data_8FPF # _model_server_result.job_id fmNayx4_-DNdX19VrNkVJA _model_server_result.datetime_utc '2024-12-19 00:17:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":612}' # _entry.id 8FPF # _exptl.entry_id 8FPF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FPF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 CA N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8FPF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 POV D 1 701 1 POV POV . D 3 POV D 1 702 2 POV POV . E 3 POV D 1 703 5 POV POV . F 3 POV D 1 704 6 POV POV . G 3 POV D 1 705 7 POV POV . H 3 POV D 1 706 8 POV POV . I 3 POV D 1 707 9 POV POV . J 3 POV D 1 708 10 POV POV . K 3 POV D 1 709 13 POV POV . L 3 POV D 1 710 14 POV POV . M 3 POV D 1 711 15 POV POV . N 3 POV D 1 712 16 POV POV . O 3 POV D 1 713 17 POV POV . P 3 POV D 1 714 22 POV POV . Q 4 ATP D 1 715 1 ATP ATP . R 3 POV C 1 601 3 POV POV . S 3 POV C 1 602 4 POV POV . T 3 POV C 1 603 11 POV POV . U 3 POV C 1 604 12 POV POV . V 3 POV C 1 605 18 POV POV . W 3 POV C 1 606 19 POV POV . X 3 POV C 1 607 20 POV POV . Y 3 POV C 1 608 21 POV POV . Z 3 POV C 1 609 23 POV POV . AA 3 POV C 1 610 24 POV POV . BA 3 POV C 1 611 25 POV POV . CA 4 ATP C 1 612 2 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . CA 4 169.022 180.619 110.191 1 103.05 ? PG ATP 612 C 1 HETATM 2 O O1G ATP . . . CA 4 169.184 179.931 111.517 1 103.05 ? O1G ATP 612 C 1 HETATM 3 O O2G ATP . . . CA 4 167.716 181.345 110.055 1 103.05 ? O2G ATP 612 C 1 HETATM 4 O O3G ATP . . . CA 4 169.321 179.7 109.038 1 103.05 ? O3G ATP 612 C 1 HETATM 5 P PB ATP . . . CA 4 171.69 181.398 109.894 1 103.05 ? PB ATP 612 C 1 HETATM 6 O O1B ATP . . . CA 4 171.995 181.528 108.455 1 103.05 ? O1B ATP 612 C 1 HETATM 7 O O2B ATP . . . CA 4 171.897 180.1 110.582 1 103.05 ? O2B ATP 612 C 1 HETATM 8 O O3B ATP . . . CA 4 170.162 181.744 110.164 1 103.05 ? O3B ATP 612 C 1 HETATM 9 P PA ATP . . . CA 4 172.742 182.623 112.24 1 103.05 ? PA ATP 612 C 1 HETATM 10 O O1A ATP . . . CA 4 171.99 183.801 112.747 1 103.05 ? O1A ATP 612 C 1 HETATM 11 O O2A ATP . . . CA 4 172.439 181.298 112.846 1 103.05 ? O2A ATP 612 C 1 HETATM 12 O O3A ATP . . . CA 4 172.49 182.527 110.677 1 103.05 ? O3A ATP 612 C 1 HETATM 13 O O5' ATP . . . CA 4 174.312 182.91 112.296 1 103.05 ? O5' ATP 612 C 1 HETATM 14 C C5' ATP . . . CA 4 175.2 181.804 112.046 1 103.05 ? C5' ATP 612 C 1 HETATM 15 C C4' ATP . . . CA 4 176.63 182.225 112.273 1 103.05 ? C4' ATP 612 C 1 HETATM 16 O O4' ATP . . . CA 4 176.755 182.846 113.574 1 103.05 ? O4' ATP 612 C 1 HETATM 17 C C3' ATP . . . CA 4 177.649 181.085 112.307 1 103.05 ? C3' ATP 612 C 1 HETATM 18 O O3' ATP . . . CA 4 178.949 181.534 111.956 1 103.05 ? O3' ATP 612 C 1 HETATM 19 C C2' ATP . . . CA 4 177.606 180.645 113.772 1 103.05 ? C2' ATP 612 C 1 HETATM 20 O O2' ATP . . . CA 4 178.842 180.121 114.204 1 103.05 ? O2' ATP 612 C 1 HETATM 21 C C1' ATP . . . CA 4 177.282 181.937 114.517 1 103.05 ? C1' ATP 612 C 1 HETATM 22 N N9 ATP . . . CA 4 176.293 181.761 115.582 1 103.05 ? N9 ATP 612 C 1 HETATM 23 C C8 ATP . . . CA 4 174.959 181.474 115.438 1 103.05 ? C8 ATP 612 C 1 HETATM 24 N N7 ATP . . . CA 4 174.329 181.404 116.587 1 103.05 ? N7 ATP 612 C 1 HETATM 25 C C5 ATP . . . CA 4 175.302 181.677 117.536 1 103.05 ? C5 ATP 612 C 1 HETATM 26 C C6 ATP . . . CA 4 175.258 181.758 118.936 1 103.05 ? C6 ATP 612 C 1 HETATM 27 N N6 ATP . . . CA 4 174.151 181.562 119.644 1 103.05 ? N6 ATP 612 C 1 HETATM 28 N N1 ATP . . . CA 4 176.412 182.056 119.579 1 103.05 ? N1 ATP 612 C 1 HETATM 29 C C2 ATP . . . CA 4 177.516 182.257 118.849 1 103.05 ? C2 ATP 612 C 1 HETATM 30 N N3 ATP . . . CA 4 177.673 182.207 117.53 1 103.05 ? N3 ATP 612 C 1 HETATM 31 C C4 ATP . . . CA 4 176.514 181.908 116.926 1 103.05 ? C4 ATP 612 C 1 HETATM 32 H "H5'1" ATP . . . CA 4 174.95 180.972 112.702 1 103.05 ? "H5'1" ATP 612 C 1 HETATM 33 H "H5'2" ATP . . . CA 4 175.075 181.452 111.023 1 103.05 ? "H5'2" ATP 612 C 1 HETATM 34 H H4' ATP . . . CA 4 176.845 182.878 111.428 1 103.05 ? H4' ATP 612 C 1 HETATM 35 H H3' ATP . . . CA 4 177.421 180.289 111.6 1 103.05 ? H3' ATP 612 C 1 HETATM 36 H HO3' ATP . . . CA 4 179.569 180.788 111.988 1 103.05 ? HO3' ATP 612 C 1 HETATM 37 H H2' ATP . . . CA 4 176.883 179.849 113.942 1 103.05 ? H2' ATP 612 C 1 HETATM 38 H HO2' ATP . . . CA 4 178.773 179.855 115.134 1 103.05 ? HO2' ATP 612 C 1 HETATM 39 H H1' ATP . . . CA 4 178.199 182.291 114.987 1 103.05 ? H1' ATP 612 C 1 HETATM 40 H H8 ATP . . . CA 4 174.478 181.322 114.481 1 103.05 ? H8 ATP 612 C 1 HETATM 41 H HN61 ATP . . . CA 4 174.177 181.633 120.657 1 103.05 ? HN61 ATP 612 C 1 HETATM 42 H HN62 ATP . . . CA 4 173.279 181.341 119.172 1 103.05 ? HN62 ATP 612 C 1 HETATM 43 H H2 ATP . . . CA 4 178.408 182.494 119.413 1 103.05 ? H2 ATP 612 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #