data_8FMV
#
_model_server_result.job_id            9aT3hDwshvXTzeKLuQdRAA 
_model_server_result.datetime_utc      '2025-01-18 09:35:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":609}' 
#
_entry.id    8FMV 
#
_exptl.entry_id    8FMV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FMV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 O N N 
? 4 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 O O3G ATP . D ATP 713 1_555 P MG MG . D MG 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc2 O O1B ATP . D ATP 713 1_555 P MG MG . D MG 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 O O3B ATP . D ATP 713 1_555 P MG MG . D MG 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc4 O O3A ATP . D ATP 713 1_555 P MG MG . D MG 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8FMV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 POV D 1 701 1 POV POV . 
D 3 POV D 1 702 2 POV POV . 
E 3 POV D 1 703 3 POV POV . 
F 3 POV D 1 704 4 POV POV . 
G 3 POV D 1 705 7 POV POV . 
H 3 POV D 1 706 8 POV POV . 
I 3 POV D 1 707 14 POV POV . 
J 3 POV D 1 708 15 POV POV . 
K 3 POV D 1 709 16 POV POV . 
L 3 POV D 1 710 17 POV POV . 
M 3 POV D 1 711 18 POV POV . 
N 3 POV D 1 712 20 POV POV . 
O 4 ATP D 1 713 1 ATP ATP . 
P 5 MG D 1 714 1 MG MG . 
Q 3 POV C 1 601 5 POV POV . 
R 3 POV C 1 602 6 POV POV . 
S 3 POV C 1 603 9 POV POV . 
T 3 POV C 1 604 10 POV POV . 
U 3 POV C 1 605 11 POV POV . 
V 3 POV C 1 606 12 POV POV . 
W 3 POV C 1 607 13 POV POV . 
X 3 POV C 1 608 19 POV POV . 
Y 4 ATP C 1 609 2 ATP ATP . 
Z 6 HT1 C 1 610 3 HT1 HT1 . 
AA 6 HT1 C 1 611 4 HT1 HT1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Y 4 163.057 155.224 119.619 1 133.06 ? PG ATP 609 C 1 
HETATM 2 O O1G ATP . . . Y 4 162.583 154.803 120.977 1 130.67 ? O1G ATP 609 C 1 
HETATM 3 O O2G ATP . . . Y 4 164.258 154.469 119.146 1 132.61 ? O2G ATP 609 C 1 
HETATM 4 O O3G ATP . . . Y 4 163.173 156.715 119.452 1 130.89 ? O3G ATP 609 C 1 
HETATM 5 P PB ATP . . . Y 4 160.375 154.942 119.193 1 130.96 ? PB ATP 609 C 1 
HETATM 6 O O1B ATP . . . Y 4 159.476 154.679 118.061 1 132.71 ? O1B ATP 609 C 1 
HETATM 7 O O2B ATP . . . Y 4 160.307 156.221 119.943 1 131.39 ? O2B ATP 609 C 1 
HETATM 8 O O3B ATP . . . Y 4 161.867 154.793 118.681 1 132.95 ? O3B ATP 609 C 1 
HETATM 9 P PA ATP . . . Y 4 159.757 153.813 121.759 1 136.03 ? PA ATP 609 C 1 
HETATM 10 O O1A ATP . . . Y 4 160.311 152.645 122.495 1 133.48 ? O1A ATP 609 C 1 
HETATM 11 O O2A ATP . . . Y 4 160.019 155.163 122.336 1 132.43 ? O2A ATP 609 C 1 
HETATM 12 O O3A ATP . . . Y 4 160.264 153.757 120.248 1 131.3 ? O3A ATP 609 C 1 
HETATM 13 O O5' ATP . . . Y 4 158.191 153.617 121.535 1 134.54 ? O5' ATP 609 C 1 
HETATM 14 C C5' ATP . . . Y 4 157.431 154.747 121.063 1 132.99 ? C5' ATP 609 C 1 
HETATM 15 C C4' ATP . . . Y 4 156.351 155.049 122.065 1 133.14 ? C4' ATP 609 C 1 
HETATM 16 O O4' ATP . . . Y 4 156.742 154.536 123.355 1 133.53 ? O4' ATP 609 C 1 
HETATM 17 C C3' ATP . . . Y 4 156.075 156.514 122.393 1 132.85 ? C3' ATP 609 C 1 
HETATM 18 O O3' ATP . . . Y 4 155.331 157.161 121.369 1 132.84 ? O3' ATP 609 C 1 
HETATM 19 C C2' ATP . . . Y 4 155.278 156.358 123.691 1 132.72 ? C2' ATP 609 C 1 
HETATM 20 O O2' ATP . . . Y 4 153.908 156.132 123.454 1 132.99 ? O2' ATP 609 C 1 
HETATM 21 C C1' ATP . . . Y 4 155.897 155.111 124.322 1 132.9 ? C1' ATP 609 C 1 
HETATM 22 N N9 ATP . . . Y 4 156.696 155.391 125.484 1 130.87 ? N9 ATP 609 C 1 
HETATM 23 C C8 ATP . . . Y 4 158.053 155.513 125.547 1 130.4 ? C8 ATP 609 C 1 
HETATM 24 N N7 ATP . . . Y 4 158.476 155.799 126.754 1 131.08 ? N7 ATP 609 C 1 
HETATM 25 C C5 ATP . . . Y 4 157.321 155.885 127.519 1 132.55 ? C5 ATP 609 C 1 
HETATM 26 C C6 ATP . . . Y 4 157.1 156.16 128.88 1 133.19 ? C6 ATP 609 C 1 
HETATM 27 N N6 ATP . . . Y 4 158.074 156.414 129.748 1 131.56 ? N6 ATP 609 C 1 
HETATM 28 N N1 ATP . . . Y 4 155.817 156.166 129.312 1 132.8 ? N1 ATP 609 C 1 
HETATM 29 C C2 ATP . . . Y 4 154.843 155.911 128.428 1 132.51 ? C2 ATP 609 C 1 
HETATM 30 N N3 ATP . . . Y 4 154.933 155.633 127.13 1 131.74 ? N3 ATP 609 C 1 
HETATM 31 C C4 ATP . . . Y 4 156.216 155.641 126.738 1 131.49 ? C4 ATP 609 C 1 
HETATM 32 H "H5'1" ATP . . . Y 4 158.08 155.612 120.934 1 132.99 ? "H5'1" ATP 609 C 1 
HETATM 33 H "H5'2" ATP . . . Y 4 156.994 154.529 120.09 1 132.99 ? "H5'2" ATP 609 C 1 
HETATM 34 H H4' ATP . . . Y 4 155.476 154.613 121.586 1 133.14 ? H4' ATP 609 C 1 
HETATM 35 H H3' ATP . . . Y 4 156.963 157.138 122.483 1 132.85 ? H3' ATP 609 C 1 
HETATM 36 H HO3' ATP . . . Y 4 155.178 158.086 121.616 1 132.85 ? HO3' ATP 609 C 1 
HETATM 37 H H2' ATP . . . Y 4 155.326 157.254 124.309 1 132.72 ? H2' ATP 609 C 1 
HETATM 38 H HO2' ATP . . . Y 4 153.444 156.04 124.301 1 132.72 ? HO2' ATP 609 C 1 
HETATM 39 H H1' ATP . . . Y 4 155.084 154.459 124.638 1 132.9 ? H1' ATP 609 C 1 
HETATM 40 H H8 ATP . . . Y 4 158.708 155.388 124.695 1 130.4 ? H8 ATP 609 C 1 
HETATM 41 H HN61 ATP . . . Y 4 157.851 156.606 130.72 1 131.56 ? HN61 ATP 609 C 1 
HETATM 42 H HN62 ATP . . . Y 4 159.042 156.416 129.439 1 131.56 ? HN62 ATP 609 C 1 
HETATM 43 H H2 ATP . . . Y 4 153.838 155.935 128.828 1 132.51 ? H2 ATP 609 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    91 
_model_server_stats.query_time_ms           538 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#