data_8FP3 # _model_server_result.job_id JdFOq4qCKR4ymq1jLgt-ew _model_server_result.datetime_utc '2025-02-05 10:49:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9000}' # _entry.id 8FP3 # _exptl.entry_id 8FP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.847 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FP3 _cell.length_a 52.239 _cell.length_b 77.736 _cell.length_c 95.542 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 182 A ALA 512 1_555 A N TPO 183 A TPO 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 183 A TPO 513 1_555 A N PHE 184 A PHE 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LEU 325 A LEU 655 1_555 A N TPO 326 A TPO 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C TPO 326 A TPO 656 1_555 A N PRO 327 A PRO 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C19 H19 Cl N6' _chem_comp.formula_weight 366.847 _chem_comp.id Y3I _chem_comp.mon_nstd_flag . _chem_comp.name (3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C18 Y3I sing 397 n n C18 C17 Y3I sing 398 n n C18 C2 Y3I sing 399 n n C17 C16 Y3I sing 400 n n C2 N5 Y3I sing 401 n n C16 C19 Y3I sing 402 n n C16 C15 Y3I sing 403 n n N5 C15 Y3I sing 404 n n N5 C14 Y3I sing 405 n n C4 C3 Y3I doub 406 n y C4 C5 Y3I sing 407 n y N3 C14 Y3I doub 408 n y N3 C11 Y3I sing 409 n y C14 C13 Y3I sing 410 n y C3 C8 Y3I sing 411 n y C5 C6 Y3I doub 412 n y C11 N4 Y3I doub 413 n y C13 C9 Y3I sing 414 n y C13 C12 Y3I doub 415 n y C8 C9 Y3I sing 416 n n C8 C7 Y3I doub 417 n y C6 C7 Y3I sing 418 n y C6 C1 Y3I sing 419 n n C9 C10 Y3I doub 420 n y N4 C12 Y3I sing 421 n y C1 N1 Y3I trip 422 n n C12 N2 Y3I sing 423 n y C10 N2 Y3I sing 424 n y C10 CL1 Y3I sing 425 n n C4 H1 Y3I sing 426 n n C5 H2 Y3I sing 427 n n C3 H3 Y3I sing 428 n n C7 H4 Y3I sing 429 n n C11 H5 Y3I sing 430 n n C17 H6 Y3I sing 431 n n C17 H7 Y3I sing 432 n n C15 H8 Y3I sing 433 n n C15 H9 Y3I sing 434 n n C2 H10 Y3I sing 435 n n C2 H11 Y3I sing 436 n n C16 H12 Y3I sing 437 n n C18 H13 Y3I sing 438 n n C19 H14 Y3I sing 439 n n C19 H15 Y3I sing 440 n n C19 H16 Y3I sing 441 n n N2 H17 Y3I sing 442 n n N6 H18 Y3I sing 443 n n N6 H19 Y3I sing 444 n n # _atom_sites.entry_id 8FP3 _atom_sites.fract_transf_matrix[1][1] 0.019143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y3I A 1 9000 9000 Y3I 705 . C 3 HOH A 1 9101 92 HOH HOH . C 3 HOH A 2 9102 106 HOH HOH . C 3 HOH A 3 9103 54 HOH HOH . C 3 HOH A 4 9104 91 HOH HOH . C 3 HOH A 5 9105 11 HOH HOH . C 3 HOH A 6 9106 76 HOH HOH . C 3 HOH A 7 9107 77 HOH HOH . C 3 HOH A 8 9108 14 HOH HOH . C 3 HOH A 9 9109 10 HOH HOH . C 3 HOH A 10 9110 48 HOH HOH . C 3 HOH A 11 9111 30 HOH HOH . C 3 HOH A 12 9112 158 HOH HOH . C 3 HOH A 13 9113 22 HOH HOH . C 3 HOH A 14 9114 65 HOH HOH . C 3 HOH A 15 9115 17 HOH HOH . C 3 HOH A 16 9116 153 HOH HOH . C 3 HOH A 17 9117 68 HOH HOH . C 3 HOH A 18 9118 93 HOH HOH . C 3 HOH A 19 9119 51 HOH HOH . C 3 HOH A 20 9120 63 HOH HOH . C 3 HOH A 21 9121 43 HOH HOH . C 3 HOH A 22 9122 47 HOH HOH . C 3 HOH A 23 9123 37 HOH HOH . C 3 HOH A 24 9124 2 HOH HOH . C 3 HOH A 25 9125 5 HOH HOH . C 3 HOH A 26 9126 105 HOH HOH . C 3 HOH A 27 9127 42 HOH HOH . C 3 HOH A 28 9128 71 HOH HOH . C 3 HOH A 29 9129 61 HOH HOH . C 3 HOH A 30 9130 50 HOH HOH . C 3 HOH A 31 9131 148 HOH HOH . C 3 HOH A 32 9132 40 HOH HOH . C 3 HOH A 33 9133 52 HOH HOH . C 3 HOH A 34 9134 80 HOH HOH . C 3 HOH A 35 9135 33 HOH HOH . C 3 HOH A 36 9136 145 HOH HOH . C 3 HOH A 37 9137 96 HOH HOH . C 3 HOH A 38 9138 156 HOH HOH . C 3 HOH A 39 9139 109 HOH HOH . C 3 HOH A 40 9140 72 HOH HOH . C 3 HOH A 41 9141 3 HOH HOH . C 3 HOH A 42 9142 25 HOH HOH . C 3 HOH A 43 9143 24 HOH HOH . C 3 HOH A 44 9144 45 HOH HOH . C 3 HOH A 45 9145 1 HOH HOH . C 3 HOH A 46 9146 55 HOH HOH . C 3 HOH A 47 9147 97 HOH HOH . C 3 HOH A 48 9148 69 HOH HOH . C 3 HOH A 49 9149 60 HOH HOH . C 3 HOH A 50 9150 27 HOH HOH . C 3 HOH A 51 9151 111 HOH HOH . C 3 HOH A 52 9152 102 HOH HOH . C 3 HOH A 53 9153 62 HOH HOH . C 3 HOH A 54 9154 129 HOH HOH . C 3 HOH A 55 9155 34 HOH HOH . C 3 HOH A 56 9156 29 HOH HOH . C 3 HOH A 57 9157 122 HOH HOH . C 3 HOH A 58 9158 28 HOH HOH . C 3 HOH A 59 9159 13 HOH HOH . C 3 HOH A 60 9160 110 HOH HOH . C 3 HOH A 61 9161 59 HOH HOH . C 3 HOH A 62 9162 127 HOH HOH . C 3 HOH A 63 9163 142 HOH HOH . C 3 HOH A 64 9164 166 HOH HOH . C 3 HOH A 65 9165 44 HOH HOH . C 3 HOH A 66 9166 53 HOH HOH . C 3 HOH A 67 9167 4 HOH HOH . C 3 HOH A 68 9168 67 HOH HOH . C 3 HOH A 69 9169 8 HOH HOH . C 3 HOH A 70 9170 31 HOH HOH . C 3 HOH A 71 9171 104 HOH HOH . C 3 HOH A 72 9172 12 HOH HOH . C 3 HOH A 73 9173 49 HOH HOH . C 3 HOH A 74 9174 7 HOH HOH . C 3 HOH A 75 9175 32 HOH HOH . C 3 HOH A 76 9176 123 HOH HOH . C 3 HOH A 77 9177 73 HOH HOH . C 3 HOH A 78 9178 9 HOH HOH . C 3 HOH A 79 9179 126 HOH HOH . C 3 HOH A 80 9180 125 HOH HOH . C 3 HOH A 81 9181 117 HOH HOH . C 3 HOH A 82 9182 152 HOH HOH . C 3 HOH A 83 9183 58 HOH HOH . C 3 HOH A 84 9184 134 HOH HOH . C 3 HOH A 85 9185 38 HOH HOH . C 3 HOH A 86 9186 143 HOH HOH . C 3 HOH A 87 9187 161 HOH HOH . C 3 HOH A 88 9188 81 HOH HOH . C 3 HOH A 89 9189 155 HOH HOH . C 3 HOH A 90 9190 18 HOH HOH . C 3 HOH A 91 9191 78 HOH HOH . C 3 HOH A 92 9192 46 HOH HOH . C 3 HOH A 93 9193 57 HOH HOH . C 3 HOH A 94 9194 6 HOH HOH . C 3 HOH A 95 9195 36 HOH HOH . C 3 HOH A 96 9196 95 HOH HOH . C 3 HOH A 97 9197 39 HOH HOH . C 3 HOH A 98 9198 113 HOH HOH . C 3 HOH A 99 9199 23 HOH HOH . C 3 HOH A 100 9200 132 HOH HOH . C 3 HOH A 101 9201 16 HOH HOH . C 3 HOH A 102 9202 21 HOH HOH . C 3 HOH A 103 9203 74 HOH HOH . C 3 HOH A 104 9204 98 HOH HOH . C 3 HOH A 105 9205 100 HOH HOH . C 3 HOH A 106 9206 162 HOH HOH . C 3 HOH A 107 9207 88 HOH HOH . C 3 HOH A 108 9208 20 HOH HOH . C 3 HOH A 109 9209 118 HOH HOH . C 3 HOH A 110 9210 114 HOH HOH . C 3 HOH A 111 9211 131 HOH HOH . C 3 HOH A 112 9212 101 HOH HOH . C 3 HOH A 113 9213 41 HOH HOH . C 3 HOH A 114 9214 26 HOH HOH . C 3 HOH A 115 9215 115 HOH HOH . C 3 HOH A 116 9216 94 HOH HOH . C 3 HOH A 117 9217 79 HOH HOH . C 3 HOH A 118 9218 15 HOH HOH . C 3 HOH A 119 9219 70 HOH HOH . C 3 HOH A 120 9220 66 HOH HOH . C 3 HOH A 121 9221 167 HOH HOH . C 3 HOH A 122 9222 157 HOH HOH . C 3 HOH A 123 9223 164 HOH HOH . C 3 HOH A 124 9224 19 HOH HOH . C 3 HOH A 125 9225 108 HOH HOH . C 3 HOH A 126 9226 82 HOH HOH . C 3 HOH A 127 9227 119 HOH HOH . C 3 HOH A 128 9228 130 HOH HOH . C 3 HOH A 129 9229 121 HOH HOH . C 3 HOH A 130 9230 154 HOH HOH . C 3 HOH A 131 9231 133 HOH HOH . C 3 HOH A 132 9232 85 HOH HOH . C 3 HOH A 133 9233 99 HOH HOH . C 3 HOH A 134 9234 141 HOH HOH . C 3 HOH A 135 9235 136 HOH HOH . C 3 HOH A 136 9236 89 HOH HOH . C 3 HOH A 137 9237 163 HOH HOH . C 3 HOH A 138 9238 64 HOH HOH . C 3 HOH A 139 9239 107 HOH HOH . C 3 HOH A 140 9240 151 HOH HOH . C 3 HOH A 141 9241 112 HOH HOH . C 3 HOH A 142 9242 169 HOH HOH . C 3 HOH A 143 9243 35 HOH HOH . C 3 HOH A 144 9244 150 HOH HOH . C 3 HOH A 145 9245 128 HOH HOH . C 3 HOH A 146 9246 168 HOH HOH . C 3 HOH A 147 9247 124 HOH HOH . C 3 HOH A 148 9248 84 HOH HOH . C 3 HOH A 149 9249 120 HOH HOH . C 3 HOH A 150 9250 86 HOH HOH . C 3 HOH A 151 9251 138 HOH HOH . C 3 HOH A 152 9252 159 HOH HOH . C 3 HOH A 153 9253 56 HOH HOH . C 3 HOH A 154 9254 137 HOH HOH . C 3 HOH A 155 9255 139 HOH HOH . C 3 HOH A 156 9256 147 HOH HOH . C 3 HOH A 157 9257 140 HOH HOH . C 3 HOH A 158 9258 116 HOH HOH . C 3 HOH A 159 9259 160 HOH HOH . C 3 HOH A 160 9260 75 HOH HOH . C 3 HOH A 161 9261 171 HOH HOH . C 3 HOH A 162 9262 90 HOH HOH . C 3 HOH A 163 9263 135 HOH HOH . C 3 HOH A 164 9264 172 HOH HOH . C 3 HOH A 165 9265 103 HOH HOH . C 3 HOH A 166 9266 83 HOH HOH . C 3 HOH A 167 9267 87 HOH HOH . C 3 HOH A 168 9268 149 HOH HOH . C 3 HOH A 169 9269 165 HOH HOH . C 3 HOH A 170 9270 146 HOH HOH . C 3 HOH A 171 9271 144 HOH HOH . C 3 HOH A 172 9272 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y3I . . . B 2 -21.629 3.296 -15.76 1 29.14 ? C1 Y3I 9000 A 1 HETATM 2 C C4 Y3I . . . B 2 -20.283 2.897 -12.047 1 29.3 ? C4 Y3I 9000 A 1 HETATM 3 C C5 Y3I . . . B 2 -21.02 2.67 -13.282 1 26.19 ? C5 Y3I 9000 A 1 HETATM 4 C C3 Y3I . . . B 2 -19.349 4.012 -11.955 1 27.78 ? C3 Y3I 9000 A 1 HETATM 5 C C7 Y3I . . . B 2 -19.887 4.667 -14.329 1 28.36 ? C7 Y3I 9000 A 1 HETATM 6 C C11 Y3I . . . B 2 -14.16 6.613 -11.459 1 28.36 ? C11 Y3I 9000 A 1 HETATM 7 C C6 Y3I . . . B 2 -20.824 3.551 -14.417 1 27.24 ? C6 Y3I 9000 A 1 HETATM 8 C C13 Y3I . . . B 2 -16.812 5.978 -12.396 1 27.51 ? C13 Y3I 9000 A 1 HETATM 9 C C8 Y3I . . . B 2 -19.14 4.891 -13.093 1 29.37 ? C8 Y3I 9000 A 1 HETATM 10 C C9 Y3I . . . B 2 -18.209 6.005 -12.966 1 27.64 ? C9 Y3I 9000 A 1 HETATM 11 C C12 Y3I . . . B 2 -16.312 7.32 -12.468 1 25.48 ? C12 Y3I 9000 A 1 HETATM 12 C C14 Y3I . . . B 2 -15.904 4.905 -11.807 1 30.44 ? C14 Y3I 9000 A 1 HETATM 13 C C10 Y3I . . . B 2 -18.469 7.392 -13.346 1 28.11 ? C10 Y3I 9000 A 1 HETATM 14 C C17 Y3I . . . B 2 -16.567 0.411 -11.967 1 28.56 ? C17 Y3I 9000 A 1 HETATM 15 C C15 Y3I . . . B 2 -16.767 2.784 -13.029 1 27.4 ? C15 Y3I 9000 A 1 HETATM 16 C C2 Y3I . . . B 2 -15.545 2.532 -10.798 1 29.51 ? C2 Y3I 9000 A 1 HETATM 17 C C16 Y3I . . . B 2 -17.451 1.342 -12.827 1 27.07 ? C16 Y3I 9000 A 1 HETATM 18 C C18 Y3I . . . B 2 -16.205 1.079 -10.606 1 31.32 ? C18 Y3I 9000 A 1 HETATM 19 C C19 Y3I . . . B 2 -17.672 0.671 -14.276 1 27.37 ? C19 Y3I 9000 A 1 HETATM 20 N N1 Y3I . . . B 2 -22.234 3.103 -16.769 1 37.03 ? N1 Y3I 9000 A 1 HETATM 21 N N4 Y3I . . . B 2 -14.981 7.638 -11.996 1 24.11 ? N4 Y3I 9000 A 1 HETATM 22 N N3 Y3I . . . B 2 -14.622 5.262 -11.368 1 29.95 ? N3 Y3I 9000 A 1 HETATM 23 N N2 Y3I . . . B 2 -17.335 8.174 -13.051 1 25.43 ? N2 Y3I 9000 A 1 HETATM 24 N N5 Y3I . . . B 2 -16.359 3.458 -11.707 1 31.09 ? N5 Y3I 9000 A 1 HETATM 25 N N6 Y3I . . . B 2 -15.222 0.205 -9.887 1 36.23 ? N6 Y3I 9000 A 1 HETATM 26 CL CL1 Y3I . . . B 2 -20.011 8.019 -14.09 1 38.01 ? CL1 Y3I 9000 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #