOH . G 7 HOH A 79 379 101 HOH HOH . G 7 HOH A 80 380 13 HOH HOH . G 7 HOH A 81 381 94 HOH HOH . G 7 HOH A 82 382 100 HOH HOH . G 7 HOH A 83 383 4 HOH HOH . G 7 HOH A 84 384 44 HOH HOH . G 7 HOH A 85 385 19 HOH HOH . G 7 HOH A 86 386 1 HOH HOH . G 7 HOH A 87 387 91 HOH HOH . G 7 HOH A 88 388 156 HOH HOH . G 7 HOH A 89 389 148 HOH HOH . G 7 HOH A 90 390 175 HOH HOH . G 7 HOH A 91 391 72 HOH HOH . G 7 HOH A 92 392 87 HOH HOH . G 7 HOH A 93 393 47 HOH HOH . G 7 HOH A 94 394 46 HOH HOH . G 7 HOH A 95 395 89 HOH HOH . G 7 HOH A 96 396 112 HOH HOH . G 7 HOH A 97 397 83 HOH HOH . G 7 HOH A 98 398 61 HOH HOH . G 7 HOH A 99 399 24 HOH HOH . G 7 HOH A 100 400 17 HOH HOH . G 7 HOH A 101 401 12 HOH HOH . G 7 HOH A 102 402 76 HOH HOH . G 7 HOH A 103 403 85 HOH HOH . G 7 HOH A 104 404 15 HOH HOH . G 7 HOH A 105 405 177 HOH HOH . G 7 HOH A 106 406 21 HOH HOH . G 7 HOH A 107 407 113 HOH HOH . G 7 HOH A 108 408 195 HOH HOH . G 7 HOH A 109 409 149 HOH HOH . G 7 HOH A 110 410 64 HOH HOH . G 7 HOH A 111 411 103 HOH HOH . G 7 HOH A 112 412 71 HOH HOH . G 7 HOH A 113 413 136 HOH HOH . G 7 HOH A 114 414 65 HOH HOH . G 7 HOH A 115 415 10 HOH HOH . G 7 HOH A 116 416 152 HOH HOH . G 7 HOH A 117 417 22 HOH HOH . G 7 HOH A 118 418 69 HOH HOH . G 7 HOH A 119 419 133 HOH HOH . G 7 HOH A 120 420 26 HOH HOH . G 7 HOH A 121 421 43 HOH HOH . G 7 HOH A 122 422 81 HOH HOH . G 7 HOH A 123 423 144 HOH HOH . G 7 HOH A 124 424 49 HOH HOH . G 7 HOH A 125 425 114 HOH HOH . G 7 HOH A 126 426 41 HOH HOH . G 7 HOH A 127 427 14 HOH HOH . G 7 HOH A 128 428 108 HOH HOH . G 7 HOH A 129 429 167 HOH HOH . G 7 HOH A 130 430 36 HOH HOH . G 7 HOH A 131 431 92 HOH HOH . G 7 HOH A 132 432 80 HOH HOH . G 7 HOH A 133 433 171 HOH HOH . G 7 HOH A 134 434 117 HOH HOH . G 7 HOH A 135 435 63 HOH HOH . G 7 HOH A 136 436 118 HOH HOH . G 7 HOH A 137 437 126 HOH HOH . G 7 HOH A 138 438 163 HOH HOH . G 7 HOH A 139 439 119 HOH HOH . G 7 HOH A 140 440 27 HOH HOH . G 7 HOH A 141 441 197 HOH HOH . G 7 HOH A 142 442 42 HOH HOH . G 7 HOH A 143 443 201 HOH HOH . G 7 HOH A 144 444 135 HOH HOH . G 7 HOH A 145 445 162 HOH HOH . G 7 HOH A 146 446 59 HOH HOH . G 7 HOH A 147 447 146 HOH HOH . G 7 HOH A 148 448 48 HOH HOH . G 7 HOH A 149 449 52 HOH HOH . G 7 HOH A 150 450 121 HOH HOH . G 7 HOH A 151 451 185 HOH HOH . G 7 HOH A 152 452 93 HOH HOH . G 7 HOH A 153 453 53 HOH HOH . G 7 HOH A 154 454 158 HOH HOH . G 7 HOH A 155 455 132 HOH HOH . G 7 HOH A 156 456 84 HOH HOH . G 7 HOH A 157 457 172 HOH HOH . G 7 HOH A 158 458 159 HOH HOH . G 7 HOH A 159 459 98 HOH HOH . G 7 HOH A 160 460 125 HOH HOH . G 7 HOH A 161 461 194 HOH HOH . G 7 HOH A 162 462 192 HOH HOH . G 7 HOH A 163 463 134 HOH HOH . G 7 HOH A 164 464 110 HOH HOH . G 7 HOH A 165 465 75 HOH HOH . G 7 HOH A 166 466 178 HOH HOH . G 7 HOH A 167 467 190 HOH HOH . G 7 HOH A 168 468 50 HOH HOH . G 7 HOH A 169 469 124 HOH HOH . G 7 HOH A 170 470 122 HOH HOH . G 7 HOH A 171 471 143 HOH HOH . G 7 HOH A 172 472 128 HOH HOH . G 7 HOH A 173 473 191 HOH HOH . G 7 HOH A 174 474 137 HOH HOH . G 7 HOH A 175 475 109 HOH HOH . G 7 HOH A 176 476 176 HOH HOH . G 7 HOH A 177 477 164 HOH HOH . G 7 HOH A 178 478 150 HOH HOH . G 7 HOH A 179 479 130 HOH HOH . G 7 HOH A 180 480 183 HOH HOH . G 7 HOH A 181 481 160 HOH HOH . G 7 HOH A 182 482 129 HOH HOH . G 7 HOH A 183 483 115 HOH HOH . G 7 HOH A 184 484 154 HOH HOH . G 7 HOH A 185 485 189 HOH HOH . G 7 HOH A 186 486 16 HOH HOH . G 7 HOH A 187 487 182 HOH HOH . G 7 HOH A 188 488 106 HOH HOH . G 7 HOH A 189 489 120 HOH HOH . G 7 HOH A 190 490 155 HOH HOH . G 7 HOH A 191 491 169 HOH HOH . G 7 HOH A 192 492 200 HOH HOH . G 7 HOH A 193 493 168 HOH HOH . G 7 HOH A 194 494 31 HOH HOH . G 7 HOH A 195 495 153 HOH HOH . G 7 HOH A 196 496 142 HOH HOH . G 7 HOH A 197 497 184 HOH HOH . G 7 HOH A 198 498 37 HOH HOH . G 7 HOH A 199 499 181 HOH HOH . G 7 HOH A 200 500 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 14.906 -8.984 11.001 1 28.35 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 3 14.123 -7.856 11.379 1 27.53 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 3 16.201 -8.479 10.303 1 29.37 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 3 16.996 -7.746 11.159 1 30.36 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 3 16.944 -9.76 9.783 1 29.32 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 3 17.296 -10.589 10.897 1 29.53 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . C 3 14.432 -9.574 10.394 1 34.05 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . C 3 15.154 -9.53 11.763 1 34.05 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . C 3 13.58 -8.123 11.975 1 33.05 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . C 3 15.966 -7.895 9.565 1 35.27 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . C 3 17.672 -7.476 10.72 1 36.46 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . C 3 17.715 -9.474 9.268 1 35.2 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . C 3 16.364 -10.209 9.148 1 35.2 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . C 3 16.588 -10.985 11.148 1 35.46 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #