data_8FPK # _model_server_result.job_id Uk8d2OytOGv3RLChxyoGzA _model_server_result.datetime_utc '2024-12-22 03:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 8FPK # _exptl.entry_id 8FPK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 236.184 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(aminomethyl)-7-nitro-1,4-dihydroquinoxaline-2,3-dione _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FPK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 739 B CYS 718 1_555 A SG CYS 794 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 739 C CYS 718 1_555 B SG CYS 794 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 739 A CYS 718 1_555 C SG CYS 794 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 739 D CYS 718 1_555 D SG CYS 794 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C9 H8 N4 O4' _chem_comp.formula_weight 236.184 _chem_comp.id Y4Y _chem_comp.mon_nstd_flag . _chem_comp.name 6-(aminomethyl)-7-nitro-1,4-dihydroquinoxaline-2,3-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 N3 Y4Y doub 417 n n N17 C Y4Y sing 418 n n O3 N3 Y4Y doub 419 n n N3 C7 Y4Y sing 420 n n C C8 Y4Y sing 421 n n C7 C8 Y4Y doub 422 n y C7 C5 Y4Y sing 423 n y C8 C6 Y4Y sing 424 n y C5 C3 Y4Y doub 425 n y C6 C4 Y4Y doub 426 n y C3 C4 Y4Y sing 427 n y C3 N1 Y4Y sing 428 n n C4 N2 Y4Y sing 429 n n N1 C1 Y4Y sing 430 n n N2 C2 Y4Y sing 431 n n C1 C2 Y4Y sing 432 n n C1 O1 Y4Y doub 433 n n C2 O2 Y4Y doub 434 n n C5 H1 Y4Y sing 435 n n C6 H2 Y4Y sing 436 n n N2 H3 Y4Y sing 437 n n N1 H4 Y4Y sing 438 n n C H5 Y4Y sing 439 n n C H6 Y4Y sing 440 n n N17 H7 Y4Y sing 441 n n N17 H8 Y4Y sing 442 n n # _atom_sites.entry_id 8FPK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y4Y B 1 901 774 Y4Y CNI . F 3 CYZ B 1 902 775 CYZ CYZ . G 2 Y4Y C 1 901 774 Y4Y CNI . H 3 CYZ C 1 902 775 CYZ CYZ . I 2 Y4Y A 1 901 774 Y4Y CNI . J 3 CYZ A 1 902 775 CYZ CYZ . K 2 Y4Y D 1 901 774 Y4Y CNI . L 3 CYZ D 1 902 775 CYZ CYZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y4Y . . . G 2 128.313 168.776 172.92 1 50.2 ? C1 Y4Y 901 C 1 HETATM 2 C C2 Y4Y . . . G 2 127.043 168.113 172.846 1 43.69 ? C2 Y4Y 901 C 1 HETATM 3 C C3 Y4Y . . . G 2 128.124 169.372 170.68 1 51.43 ? C3 Y4Y 901 C 1 HETATM 4 C C4 Y4Y . . . G 2 126.897 168.729 170.618 1 48.9 ? C4 Y4Y 901 C 1 HETATM 5 C C5 Y4Y . . . G 2 128.658 170.028 169.511 1 49.76 ? C5 Y4Y 901 C 1 HETATM 6 C C6 Y4Y . . . G 2 126.152 168.711 169.38 1 48.37 ? C6 Y4Y 901 C 1 HETATM 7 C C8 Y4Y . . . G 2 126.669 169.344 168.248 1 49.34 ? C8 Y4Y 901 C 1 HETATM 8 O O1 Y4Y . . . G 2 129.019 168.787 174.113 1 56.15 ? O1 Y4Y 901 C 1 HETATM 9 O O2 Y4Y . . . G 2 126.507 167.457 174.018 1 51.16 ? O2 Y4Y 901 C 1 HETATM 10 N N2 Y4Y . . . G 2 126.363 168.094 171.726 1 39.68 ? N2 Y4Y 901 C 1 HETATM 11 N N1 Y4Y . . . G 2 128.822 169.386 171.846 1 52.05 ? N1 Y4Y 901 C 1 HETATM 12 C C7 Y4Y . . . G 2 127.931 170.009 168.311 1 52.81 ? C7 Y4Y 901 C 1 HETATM 13 N N3 Y4Y . . . G 2 128.473 170.685 167.086 1 59.67 ? N3 Y4Y 901 C 1 HETATM 14 O O3 Y4Y . . . G 2 127.957 171.962 166.685 1 55.06 ? O3 Y4Y 901 C 1 HETATM 15 O O5 Y4Y . . . G 2 129.481 170.062 166.329 1 55.32 ? O5 Y4Y 901 C 1 HETATM 16 C C Y4Y . . . G 2 125.878 169.328 166.928 1 47.49 ? C Y4Y 901 C 1 HETATM 17 N N17 Y4Y . . . G 2 124.462 169.657 167.178 1 47.81 ? N17 Y4Y 901 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #