data_8FPW # _model_server_result.job_id QrDTow5M6u1sv6TIQE9x5Q _model_server_result.datetime_utc '2024-11-24 21:55:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8FPW # _exptl.entry_id 8FPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.75 _cell.angle_gamma 90 _cell.entry_id 8FPW _cell.length_a 32.01 _cell.length_b 86.844 _cell.length_c 34.337 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A O PRO 38 A PRO 36 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 B O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 C MG MG . A MG 202 1_555 F O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 C MG MG . A MG 202 1_555 F O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc6 C MG MG . A MG 202 1_555 F O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 8FPW _atom_sites.fract_transf_matrix[1][1] 0.03124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 202 MG MG . D 4 DIO A 1 203 203 DIO DIO . E 4 DIO A 1 204 204 DIO DIO . F 5 HOH A 1 301 400 HOH HOH . F 5 HOH A 2 302 375 HOH HOH . F 5 HOH A 3 303 356 HOH HOH . F 5 HOH A 4 304 384 HOH HOH . F 5 HOH A 5 305 462 HOH HOH . F 5 HOH A 6 306 422 HOH HOH . F 5 HOH A 7 307 460 HOH HOH . F 5 HOH A 8 308 503 HOH HOH . F 5 HOH A 9 309 335 HOH HOH . F 5 HOH A 10 310 484 HOH HOH . F 5 HOH A 11 311 466 HOH HOH . F 5 HOH A 12 312 497 HOH HOH . F 5 HOH A 13 313 443 HOH HOH . F 5 HOH A 14 314 434 HOH HOH . F 5 HOH A 15 315 359 HOH HOH . F 5 HOH A 16 316 521 HOH HOH . F 5 HOH A 17 317 523 HOH HOH . F 5 HOH A 18 318 490 HOH HOH . F 5 HOH A 19 319 487 HOH HOH . F 5 HOH A 20 320 449 HOH HOH . F 5 HOH A 21 321 345 HOH HOH . F 5 HOH A 22 322 397 HOH HOH . F 5 HOH A 23 323 515 HOH HOH . F 5 HOH A 24 324 332 HOH HOH . F 5 HOH A 25 325 472 HOH HOH . F 5 HOH A 26 326 321 HOH HOH . F 5 HOH A 27 327 393 HOH HOH . F 5 HOH A 28 328 310 HOH HOH . F 5 HOH A 29 329 476 HOH HOH . F 5 HOH A 30 330 315 HOH HOH . F 5 HOH A 31 331 317 HOH HOH . F 5 HOH A 32 332 431 HOH HOH . F 5 HOH A 33 333 365 HOH HOH . F 5 HOH A 34 334 482 HOH HOH . F 5 HOH A 35 335 451 HOH HOH . F 5 HOH A 36 336 401 HOH HOH . F 5 HOH A 37 337 516 HOH HOH . F 5 HOH A 38 338 314 HOH HOH . F 5 HOH A 39 339 412 HOH HOH . F 5 HOH A 40 340 407 HOH HOH . F 5 HOH A 41 341 309 HOH HOH . F 5 HOH A 42 342 395 HOH HOH . F 5 HOH A 43 343 374 HOH HOH . F 5 HOH A 44 344 470 HOH HOH . F 5 HOH A 45 345 494 HOH HOH . F 5 HOH A 46 346 336 HOH HOH . F 5 HOH A 47 347 452 HOH HOH . F 5 HOH A 48 348 325 HOH HOH . F 5 HOH A 49 349 360 HOH HOH . F 5 HOH A 50 350 326 HOH HOH . F 5 HOH A 51 351 363 HOH HOH . F 5 HOH A 52 352 303 HOH HOH . F 5 HOH A 53 353 340 HOH HOH . F 5 HOH A 54 354 485 HOH HOH . F 5 HOH A 55 355 306 HOH HOH . F 5 HOH A 56 356 402 HOH HOH . F 5 HOH A 57 357 387 HOH HOH . F 5 HOH A 58 358 396 HOH HOH . F 5 HOH A 59 359 391 HOH HOH . F 5 HOH A 60 360 333 HOH HOH . F 5 HOH A 61 361 305 HOH HOH . F 5 HOH A 62 362 479 HOH HOH . F 5 HOH A 63 363 322 HOH HOH . F 5 HOH A 64 364 355 HOH HOH . F 5 HOH A 65 365 461 HOH HOH . F 5 HOH A 66 366 427 HOH HOH . F 5 HOH A 67 367 398 HOH HOH . F 5 HOH A 68 368 377 HOH HOH . F 5 HOH A 69 369 531 HOH HOH . F 5 HOH A 70 370 304 HOH HOH . F 5 HOH A 71 371 308 HOH HOH . F 5 HOH A 72 372 316 HOH HOH . F 5 HOH A 73 373 346 HOH HOH . F 5 HOH A 74 374 361 HOH HOH . F 5 HOH A 75 375 424 HOH HOH . F 5 HOH A 76 376 313 HOH HOH . F 5 HOH A 77 377 406 HOH HOH . F 5 HOH A 78 378 342 HOH HOH . F 5 HOH A 79 379 347 HOH HOH . F 5 HOH A 80 380 426 HOH HOH . F 5 HOH A 81 381 483 HOH HOH . F 5 HOH A 82 382 450 HOH HOH . F 5 HOH A 83 383 334 HOH HOH . F 5 HOH A 84 384 329 HOH HOH . F 5 HOH A 85 385 518 HOH HOH . F 5 HOH A 86 386 505 HOH HOH . F 5 HOH A 87 387 411 HOH HOH . F 5 HOH A 88 388 312 HOH HOH . F 5 HOH A 89 389 413 HOH HOH . F 5 HOH A 90 390 372 HOH HOH . F 5 HOH A 91 391 348 HOH HOH . F 5 HOH A 92 392 302 HOH HOH . F 5 HOH A 93 393 341 HOH HOH . F 5 HOH A 94 394 311 HOH HOH . F 5 HOH A 95 395 493 HOH HOH . F 5 HOH A 96 396 328 HOH HOH . F 5 HOH A 97 397 438 HOH HOH . F 5 HOH A 98 398 453 HOH HOH . F 5 HOH A 99 399 502 HOH HOH . F 5 HOH A 100 400 491 HOH HOH . F 5 HOH A 101 401 301 HOH HOH . F 5 HOH A 102 402 344 HOH HOH . F 5 HOH A 103 403 366 HOH HOH . F 5 HOH A 104 404 338 HOH HOH . F 5 HOH A 105 405 368 HOH HOH . F 5 HOH A 106 406 307 HOH HOH . F 5 HOH A 107 407 530 HOH HOH . F 5 HOH A 108 408 362 HOH HOH . F 5 HOH A 109 409 415 HOH HOH . F 5 HOH A 110 410 339 HOH HOH . F 5 HOH A 111 411 480 HOH HOH . F 5 HOH A 112 412 371 HOH HOH . F 5 HOH A 113 413 539 HOH HOH . F 5 HOH A 114 414 318 HOH HOH . F 5 HOH A 115 415 380 HOH HOH . F 5 HOH A 116 416 331 HOH HOH . F 5 HOH A 117 417 367 HOH HOH . F 5 HOH A 118 418 343 HOH HOH . F 5 HOH A 119 419 423 HOH HOH . F 5 HOH A 120 420 533 HOH HOH . F 5 HOH A 121 421 349 HOH HOH . F 5 HOH A 122 422 379 HOH HOH . F 5 HOH A 123 423 370 HOH HOH . F 5 HOH A 124 424 386 HOH HOH . F 5 HOH A 125 425 524 HOH HOH . F 5 HOH A 126 426 437 HOH HOH . F 5 HOH A 127 427 433 HOH HOH . F 5 HOH A 128 428 373 HOH HOH . F 5 HOH A 129 429 430 HOH HOH . F 5 HOH A 130 430 364 HOH HOH . F 5 HOH A 131 431 495 HOH HOH . F 5 HOH A 132 432 369 HOH HOH . F 5 HOH A 133 433 532 HOH HOH . F 5 HOH A 134 434 418 HOH HOH . F 5 HOH A 135 435 473 HOH HOH . F 5 HOH A 136 436 388 HOH HOH . F 5 HOH A 137 437 382 HOH HOH . F 5 HOH A 138 438 508 HOH HOH . F 5 HOH A 139 439 394 HOH HOH . F 5 HOH A 140 440 447 HOH HOH . F 5 HOH A 141 441 323 HOH HOH . F 5 HOH A 142 442 429 HOH HOH . F 5 HOH A 143 443 511 HOH HOH . F 5 HOH A 144 444 319 HOH HOH . F 5 HOH A 145 445 500 HOH HOH . F 5 HOH A 146 446 376 HOH HOH . F 5 HOH A 147 447 432 HOH HOH . F 5 HOH A 148 448 457 HOH HOH . F 5 HOH A 149 449 477 HOH HOH . F 5 HOH A 150 450 475 HOH HOH . F 5 HOH A 151 451 351 HOH HOH . F 5 HOH A 152 452 481 HOH HOH . F 5 HOH A 153 453 489 HOH HOH . F 5 HOH A 154 454 535 HOH HOH . F 5 HOH A 155 455 446 HOH HOH . F 5 HOH A 156 456 417 HOH