data_8FPX
#
_model_server_result.job_id            VS2MkXzvRvmCr4CKaCd8_A 
_model_server_result.datetime_utc      '2024-10-11 06:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    8FPX 
#
_exptl.entry_id    8FPX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.91 
_cell.angle_gamma         90 
_cell.entry_id            8FPX 
_cell.length_a            32.212 
_cell.length_b            87.265 
_cell.length_c            34.044 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc2 A O PRO 38 A PRO 36 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc3 B O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc4 C MG MG . A MG 202 1_555 E O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 83 n n 
C1 O1 DIO sing 84 n n 
C1 H11 DIO sing 85 n n 
C1 H12 DIO sing 86 n n 
C2 C2' DIO sing 87 n n 
C2 O1 DIO sing 88 n n 
C2 H21 DIO sing 89 n n 
C2 H22 DIO sing 90 n n 
C1' O1' DIO sing 91 n n 
C1' "H1'1" DIO sing 92 n n 
C1' "H1'2" DIO sing 93 n n 
C2' O1' DIO sing 94 n n 
C2' "H2'1" DIO sing 95 n n 
C2' "H2'2" DIO sing 96 n n 
#
_atom_sites.entry_id                     8FPX 
_atom_sites.fract_transf_matrix[1][1]    0.031044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003211 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029531 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 201 201 GDP GDP . 
C 3 MG A 1 202 202 MG MG . 
D 4 DIO A 1 203 203 DIO DIO . 
E 5 HOH A 1 301 518 HOH HOH . 
E 5 HOH A 2 302 467 HOH HOH . 
E 5 HOH A 3 303 363 HOH HOH . 
E 5 HOH A 4 304 419 HOH HOH . 
E 5 HOH A 5 305 503 HOH HOH . 
E 5 HOH A 6 306 489 HOH HOH . 
E 5 HOH A 7 307 383 HOH HOH . 
E 5 HOH A 8 308 431 HOH HOH . 
E 5 HOH A 9 309 506 HOH HOH . 
E 5 HOH A 10 310 451 HOH HOH . 
E 5 HOH A 11 311 380 HOH HOH . 
E 5 HOH A 12 312 414 HOH HOH . 
E 5 HOH A 13 313 364 HOH HOH . 
E 5 HOH A 14 314 411 HOH HOH . 
E 5 HOH A 15 315 476 HOH HOH . 
E 5 HOH A 16 316 412 HOH HOH . 
E 5 HOH A 17 317 401 HOH HOH . 
E 5 HOH A 18 318 444 HOH HOH . 
E 5 HOH A 19 319 405 HOH HOH . 
E 5 HOH A 20 320 302 HOH HOH . 
E 5 HOH A 21 321 340 HOH HOH . 
E 5 HOH A 22 322 390 HOH HOH . 
E 5 HOH A 23 323 382 HOH HOH . 
E 5 HOH A 24 324 338 HOH HOH . 
E 5 HOH A 25 325 361 HOH HOH . 
E 5 HOH A 26 326 398 HOH HOH . 
E 5 HOH A 27 327 330 HOH HOH . 
E 5 HOH A 28 328 370 HOH HOH . 
E 5 HOH A 29 329 341 HOH HOH . 
E 5 HOH A 30 330 327 HOH HOH . 
E 5 HOH A 31 331 329 HOH HOH . 
E 5 HOH A 32 332 430 HOH HOH . 
E 5 HOH A 33 333 519 HOH HOH . 
E 5 HOH A 34 334 317 HOH HOH . 
E 5 HOH A 35 335 377 HOH HOH . 
E 5 HOH A 36 336 301 HOH HOH . 
E 5 HOH A 37 337 304 HOH HOH . 
E 5 HOH A 38 338 402 HOH HOH . 
E 5 HOH A 39 339 417 HOH HOH . 
E 5 HOH A 40 340 326 HOH HOH . 
E 5 HOH A 41 341 442 HOH HOH . 
E 5 HOH A 42 342 400 HOH HOH . 
E 5 HOH A 43 343 446 HOH HOH . 
E 5 HOH A 44 344 344 HOH HOH . 
E 5 HOH A 45 345 315 HOH HOH . 
E 5 HOH A 46 346 455 HOH HOH . 
E 5 HOH A 47 347 360 HOH HOH . 
E 5 HOH A 48 348 342 HOH HOH . 
E 5 HOH A 49 349 352 HOH HOH . 
E 5 HOH A 50 350 305 HOH HOH . 
E 5 HOH A 51 351 339 HOH HOH . 
E 5 HOH A 52 352 325 HOH HOH . 
E 5 HOH A 53 353 306 HOH HOH . 
E 5 HOH A 54 354 343 HOH HOH . 
E 5 HOH A 55 355 408 HOH HOH . 
E 5 HOH A 56 356 526 HOH HOH . 
E 5 HOH A 57 357 310 HOH HOH . 
E 5 HOH A 58 358 312 HOH HOH . 
E 5 HOH A 59 359 334 HOH HOH . 
E 5 HOH A 60 360 369 HOH HOH . 
E 5 HOH A 61 361 514 HOH HOH . 
E 5 HOH A 62 362 379 HOH HOH . 
E 5 HOH A 63 363 410 HOH HOH . 
E 5 HOH A 64 364 319 HOH HOH . 
E 5 HOH A 65 365 391 HOH HOH . 
E 5 HOH A 66 366 365 HOH HOH . 
E 5 HOH A 67 367 349 HOH HOH . 
E 5 HOH A 68 368 359 HOH HOH . 
E 5 HOH A 69 369 311 HOH HOH . 
E 5 HOH A 70 370 321 HOH HOH . 
E 5 HOH A 71 371 357 HOH HOH . 
E 5 HOH A 72 372 393 HOH HOH . 
E 5 HOH A 73 373 308 HOH HOH . 
E 5 HOH A 74 374 428 HOH HOH . 
E 5 HOH A 75 375 496 HOH HOH . 
E 5 HOH A 76 376 345 HOH HOH . 
E 5 HOH A 77 377 493 HOH HOH . 
E 5 HOH A 78 378 484 HOH HOH . 
E 5 HOH A 79 379 461 HOH HOH . 
E 5 HOH A 80 380 407 HOH HOH . 
E 5 HOH A 81 381 309 HOH HOH . 
E 5 HOH A 82 382 452 HOH HOH . 
E 5 HOH A 83 383 501 HOH HOH . 
E 5 HOH A 84 384 404 HOH HOH . 
E 5 HOH A 85 385 441 HOH HOH . 
E 5 HOH A 86 386 462 HOH HOH . 
E 5 HOH A 87 387 322 HOH HOH . 
E 5 HOH A 88 388 314 HOH HOH . 
E 5 HOH A 89 389 492 HOH HOH . 
E 5 HOH A 90 390 320 HOH HOH . 
E 5 HOH A 91 391 465 HOH HOH . 
E 5 HOH A 92 392 416 HOH HOH . 
E 5 HOH A 93 393 303 HOH HOH . 
E 5 HOH A 94 394 396 HOH HOH . 
E 5 HOH A 95 395 336 HOH HOH . 
E 5 HOH A 96 396 440 HOH HOH . 
E 5 HOH A 97 397 351 HOH HOH . 
E 5 HOH A 98 398 366 HOH HOH . 
E 5 HOH A 99 399 504 HOH HOH . 
E 5 HOH A 100 400 438 HOH HOH . 
E 5 HOH A 101 401 481 HOH HOH . 
E 5 HOH A 102 402 313 HOH HOH . 
E 5 HOH A 103 403 475 HOH HOH . 
E 5 HOH A 104 404 434 HOH HOH . 
E 5 HOH A 105 405 406 HOH HOH . 
E 5 HOH A 106 406 307 HOH HOH . 
E 5 HOH A 107 407 425 HOH HOH . 
E 5 HOH A 108 408 353 HOH HOH . 
E 5 HOH A 109 409 368 HOH HOH . 
E 5 HOH A 110 410 480 HOH HOH . 
E 5 HOH A 111 411 509 HOH HOH . 
E 5 HOH A 112 412 331 HOH HOH . 
E 5 HOH A 113 413 337 HOH HOH . 
E 5 HOH A 114 414 512 HOH HOH . 
E 5 HOH A 115 415 468 HOH HOH . 
E 5 HOH A 116 416 421 HOH HOH . 
E 5 HOH A 117 417 498 HOH HOH . 
E 5 HOH A 118 418 422 HOH HOH . 
E 5 HOH A 119 419 427 HOH HOH . 
E 5 HOH A 120 420 372 HOH HOH . 
E 5 HOH A 121 421 335 HOH HOH . 
E 5 HOH A 122 422 433 HOH HOH . 
E 5 HOH A 123 423 358 HOH HOH . 
E 5 HOH A 124 424 435 HOH HOH . 
E 5 HOH A 125 425 413 HOH HOH . 
E 5 HOH A 126 426 516 HOH HOH . 
E 5 HOH A 127 427 524 HOH HOH . 
E 5 HOH A 128 428 508 HOH HOH . 
E 5 HOH A 129 429 387 HOH HOH . 
E 5 HOH A 130 430 436 HOH HOH . 
E 5 HOH A 131 431 316 HOH HOH . 
E 5 HOH A 132 432 347 HOH HOH . 
E 5 HOH A 133 433 323 HOH HOH . 
E 5 HOH A 134 434 502 HOH HOH . 
E 5 HOH A 135 435 513 HOH HOH . 
E 5 HOH A 136 436 367 HOH HOH . 
E 5 HOH A 137 437 482 HOH HOH . 
E 5 HOH A 138 438 374 HOH HOH . 
E 5 HOH A 139 439 474 HOH HOH . 
E 5 HOH A 140 440 483 HOH HOH . 
E 5 HOH A 141 441 457 HOH HOH . 
E 5 HOH A 142 442 521 HOH HOH . 
E 5 HOH A 143 443 399 HOH HOH . 
E 5 HOH A 144 444 378 HOH HOH . 
E 5 HOH A 145 445 362 HOH HOH . 
E 5 HOH A 146 446 439 HOH HOH . 
E 5 HOH A 147 447 389 HOH HOH . 
E 5 HOH A 148 448 463 HOH HOH . 
E 5 HOH A 149 449 437 HOH HOH . 
E 5 HOH A 150 450 479 HOH HOH . 
E 5 HOH A 151 451 346 HOH HOH . 
E 5 HOH A 152 452 418 HOH HOH . 
E 5 HOH A 153 453 373 HOH HOH . 
E 5 HOH A 154 454 415 HOH HOH . 
E 5 HOH A 155 455 491 HOH HOH . 
E 5 HOH A 156 456 511 HOH HOH . 
E 5 HOH A 157 457 348 HOH HOH . 
E 5 HOH A 158 458 354 HOH HOH . 
E 5 HOH A 159 459 333 HOH HOH . 
E 5 HOH A 160 460 375 HOH HOH . 
E 5 HOH A 161 461 356 HOH HOH . 
E 5 HOH A 162 462 376 HOH HOH . 
E 5 HOH A 163 463 499 HOH HOH . 
E 5 HOH A 164 464 424 HOH HOH . 
E 5 HOH A 165 465 392 HOH HOH . 
E 5 HOH A 166 466 448 HOH HOH . 
E 5 HOH A 167 467 460 HOH HOH . 
E 5 HOH A 168 468 450 HOH HOH . 
E 5 HOH A 169 469 403 HOH HOH . 
E 5 HOH A 170 470 497 HOH HOH . 
E 5 HOH A 171 471 386 HOH HOH . 
E 5 HOH A 172 472 423 HOH HOH . 
E 5 HOH A 173 473 458 HOH HOH . 
E 5 HOH A 174 474 487 HOH HOH . 
E 5 HOH A 175 475 453 HOH HOH . 
E 5 HOH A 176 476 456 HOH HOH . 
E 5 HOH A 177 477 371 HOH HOH . 
E 5 HOH A 178 478 432 HOH HOH . 
E 5 HOH A 179 479 394 HOH HOH . 
E 5 HOH A 180 480 328 HOH HOH . 
E 5 HOH A 181 481 420 HOH HOH . 
E 5 HOH A 182 482 318 HOH HOH . 
E 5 HOH A 183 483 409 HOH HOH . 
E 5 HOH A 184 484 388 HOH HOH . 
E 5 HOH A 185 485 350 HOH HOH . 
E 5 HOH A 186 486 384 HOH HOH . 
E 5 HOH A 187 487 395 HOH HOH . 
E 5 HOH A 188 488 515 HOH HOH . 
E 5 HOH A 189 489 324 HOH HOH . 
E 5 HOH A 190 490 381 HOH HOH . 
E 5 HOH A 191 491 355 HOH HOH . 
E 5 HOH A 192 492 397 HOH HOH . 
E 5 HOH A 193 493 485 HOH HOH . 
E 5 HOH A 194 494 332 HOH HOH . 
E 5 HOH A 195 495 525 HOH HOH . 
E 5 HOH A 196 496 454 HOH HOH . 
E 5 HOH A 197 497 449 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . D 4 -10.438 3.807 7.991 1 28.95 ? C1 DIO 203 A 1 
HETATM 2 C C2 DIO . . . D 4 -9.137 2.795 6.268 1 23.17 ? C2 DIO 203 A 1 
HETATM 3 C C1' DIO . . . D 4 -10.151 2.591 8.931 1 29.77 ? C1' DIO 203 A 1 
HETATM 4 C C2' DIO . . . D 4 -8.858 1.567 7.173 1 24.86 ? C2' DIO 203 A 1 
HETATM 5 O O1 DIO . . . D 4 -10.362 3.362 6.669 1 19.71 ? O1 DIO 203 A 1 
HETATM 6 O O1' DIO . . . D 4 -8.933 1.997 8.528 1 32.74 ? O1' DIO 203 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#