data_8FP1 # _model_server_result.job_id A8fnCwOII401MhVId7YaIw _model_server_result.datetime_utc '2024-11-23 03:51:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9000}' # _entry.id 8FP1 # _exptl.entry_id 8FP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.911 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3P)-3-[6-chloro-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undecan-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FP1 _cell.length_a 52.34 _cell.length_b 78.07 _cell.length_c 93.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 182 A ALA 512 1_555 A N TPO 183 A TPO 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 183 A TPO 513 1_555 A N PHE 184 A PHE 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 A C LEU 325 A LEU 655 1_555 A N TPO 326 A TPO 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C TPO 326 A TPO 656 1_555 A N PRO 327 A PRO 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C22 H23 Cl N6 O' _chem_comp.formula_weight 422.911 _chem_comp.id XXF _chem_comp.mon_nstd_flag . _chem_comp.name (3P)-3-[6-chloro-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undecan-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 XXF doub 397 n y N2 C2 XXF sing 398 n y C1 N1 XXF sing 399 n y C2 N5 XXF sing 400 n y C2 C3 XXF doub 401 n y N1 C4 XXF doub 402 n y N5 C15 XXF sing 403 n y C3 C4 XXF sing 404 n y C3 C14 XXF sing 405 n y C4 N3 XXF sing 406 n n C15 CL1 XXF sing 407 n n C15 C14 XXF doub 408 n y C14 C16 XXF sing 409 n n C8 N3 XXF sing 410 n n C8 C7 XXF sing 411 n n N3 C5 XXF sing 412 n n C5 C6 XXF sing 413 n n C12 C7 XXF sing 414 n n C12 C11 XXF sing 415 n n C16 C21 XXF doub 416 n y C16 C17 XXF sing 417 n y C7 C9 XXF sing 418 n n C7 O1 XXF sing 419 n n C21 C20 XXF sing 420 n y C9 C10 XXF sing 421 n n C17 C18 XXF doub 422 n y O1 C6 XXF sing 423 n n C11 N4 XXF sing 424 n n N4 C10 XXF sing 425 n n N4 C13 XXF sing 426 n n C20 C19 XXF doub 427 n y C18 C19 XXF sing 428 n y C18 C22 XXF sing 429 n n C22 N6 XXF trip 430 n n C8 H1 XXF sing 431 n n C8 H2 XXF sing 432 n n C9 H3 XXF sing 433 n n C9 H4 XXF sing 434 n n C1 H5 XXF sing 435 n n C5 H6 XXF sing 436 n n C5 H7 XXF sing 437 n n C6 H8 XXF sing 438 n n C6 H9 XXF sing 439 n n N5 H11 XXF sing 440 n n C10 H12 XXF sing 441 n n C10 H13 XXF sing 442 n n C11 H14 XXF sing 443 n n C11 H15 XXF sing 444 n n C12 H16 XXF sing 445 n n C12 H17 XXF sing 446 n n C13 H18 XXF sing 447 n n C13 H19 XXF sing 448 n n C13 H20 XXF sing 449 n n C17 H21 XXF sing 450 n n C19 H22 XXF sing 451 n n C20 H23 XXF sing 452 n n C21 H24 XXF sing 453 n n # _atom_sites.entry_id 