data_8FOL # _model_server_result.job_id Unjh4BBezkY4GehaYMkEGg _model_server_result.datetime_utc '2024-10-20 03:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8FOL # _exptl.entry_id 8FOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FOL _cell.length_a 49.653 _cell.length_b 59.011 _cell.length_c 96.792 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 29 A CYS 29 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A SG CYS 33 A CYS 33 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 A SG CYS 36 A CYS 36 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 A OD1 ASP 104 A ASP 104 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc5 A O THR 105 A THR 105 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.378 ? metalc ? metalc6 A O MET 127 A MET 127 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc7 A OD1 ASP 129 A ASP 129 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc8 B FE2 SF4 . A SF4 301 1_555 C N SAM . A SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc9 B FE2 SF4 . A SF4 301 1_555 C O SAM . A SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc10 C OXT SAM . A SAM 302 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 8FOL _atom_sites.fract_transf_matrix[1][1] 0.02014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 500 SF4 SF4 . C 3 SAM A 1 302 501 SAM SAM . D 4 K A 1 303 502 K K . E 5 CL A 1 304 1 CL CL . F 5 CL A 1 305 2 CL CL . G 5 CL A 1 306 3 CL CL . H 6 HOH A 1 401 6 HOH HOH . H 6 HOH A 2 402 2 HOH HOH . H 6 HOH A 3 403 1 HOH HOH . H 6 HOH A 4 404 10 HOH HOH . H 6 HOH A 5 405 3 HOH HOH . H 6 HOH A 6 406 4 HOH HOH . H 6 HOH A 7 407 15 HOH HOH . H 6 HOH A 8 408 13 HOH HOH . H 6 HOH A 9 409 17 HOH HOH . H 6 HOH A 10 410 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 50.141 66.699 21.631 1 53.99 ? N SAM 302 A 1 HETATM 2 C CA SAM . . . C 3 51.34 66.058 21.13 1 55.91 ? CA SAM 302 A 1 HETATM 3 C C SAM . . . C 3 51.24 65.887 19.615 1 63.15 ? C SAM 302 A 1 HETATM 4 O O SAM . . . C 3 50.121 65.715 19.061 1 58.75 ? O SAM 302 A 1 HETATM 5 O OXT SAM . . . C 3 52.284 65.917 18.913 1 67.7 ? OXT SAM 302 A 1 HETATM 6 C CB SAM . . . C 3 51.554 64.699 21.808 1 63.06 ? CB SAM 302 A 1 HETATM 7 C CG SAM . . . C 3 50.218 64.088 22.251 1 64.41 ? CG SAM 302 A 1 HETATM 8 S SD SAM . . . C 3 49.5 63.166 20.966 1 78.59 ? SD SAM 302 A 1 HETATM 9 C CE SAM . . . C 3 47.806 62.978 21.292 1 64.31 ? CE SAM 302 A 1 HETATM 10 C C5' SAM . . . C 3 50.28 61.651 20.817 1 73.14 ? C5' SAM 302 A 1 HETATM 11 C C4' SAM . . . C 3 50.368 61.121 19.344 1 63.76 ? C4' SAM 302 A 1 HETATM 12 O O4' SAM . . . C 3 49.093 60.535 18.878 1 62.97 ? O4' SAM 302 A 1 HETATM 13 C C3' SAM . . . C 3 50.741 62.223 18.325 1 68.58 ? C3' SAM 302 A 1 HETATM 14 O O3' SAM . . . C 3 51.709 61.716 17.378 1 63.47 ? O3' SAM 302 A 1 HETATM 15 C C2' SAM . . . C 3 49.411 62.471 17.621 1 67.68 ? C2' SAM 302 A 1 HETATM 16 O O2' SAM . . . C 3 49.613 63.051 16.31 1 68.33 ? O2' SAM 302 A 1 HETATM 17 C C1' SAM . . . C 3 48.884 61.029 17.516 1 66.2 ? C1' SAM 302 A 1 HETATM 18 N N9 SAM . . . C 3 47.468 61.014 17.196 1 66.44 ? N9 SAM 302 A 1 HETATM 19 C C8 SAM . . . C 3 46.515 61.817 17.686 1 62.98 ? C8 SAM 302 A 1 HETATM 20 N N7 SAM . . . C 3 45.352 61.465 17.134 1 60.19 ? N7 SAM 302 A 1 HETATM 21 C C5 SAM . . . C 3 45.579 60.44 16.298 1 60.67 ? C5 SAM 302 A 1 HETATM 22 C C6 SAM . . . C 3 44.742 59.704 15.483 1 66.38 ? C6 SAM 302 A 1 HETATM 23 N N6 SAM . . . C 3 43.321 60.003 15.44 1 55.86 ? N6 SAM 302 A 1 HETATM 24 N N1 SAM . . . C 3 45.237 58.727 14.744 1 62.77 ? N1 SAM 302 A 1 HETATM 25 C C2 SAM . . . C 3 46.562 58.45 14.784 1 60 ? C2 SAM 302 A 1 HETATM 26 N N3 SAM . . . C 3 47.384 59.166 15.581 1 56.24 ? N3 SAM 302 A 1 HETATM 27 C C4 SAM . . . C 3 46.887 60.163 16.335 1 58.33 ? C4 SAM 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #