data_8FOA
#
_model_server_result.job_id            P0hrplvTQP6VxrLMsXwoJA 
_model_server_result.datetime_utc      '2024-11-04 23:15:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8foa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EB","auth_seq_id":813}' 
#
_entry.id    8FOA 
#
_exptl.entry_id    8FOA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              270.237 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GENISTEIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FOA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FOA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 T N N 
? 6 EB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 S CA CA . A CA 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc2 A OD2 ASP 542 A ASP 542 1_555 S CA CA . A CA 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc3 A NE2 HIS 582 A HIS 582 1_555 R ZN ZN . A ZN 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc4 A NE2 HIS 587 A HIS 587 1_555 R ZN ZN . A ZN 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc5 R ZN ZN . A ZN 814 1_555 D NE2 HIS 587 D HIS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc6 S CA CA . A CA 815 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc7 S CA CA . A CA 815 1_555 B OD2 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc8 S CA CA . A CA 815 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc9 S CA CA . A CA 815 1_555 C OD2 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc10 S CA CA . A CA 815 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc11 S CA CA . A CA 815 1_555 D OD2 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc12 B NE2 HIS 587 B HIS 587 1_555 RA ZN ZN . C ZN 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc13 C NE2 HIS 582 C HIS 582 1_555 RA ZN ZN . C ZN 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc14 C NE2 HIS 587 C HIS 587 1_555 RA ZN ZN . C ZN 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
#
_chem_comp.formula           'C15 H10 O5' 
_chem_comp.formula_weight    270.237 
_chem_comp.id                GEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GENISTEIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "5,7-DIHYDROXY-3-(4-HYDROXYPHENYL)-4H-1-BENZOPYRAN-4-ONE;4',5,7-TRIHYDROXYISOFLAVONE;PRUNETOL;GENISTEOL" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GEN doub 83 n y 
C1 C10 GEN sing 84 n y 
C1 H1 GEN sing 85 n n 
C2 O2 GEN sing 86 n n 
C2 C3 GEN sing 87 n y 
O2 H2 GEN sing 88 n n 
C3 C4 GEN doub 89 n y 
C3 H3 GEN sing 90 n n 
C4 O4 GEN sing 91 n n 
C4 C5 GEN sing 92 n y 
O4 H4 GEN sing 93 n n 
C5 C6 GEN sing 94 n y 
C5 C10 GEN doub 95 n y 
C6 O6 GEN doub 96 n n 
C6 C7 GEN sing 97 n y 
C7 C8 GEN doub 98 n y 
C7 C11 GEN sing 99 n y 
C8 O9 GEN sing 100 n y 
C8 H8 GEN sing 101 n n 
O9 C10 GEN sing 102 n y 
C11 C12 GEN doub 103 n y 
C11 C16 GEN sing 104 n y 
C12 C13 GEN sing 105 n y 
C12 H12 GEN sing 106 n n 
C13 C14 GEN doub 107 n y 
C13 H13 GEN sing 108 n n 
C14 O14 GEN sing 109 n n 
C14 C15 GEN sing 110 n y 
O14 H14 GEN sing 111 n n 
C15 C16 GEN doub 112 n y 
C15 H15 GEN sing 113 n n 
C16 H16 GEN sing 114 n n 
#
_atom_sites.entry_id                     8FOA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 801 801 Y01 Y01 . 
F 2 Y01 A 1 802 802 Y01 Y01 . 
G 2 Y01 A 1 803 803 Y01 Y01 . 
H 3 POV A 1 804 806 POV POV . 
I 3 POV A 1 805 807 POV POV . 
J 3 POV A 1 806 808 POV POV . 
K 3 POV A 1 807 809 POV POV . 
L 3 POV A 1 808 811 POV POV . 
M 3 POV A 1 809 812 POV POV . 
N 3 POV A 1 810 805 POV POV . 
O 3 POV A 1 811 810 POV POV . 
P 2 Y01 A 1 812 803 Y01 Y01 . 
Q 3 POV A 1 813 804 POV POV . 
R 4 ZN A 1 814 2 ZN ZN . 
S 5 CA A 1 815 901 CA CA . 
T 6 GEN A 1 816 902 GEN GEN . 
U 3 POV B 1 801 804 POV POV . 
V 2 Y01 B 1 802 801 Y01 Y01 . 
W 2 Y01 B 1 803 802 Y01 Y01 . 
X 2 Y01 B 1 804 803 Y01 Y01 . 
Y 3 POV B 1 805 806 POV POV . 
Z 3 POV B 1 806 807 POV POV . 
AA 3 POV B 1 807 808 POV POV . 
BA 3 POV B 1 808 809 POV POV . 
CA 3 POV B 1 809 811 POV POV . 
DA 3 POV B 1 810 812 POV POV . 
EA 3 POV B 1 811 805 POV POV . 
FA 3 POV B 1 812 807 POV POV . 
GA 3 POV B 1 813 810 POV POV . 
HA 3 POV C 1 801 804 POV POV . 
IA 2 Y01 C 1 802 801 Y01 Y01 . 
JA 2 Y01 C 1 803 802 Y01 Y01 . 
KA 2 Y01 C 1 804 803 Y01 Y01 . 
LA 3 POV C 1 805 806 POV POV . 
MA 3 POV C 1 806 808 POV POV . 
NA 3 POV C 1 807 809 POV POV . 
OA 3 POV C 1 808 811 POV POV . 
PA 3 POV C 1 809 812 POV POV . 
QA 3 POV C 1 810 810 POV POV . 
RA 4 ZN C 1 811 1 ZN ZN . 
SA 3 POV D 1 801 805 POV POV . 
TA 3 POV D 1 802 810 POV POV . 
UA 3 POV D 1 803 804 POV POV . 
VA 2 Y01 D 1 804 801 Y01 Y01 . 
WA 2 Y01 D 1 805 802 Y01 Y01 . 
XA 3 POV D 1 806 805 POV POV . 
YA 3 POV D 1 807 806 POV POV . 
ZA 3 POV D 1 808 807 POV POV . 
AB 3 POV D 1 809 808 POV POV . 
BB 3 POV D 1 810 809 POV POV . 
CB 3 POV D 1 811 811 POV POV . 
DB 3 POV D 1 812 812 POV POV . 
EB 6 GEN D 1 813 903 GEN GEN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GEN . . . EB 6 110.252 107.781 108.407 1 69.61 ? C1 GEN 813 D 1 
HETATM 2 C C2 GEN . . . EB 6 110.913 108.951 108.474 1 69.61 ? C2 GEN 813 D 1 
HETATM 3 O O2 GEN . . . EB 6 112.327 108.97 108.47 1 69.61 ? O2 GEN 813 D 1 
HETATM 4 C C3 GEN . . . EB 6 110.207 110.158 108.552 1 69.61 ? C3 GEN 813 D 1 
HETATM 5 C C4 GEN . . . EB 6 108.837 110.147 108.555 1 69.61 ? C4 GEN 813 D 1 
HETATM 6 O O4 GEN . . . EB 6 108.159 111.31 108.626 1 69.61 ? O4 GEN 813 D 1 
HETATM 7 C C5 GEN . . . EB 6 108.136 108.911 108.485 1 69.61 ? C5 GEN 813 D 1 
HETATM 8 C C6 GEN . . . EB 6 106.733 108.872 108.489 1 69.61 ? C6 GEN 813 D 1 
HETATM 9 O O6 GEN . . . EB 6 105.996 110.039 108.563 1 69.61 ? O6 GEN 813 D 1 
HETATM 10 C C7 GEN . . . EB 6 106.101 107.52 108.411 1 69.61 ? C7 GEN 813 D 1 
HETATM 11 C C8 GEN . . . EB 6 106.897 106.448 108.346 1 69.61 ? C8 GEN 813 D 1 
HETATM 12 O O9 GEN . . . EB 6 108.167 106.547 108.342 1 69.61 ? O9 GEN 813 D 1 
HETATM 13 C C10 GEN . . . EB 6 108.821 107.764 108.413 1 69.61 ? C10 GEN 813 D 1 
HETATM 14 C C11 GEN . . . EB 6 104.578 107.316 108.394 1 69.61 ? C11 GEN 813 D 1 
HETATM 15 C C12 GEN . . . EB 6 103.795 108.068 107.54 1 69.61 ? C12 GEN 813 D 1 
HETATM 16 C C13 GEN . . . EB 6 102.409 107.898 107.501 1 69.61 ? C13 GEN 813 D 1 
HETATM 17 C C14 GEN . . . EB 6 101.838 106.97 108.297 1 69.61 ? C14 GEN 813 D 1 
HETATM 18 O O14 GEN . . . EB 6 100.421 106.789 108.252 1 69.61 ? O14 GEN 813 D 1 
HETATM 19 C C15 GEN . . . EB 6 102.641 106.183 109.167 1 69.61 ? C15 GEN 813 D 1 
HETATM 20 C C16 GEN . . . EB 6 103.984 106.354 109.207 1 69.61 ? C16 GEN 813 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#