8FP1 _atom_sites.fract_transf_matrix[1][1] 0.019106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XXF A 1 9000 9000 XXF 206 . C 3 HOH A 1 9101 107 HOH HOH . C 3 HOH A 2 9102 128 HOH HOH . C 3 HOH A 3 9103 49 HOH HOH . C 3 HOH A 4 9104 2 HOH HOH . C 3 HOH A 5 9105 60 HOH HOH . C 3 HOH A 6 9106 150 HOH HOH . C 3 HOH A 7 9107 70 HOH HOH . C 3 HOH A 8 9108 52 HOH HOH . C 3 HOH A 9 9109 75 HOH HOH . C 3 HOH A 10 9110 114 HOH HOH . C 3 HOH A 11 9111 118 HOH HOH . C 3 HOH A 12 9112 16 HOH HOH . C 3 HOH A 13 9113 98 HOH HOH . C 3 HOH A 14 9114 30 HOH HOH . C 3 HOH A 15 9115 138 HOH HOH . C 3 HOH A 16 9116 85 HOH HOH . C 3 HOH A 17 9117 89 HOH HOH . C 3 HOH A 18 9118 126 HOH HOH . C 3 HOH A 19 9119 111 HOH HOH . C 3 HOH A 20 9120 50 HOH HOH . C 3 HOH A 21 9121 45 HOH HOH . C 3 HOH A 22 9122 103 HOH HOH . C 3 HOH A 23 9123 1 HOH HOH . C 3 HOH A 24 9124 99 HOH HOH . C 3 HOH A 25 9125 11 HOH HOH . C 3 HOH A 26 9126 101 HOH HOH . C 3 HOH A 27 9127 20 HOH HOH . C 3 HOH A 28 9128 67 HOH HOH . C 3 HOH A 29 9129 146 HOH HOH . C 3 HOH A 30 9130 15 HOH HOH . C 3 HOH A 31 9131 102 HOH HOH . C 3 HOH A 32 9132 68 HOH HOH . C 3 HOH A 33 9133 33 HOH HOH . C 3 HOH A 34 9134 63 HOH HOH . C 3 HOH A 35 9135 9 HOH HOH . C 3 HOH A 36 9136 3 HOH HOH . C 3 HOH A 37 9137 82 HOH HOH . C 3 HOH A 38 9138 64 HOH HOH . C 3 HOH A 39 9139 149 HOH HOH . C 3 HOH A 40 9140 160 HOH HOH . C 3 HOH A 41 9141 54 HOH HOH . C 3 HOH A 42 9142 121 HOH HOH . C 3 HOH A 43 9143 120 HOH HOH . C 3 HOH A 44 9144 57 HOH HOH . C 3 HOH A 45 9145 29 HOH HOH . C 3 HOH A 46 9146 152 HOH HOH . C 3 HOH A 47 9147 23 HOH HOH . C 3 HOH A 48 9148 58 HOH HOH . C 3 HOH A 49 9149 8 HOH HOH . C 3 HOH A 50 9150 88 HOH HOH . C 3 HOH A 51 9151 21 HOH HOH . C 3 HOH A 52 9152 37 HOH HOH . C 3 HOH A 53 9153 27 HOH HOH . C 3 HOH A 54 9154 73 HOH HOH . C 3 HOH A 55 9155 81 HOH HOH . C 3 HOH A 56 9156 40 HOH HOH . C 3 HOH A 57 9157 61 HOH HOH . C 3 HOH A 58 9158 18 HOH HOH . C 3 HOH A 59 9159 48 HOH HOH . C 3 HOH A 60 9160 53 HOH HOH . C 3 HOH A 61 9161 36 HOH HOH . C 3 HOH A 62 9162 142 HOH HOH . C 3 HOH A 63 9163 113 HOH HOH . C 3 HOH A 64 9164 129 HOH HOH . C 3 HOH A 65 9165 127 HOH HOH . C 3 HOH A 66 9166 13 HOH HOH . C 3 HOH A 67 9167 109 HOH HOH . C 3 HOH A 68 9168 56 HOH HOH . C 3 HOH A 69 9169 39 HOH HOH . C 3 HOH A 70 9170 94 HOH HOH . C 3 HOH A 71 9171 80 HOH HOH . C 3 HOH A 72 9172 35 HOH HOH . C 3 HOH A 73 9173 164 HOH HOH . C 3 HOH A 74 9174 42 HOH HOH . C 3 HOH A 75 9175 78 HOH HOH . C 3 HOH A 76 9176 92 HOH HOH . C 3 HOH A 77 9177 44 HOH HOH . C 3 HOH A 78 9178 4 HOH HOH . C 3 HOH A 79 9179 108 HOH HOH . C 3 HOH A 80 9180 55 HOH HOH . C 3 HOH A 81 9181 28 HOH HOH . C 3 HOH A 82 9182 31 HOH HOH . C 3 HOH A 83 9183 91 HOH HOH . C 3 HOH A 84 9184 115 HOH HOH . C 3 HOH A 85 9185 155 HOH HOH . C 3 HOH A 86 9186 97 HOH HOH . C 3 HOH A 87 9187 26 HOH HOH . C 3 HOH A 88 9188 69 HOH HOH . C 3 HOH A 89 9189 87 HOH HOH . C 3 HOH A 90 9190 43 HOH HOH . C 3 HOH A 91 9191 19 HOH HOH . C 3 HOH A 92 9192 110 HOH HOH . C 3 HOH A 93 9193 84 HOH HOH . C 3 HOH A 94 9194 79 HOH HOH . C 3 HOH A 95 9195 22 HOH HOH . C 3 HOH A 96 9196 123 HOH HOH . C 3 HOH A 97 9197 100 HOH HOH . C 3 HOH A 98 9198 74 HOH HOH . C 3 HOH A 99 9199 124 HOH HOH . C 3 HOH A 100 9200 157 HOH HOH . C 3 HOH A 101 9201 86 HOH HOH . C 3 HOH A 102 9202 14 HOH HOH . C 3 HOH A 103 9203 116 HOH HOH . C 3 HOH A 104 9204 90 HOH HOH . C 3 HOH A 105 9205 133 HOH HOH . C 3 HOH A 106 9206 32 HOH HOH . C 3 HOH A 107 9207 153 HOH HOH . C 3 HOH A 108 9208 143 HOH HOH . C 3 HOH A 109 9209 145 HOH HOH . C 3 HOH A 110 9210 106 HOH HOH . C 3 HOH A 111 9211 156 HOH HOH . C 3 HOH A 112 9212 24 HOH HOH . C 3 HOH A 113 9213 46 HOH HOH . C 3 HOH A 114 9214 66 HOH HOH . C 3 HOH A 115 9215 95 HOH HOH . C 3 HOH A 116 9216 96 HOH HOH . C 3 HOH A 117 9217 139 HOH HOH . C 3 HOH A 118 9218 158 HOH HOH . C 3 HOH A 119 9219 159 HOH HOH . C 3 HOH A 120 9220 162 HOH HOH . C 3 HOH A 121 9221 77 HOH HOH . C 3 HOH A 122 9222 134 HOH HOH . C 3 HOH A 123 9223 104 HOH HOH . C 3 HOH A 124 9224 151 HOH HOH . C 3 HOH A 125 9225 12 HOH HOH . C 3 HOH A 126 9226 38 HOH HOH . C 3 HOH A 127 9227 62 HOH HOH . C 3 HOH A 128 9228 17 HOH HOH . C 3 HOH A 129 9229 51 HOH HOH . C 3 HOH A 130 9230 7 HOH HOH . C 3 HOH A 131 9231 125 HOH HOH . C 3 HOH A 132 9232 72 HOH HOH . C 3 HOH A 133 9233 25 HOH HOH . C 3 HOH A 134 9234 154 HOH HOH . C 3 HOH A 135 9235 6 HOH HOH . C 3 HOH A 136 9236 10 HOH HOH . C 3 HOH A 137 9237 93 HOH HOH . C 3 HOH A 138 9238 41 HOH HOH . C 3 HOH A 139 9239 34 HOH HOH . C 3 HOH A 140 9240 117 HOH HOH . C 3 HOH A 141 9241 83 HOH HOH . C 3 HOH A 142 9242 130 HOH HOH . C 3 HOH A 143 9243 136 HOH HOH . C 3 HOH A 144 9244 131 HOH HOH . C 3 HOH A 145 9245 141 HOH HOH . C 3 HOH A 146 9246 122 HOH HOH . C 3 HOH A 147 9247 112 HOH HOH . C 3 HOH A 148 9248 147 HOH HOH . C 3 HOH A 149 9249 47 HOH HOH . C 3 HOH A 150 9250 137 HOH HOH . C 3 HOH A 151 9251 144 HOH HOH . C 3 HOH A 152 9252 140 HOH HOH . C 3 HOH A 153 9253 59 HOH HOH . C 3 HOH A 154 9254 65 HOH HOH . C 3 HOH A 155 9255 5 HOH HOH . C 3 HOH A 156 9256 71 HOH HOH . C 3 HOH A 157 9257 163 HOH HOH . C 3 HOH A 158 9258 148 HOH HOH . C 3 HOH A 159 9259 135 HOH HOH . C 3 HOH A 160 9260 132 HOH HOH . C 3 HOH A 161 9261 119 HOH HOH . C 3 HOH A 162 9262 161 HOH HOH . C 3 HOH A 163 9263 105 HOH HOH . C 3 HOH A 164 9264 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XXF . . . B 2 -14.82 -5.862 11.704 1 17.92 ? N1 XXF 9000 A 1 HETATM 2 C C7 XXF . . . B 2 -16.403 -1.721 11.051 1 19.3 ? C7 XXF 9000 A 1 HETATM 3 C C8 XXF . . . B 2 -15.687 -3.113 11.205 1 18.26 ? C8 XXF 9000 A 1 HETATM 4 N N2 XXF . . . B 2 -15.135 -8.193 12.33 1 17.63 ? N2 XXF 9000 A 1 HETATM 5 C C9 XXF . . . B 2 -17.697 -1.768 10.253 1 19.73 ? C9 XXF 9000 A 1 HETATM 6 O O1 XXF . . . B 2 -16.72 -1.172 12.288 1 18.58 ? O1 XXF 9000 A 1 HETATM 7 C C1 XXF . . . B 2 -14.407 -7.178 11.83 1 18.06 ? C1 XXF 9000 A 1 HETATM 8 C C5 XXF . . . B 2 -16.899 -3.427 13.219 1 16.79 ? C5 XXF 9000 A 1 HETATM 9 C C6 XXF . . . B 2 -17.619 -2.058 13.073 1 17.73 ? C6 XXF 9000 A 1 HETATM 10 N N3 XXF . . . B 2 -16.473 -4.119 11.977 1 17.26 ? N3 XXF 9000 A 1 HETATM 11 C C4 XXF . . . B 2 -16.061 -5.516 12.106 1 17.45 ? C4 XXF 9000 A 1 HETATM 12 C C3 XXF . . . B 2 -16.96 -6.505 12.672 1 18.12 ? C3 XXF 9000 A 1 HETATM 13 C C2 XXF . . . B 2 -16.422 -7.84 12.752 1 18.19 ? C2 XXF 9000 A 1 HETATM 14 N N4 XXF . . . B 2 -17.221 0.63 9.379 1 21.69 ? N4 XXF 9000 A 1 HETATM 15 CL CL1 XXF . . . B 2 -19.99 -8.596 14.299 1 24.48 ? CL1 XXF 9000 A 1 HETATM 16 N N5 XXF . . . B 2 -17.384 -8.696 13.31 1 19.45 ? N5 XXF 9000 A 1 HETATM 17 N N6 XXF . . . B 2 -22.814 -4.102 16.673 1 23.37 ? N6 XXF 9000 A 1 HETATM 18 C C10 XXF . . . B 2 -18.222 -0.316 9.938 1 20.5 ? C10 XXF 9000 A 1 HETATM 19 C C11 XXF . . . B 2 -16.073 0.713 10.253 1 20.76 ? C11 XXF 9000 A 1 HETATM 20 C C12 XXF . . . B 2 -15.421 -0.661 10.556 1 19.96 ? C12 XXF 9000 A 1 HETATM 21 C C13 XXF . . . B 2 -18.028 1.819 9.308 1 22.72 ? C13 XXF 9000 A 1 HETATM 22 C C14 XXF . . . B 2 -18.324 -6.584 13.226 1 19.11 ? C14 XXF 9000 A 1 HETATM 23 C C15 XXF . . . B 2 -18.533 -7.915 13.585 1 20.89 ? C15 XXF 9000 A 1 HETATM 24 C C16 XXF . . . B 2 -19.365 -5.524 13.374 1 20.15 ? C16 XXF 9000 A 1 HETATM 25 C C17 XXF . . . B 2 -20.235 -5.375 14.482 1 20.91 ? C17 XXF 9000 A 1 HETATM 26 C C18 XXF . . . B 2 -21.229 -4.375 14.605 1 21.38 ? C18 XXF 9000 A 1 HETATM 27 C C19 XXF . . . B 2 -21.331 -3.497 13.518 1 20.88 ? C19 XXF 9000 A 1 HETATM 28 C C20 XXF . . . B 2 -20.501 -3.618 12.402 1 20.34 ? C20 XXF 9000 A 1 HETATM 29 C C21 XXF . . . B 2 -19.529 -4.618 12.316 1 20.3 ? C21 XXF 9000 A 1 HETATM 30 C C22 XXF . . . B 2 -22.119 -4.223 15.768 1 22.24 ? C22 XXF 9000 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 30 #