HOH . F 5 HOH A 157 457 405 HOH HOH . F 5 HOH A 158 458 420 HOH HOH . F 5 HOH A 159 459 358 HOH HOH . F 5 HOH A 160 460 352 HOH HOH . F 5 HOH A 161 461 464 HOH HOH . F 5 HOH A 162 462 435 HOH HOH . F 5 HOH A 163 463 416 HOH HOH . F 5 HOH A 164 464 445 HOH HOH . F 5 HOH A 165 465 496 HOH HOH . F 5 HOH A 166 466 442 HOH HOH . F 5 HOH A 167 467 425 HOH HOH . F 5 HOH A 168 468 454 HOH HOH . F 5 HOH A 169 469 444 HOH HOH . F 5 HOH A 170 470 337 HOH HOH . F 5 HOH A 171 471 409 HOH HOH . F 5 HOH A 172 472 357 HOH HOH . F 5 HOH A 173 473 512 HOH HOH . F 5 HOH A 174 474 350 HOH HOH . F 5 HOH A 175 475 399 HOH HOH . F 5 HOH A 176 476 324 HOH HOH . F 5 HOH A 177 477 478 HOH HOH . F 5 HOH A 178 478 354 HOH HOH . F 5 HOH A 179 479 404 HOH HOH . F 5 HOH A 180 480 536 HOH HOH . F 5 HOH A 181 481 463 HOH HOH . F 5 HOH A 182 482 537 HOH HOH . F 5 HOH A 183 483 436 HOH HOH . F 5 HOH A 184 484 389 HOH HOH . F 5 HOH A 185 485 414 HOH HOH . F 5 HOH A 186 486 519 HOH HOH . F 5 HOH A 187 487 492 HOH HOH . F 5 HOH A 188 488 520 HOH HOH . F 5 HOH A 189 489 468 HOH HOH . F 5 HOH A 190 490 428 HOH HOH . F 5 HOH A 191 491 421 HOH HOH . F 5 HOH A 192 492 504 HOH HOH . F 5 HOH A 193 493 385 HOH HOH . F 5 HOH A 194 494 390 HOH HOH . F 5 HOH A 195 495 514 HOH HOH . F 5 HOH A 196 496 440 HOH HOH . F 5 HOH A 197 497 353 HOH HOH . F 5 HOH A 198 498 381 HOH HOH . F 5 HOH A 199 499 474 HOH HOH . F 5 HOH A 200 500 501 HOH HOH . F 5 HOH A 201 501 534 HOH HOH . F 5 HOH A 202 502 510 HOH HOH . F 5 HOH A 203 503 441 HOH HOH . F 5 HOH A 204 504 498 HOH HOH . F 5 HOH A 205 505 499 HOH HOH . F 5 HOH A 206 506 467 HOH HOH . F 5 HOH A 207 507 410 HOH HOH . F 5 HOH A 208 508 486 HOH HOH . F 5 HOH A 209 509 403 HOH HOH . F 5 HOH A 210 510 509 HOH HOH . F 5 HOH A 211 511 465 HOH HOH . F 5 HOH A 212 512 538 HOH HOH . F 5 HOH A 213 513 439 HOH HOH . F 5 HOH A 214 514 507 HOH HOH . F 5 HOH A 215 515 378 HOH HOH . F 5 HOH A 216 516 458 HOH HOH . F 5 HOH A 217 517 459 HOH HOH . F 5 HOH A 218 518 448 HOH HOH . F 5 HOH A 219 519 320 HOH HOH . F 5 HOH A 220 520 455 HOH HOH . F 5 HOH A 221 521 522 HOH HOH . F 5 HOH A 222 522 330 HOH HOH . F 5 HOH A 223 523 408 HOH HOH . F 5 HOH A 224 524 327 HOH HOH . F 5 HOH A 225 525 526 HOH HOH . F 5 HOH A 226 526 383 HOH HOH . F 5 HOH A 227 527 525 HOH HOH . F 5 HOH A 228 528 469 HOH HOH . F 5 HOH A 229 529 513 HOH HOH . F 5 HOH A 230 530 527 HOH HOH . F 5 HOH A 231 531 528 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . D 4 -5.1 -0.623 14.655 1 29.34 ? C1 DIO 203 A 1 HETATM 2 C C2 DIO . . . D 4 -4.762 0.638 12.692 1 25.66 ? C2 DIO 203 A 1 HETATM 3 C C1' DIO . . . D 4 -4.522 -1.884 13.953 1 26.92 ? C1' DIO 203 A 1 HETATM 4 C C2' DIO . . . D 4 -4.156 -0.606 11.998 1 25.92 ? C2' DIO 203 A 1 HETATM 5 O O1 DIO . . . D 4 -4.518 0.499 14.062 1 31.31 ? O1 DIO 203 A 1 HETATM 6 O O1' DIO . . . D 4 -4.743 -1.739 12.579 1 30.05 ? O1' DIO 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #