data_8FQJ
#
_model_server_result.job_id            C8QKvi9X8Ce9YZqlYdwkGg 
_model_server_result.datetime_utc      '2025-07-14 14:19:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fqj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    8FQJ 
#
_exptl.entry_id    8FQJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1060.876 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2S,3R,4R)-2,3,4-trihydroxy-5-[(1R,3S,3aS,13R)-1-hydroxy-10,11-dimethyl-3-{4-[(5-methyl-1,3,4-thiadiazol-2-yl)carbamoyl]phenyl}-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FQJ 
_cell.length_a            118.883 
_cell.length_b            179.34 
_cell.length_c            233.389 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FQJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H46 N12 O17 P2 S' 
_chem_comp.formula_weight    1060.876 
_chem_comp.id                Y66 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2S,3R,4R)-2,3,4-trihydroxy-5-[(1R,3S,3aS,13R)-1-hydroxy-10,11-dimethyl-3-{4-[(5-methyl-1,3,4-thiadiazol-2-yl)carbamoyl]phenyl}-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 Y66 sing 374 n n 
C14 C13 Y66 doub 375 n y 
C14 C16 Y66 sing 376 n y 
C13 C12 Y66 sing 377 n y 
O2 C11 Y66 sing 378 n n 
C11 C10 Y66 sing 379 n n 
C11 N4 Y66 sing 380 n n 
C10 C9 Y66 sing 381 n n 
C17 C16 Y66 sing 382 n n 
C16 C18 Y66 doub 383 n y 
C12 N4 Y66 sing 384 n n 
C12 C19 Y66 doub 385 n y 
N4 C38 Y66 sing 386 n n 
O17 C37 Y66 doub 387 n n 
C9 C38 Y66 sing 388 n n 
C9 C8 Y66 sing 389 n n 
C18 C19 Y66 sing 390 n y 
C19 N5 Y66 sing 391 n n 
C38 C37 Y66 sing 392 n n 
C38 C35 Y66 sing 393 n n 
C7 C8 Y66 doub 394 n y 
C7 C6 Y66 sing 395 n y 
C37 N12 Y66 sing 396 n n 
C8 C39 Y66 sing 397 n y 
C6 C5 Y66 doub 398 n y 
C39 C40 Y66 doub 399 n y 
N5 C35 Y66 sing 400 n n 
N5 C20 Y66 sing 401 n n 
C35 N11 Y66 doub 402 n n 
N12 C36 Y66 sing 403 n n 
C5 C40 Y66 sing 404 n y 
C5 C4 Y66 sing 405 n n 
O3 C21 Y66 sing 406 n n 
O1 C4 Y66 doub 407 n n 
C20 C21 Y66 sing 408 n n 
N11 C36 Y66 sing 409 n n 
C36 O16 Y66 doub 410 n n 
C4 N3 Y66 sing 411 n n 
C21 C22 Y66 sing 412 n n 
O14 C33 Y66 sing 413 n n 
N2 C3 Y66 doub 414 n y 
N2 N1 Y66 sing 415 n y 
N3 C3 Y66 sing 416 n n 
C3 S1 Y66 sing 417 n y 
C22 C23 Y66 sing 418 n n 
C22 O4 Y66 sing 419 n n 
C33 C34 Y66 sing 420 n n 
C33 C27 Y66 sing 421 n n 
O10 P2 Y66 doub 422 n n 
N1 C2 Y66 doub 423 n y 
C23 O5 Y66 sing 424 n n 
C23 C24 Y66 sing 425 n n 
S1 C2 Y66 sing 426 n y 
C34 O15 Y66 sing 427 n n 
C34 C26 Y66 sing 428 n n 
C28 N7 Y66 doub 429 n y 
C28 N6 Y66 sing 430 n y 
N7 C29 Y66 sing 431 n y 
O11 P2 Y66 sing 432 n n 
C2 C1 Y66 sing 433 n n 
P2 O12 Y66 sing 434 n n 
P2 O9 Y66 sing 435 n n 
N6 C27 Y66 sing 436 n n 
N6 C32 Y66 sing 437 n y 
C27 O13 Y66 sing 438 n n 
C29 C32 Y66 doub 439 n y 
C29 C30 Y66 sing 440 n y 
C24 O6 Y66 sing 441 n n 
C25 C26 Y66 sing 442 n n 
C25 O12 Y66 sing 443 n n 
C32 N10 Y66 sing 444 n y 
N8 C30 Y66 sing 445 n n 
C26 O13 Y66 sing 446 n n 
C30 N9 Y66 doub 447 n y 
O6 P1 Y66 sing 448 n n 
O9 P1 Y66 sing 449 n n 
N10 C31 Y66 doub 450 n y 
N9 C31 Y66 sing 451 n y 
P1 O7 Y66 doub 452 n n 
P1 O8 Y66 sing 453 n n 
C6 H1 Y66 sing 454 n n 
C11 H2 Y66 sing 455 n n 
C7 H3 Y66 sing 456 n n 
C9 H4 Y66 sing 457 n n 
C10 H5 Y66 sing 458 n n 
C10 H6 Y66 sing 459 n n 
C13 H7 Y66 sing 460 n n 
N3 H11 Y66 sing 461 n n 
C1 H12 Y66 sing 462 n n 
C1 H13 Y66 sing 463 n n 
C1 H14 Y66 sing 464 n n 
C15 H15 Y66 sing 465 n n 
C15 H16 Y66 sing 466 n n 
C15 H17 Y66 sing 467 n n 
C17 H18 Y66 sing 468 n n 
C17 H19 Y66 sing 469 n n 
C17 H20 Y66 sing 470 n n 
C18 H21 Y66 sing 471 n n 
C20 H23 Y66 sing 472 n n 
C20 H24 Y66 sing 473 n n 
C21 H25 Y66 sing 474 n n 
C22 H26 Y66 sing 475 n n 
C23 H27 Y66 sing 476 n n 
C24 H28 Y66 sing 477 n n 
C24 H29 Y66 sing 478 n n 
C25 H30 Y66 sing 479 n n 
C25 H31 Y66 sing 480 n n 
C26 H32 Y66 sing 481 n n 
C27 H33 Y66 sing 482 n n 
C28 H34 Y66 sing 483 n n 
C31 H35 Y66 sing 484 n n 
C33 H36 Y66 sing 485 n n 
C34 H37 Y66 sing 486 n n 
C39 H39 Y66 sing 487 n n 
C40 H40 Y66 sing 488 n n 
N12 H42 Y66 sing 489 n n 
N8 H43 Y66 sing 490 n n 
N8 H44 Y66 sing 491 n n 
O11 H45 Y66 sing 492 n n 
O14 H46 Y66 sing 493 n n 
O15 H47 Y66 sing 494 n n 
O2 H48 Y66 sing 495 n n 
O3 H49 Y66 sing 496 n n 
O4 H50 Y66 sing 497 n n 
O5 H51 Y66 sing 498 n n 
O8 H52 Y66 sing 499 n n 
#
_atom_sites.entry_id                     8FQJ 
_atom_sites.fract_transf_matrix[1][1]    0.008412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005576 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           Y66 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       Y66 
_pdbx_nonpoly_scheme.auth_mon_id      DRG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 Y66 . . . C 3 -3.501 53.293 85.187 1 104.83 ? C4 Y66 901 A 1 
HETATM 2 C C14 Y66 . . . C 3 -6.78 61.309 80.046 1 78.05 ? C14 Y66 901 A 1 
HETATM 3 C C5 Y66 . . . C 3 -4.489 54.055 84.386 1 96.43 ? C5 Y66 901 A 1 
HETATM 4 C C6 Y66 . . . C 3 -4.081 55.063 83.542 1 89.29 ? C6 Y66 901 A 1 
HETATM 5 C C11 Y66 . . . C 3 -7.98 57.549 80.326 1 87.39 ? C11 Y66 901 A 1 
HETATM 6 C C7 Y66 . . . C 3 -5.005 55.758 82.793 1 88.01 ? C7 Y66 901 A 1 
HETATM 7 C C8 Y66 . . . C 3 -6.351 55.483 82.916 1 88.22 ? C8 Y66 901 A 1 
HETATM 8 C C9 Y66 . . . C 3 -7.336 56.266 82.091 1 85.26 ? C9 Y66 901 A 1 
HETATM 9 C C10 Y66 . . . C 3 -6.797 56.716 80.746 1 78.8 ? C10 Y66 901 A 1 
HETATM 10 C C12 Y66 . . . C 3 -7.533 59.534 81.427 1 75.05 ? C12 Y66 901 A 1 
HETATM 11 C C13 Y66 . . . C 3 -7.426 60.118 80.187 1 73.96 ? C13 Y66 901 A 1 
HETATM 12 N N1 Y66 . . . C 3 -2.548 49.626 87.098 1 100.98 ? N1 Y66 901 A 1 
HETATM 13 N N2 Y66 . . . C 3 -2.724 50.672 86.21 1 105.57 ? N2 Y66 901 A 1 
HETATM 14 C C3 Y66 . . . C 3 -3.816 51.287 86.471 1 103.2 ? C3 Y66 901 A 1 
HETATM 15 N N3 Y66 . . . C 3 -3.988 52.579 86.23 1 104.96 ? N3 Y66 901 A 1 
HETATM 16 C C1 Y66 . . . C 3 -3.635 48.573 89.019 1 86.56 ? C1 Y66 901 A 1 
HETATM 17 C C15 Y66 . . . C 3 -6.647 61.94 78.695 1 68.15 ? C15 Y66 901 A 1 
HETATM 18 C C16 Y66 . . . C 3 -6.244 61.945 81.205 1 77.43 ? C16 Y66 901 A 1 
HETATM 19 C C17 Y66 . . . C 3 -5.532 63.255 81.064 1 58.58 ? C17 Y66 901 A 1 
HETATM 20 C C18 Y66 . . . C 3 -6.373 61.344 82.43 1 75.32 ? C18 Y66 901 A 1 
HETATM 21 C C19 Y66 . . . C 3 -7.035 60.129 82.549 1 74.76 ? C19 Y66 901 A 1 
HETATM 22 C C2 Y66 . . . C 3 -3.59 49.445 87.812 1 98.38 ? C2 Y66 901 A 1 
HETATM 23 C C20 Y66 . . . C 3 -6.616 60.067 85.01 1 70.29 ? C20 Y66 901 A 1 
HETATM 24 C C21 Y66 . . . C 3 -6.931 61.518 85.225 1 64.66 ? C21 Y66 901 A 1 
HETATM 25 C C22 Y66 . . . C 3 -6.894 61.852 86.712 1 63.98 ? C22 Y66 901 A 1 
HETATM 26 C C23 Y66 . . . C 3 -7.293 63.268 87.099 1 64.17 ? C23 Y66 901 A 1 
HETATM 27 C C24 Y66 . . . C 3 -6.801 63.638 88.474 1 64.1 ? C24 Y66 901 A 1 
HETATM 28 C C25 Y66 . . . C 3 -6.117 70.054 88.603 1 57.91 ? C25 Y66 901 A 1 
HETATM 29 C C26 Y66 . . . C 3 -6.851 71.35 88.729 1 54.87 ? C26 Y66 901 A 1 
HETATM 30 C C27 Y66 . . . C 3 -6.131 73.423 88.142 1 58.92 ? C27 Y66 901 A 1 
HETATM 31 C C28 Y66 . . . C 3 -3.761 74.036 87.523 1 54.89 ? C28 Y66 901 A 1 
HETATM 32 C C29 Y66 . . . C 3 -3.622 75.952 88.373 1 59.87 ? C29 Y66 901 A 1 
HETATM 33 C C30 Y66 . . . C 3 -3.287 77.223 88.833 1 54.57 ? C30 Y66 901 A 1 
HETATM 34 C C31 Y66 . . . C 3 -5.408 77.346 89.697 1 53.18 ? C31 Y66 901 A 1 
HETATM 35 C C32 Y66 . . . C 3 -4.888 75.512 88.643 1 56.84 ? C32 Y66 901 A 1 
HETATM 36 C C33 Y66 . . . C 3 -6.519 72.731 86.86 1 59.43 ? C33 Y66 901 A 1 
HETATM 37 C C34 Y66 . . . C 3 -7.574 71.828 87.47 1 58 ? C34 Y66 901 A 1 
HETATM 38 C C35 Y66 . . . C 3 -7.775 58.276 83.866 1 73.88 ? C35 Y66 901 A 1 
HETATM 39 C C36 Y66 . . . C 3 -9.118 57.099 85.159 1 76.5 ? C36 Y66 901 A 1 
HETATM 40 C C37 Y66 . . . C 3 -9.535 57.014 82.869 1 79.44 ? C37 Y66 901 A 1 
HETATM 41 C C38 Y66 . . . C 3 -8.134 57.494 82.639 1 80.94 ? C38 Y66 901 A 1 
HETATM 42 C C39 Y66 . . . C 3 -6.757 54.464 83.754 1 87.81 ? C39 Y66 901 A 1 
HETATM 43 C C40 Y66 . . . C 3 -5.833 53.76 84.495 1 92.95 ? C40 Y66 901 A 1 
HETATM 44 N N10 Y66 . . . C 3 -5.841 76.166 89.303 1 55.12 ? N10 Y66 901 A 1 
HETATM 45 N N11 Y66 . . . C 3 -8.074 57.846 85.03 1 73.31 ? N11 Y66 901 A 1 
HETATM 46 N N12 Y66 . . . C 3 -9.843 56.665 84.112 1 82.2 ? N12 Y66 901 A 1 
HETATM 47 N N4 Y66 . . . C 3 -8.201 58.366 81.484 1 83.04 ? N4 Y66 901 A 1 
HETATM 48 N N5 Y66 . . . C 3 -7.188 59.474 83.783 1 74.37 ? N5 Y66 901 A 1 
HETATM 49 N N6 Y66 . . . C 3 -4.971 74.279 88.09 1 56.22 ? N6 Y66 901 A 1 
HETATM 50 N N7 Y66 . . . C 3 -2.918 75.011 87.662 1 52.63 ? N7 Y66 901 A 1 
HETATM 51 N N8 Y66 . . . C 3 -2.107 77.776 88.647 1 52.63 ? N8 Y66 901 A 1 
HETATM 52 N N9 Y66 . . . C 3 -4.214 77.901 89.519 1 50.89 ? N9 Y66 901 A 1 
HETATM 53 O O1 Y66 . . . C 3 -2.305 53.344 84.952 1 103.4 ? O1 Y66 901 A 1 
HETATM 54 O O10 Y66 . . . C 3 -5.7 67.999 87.014 1 60.37 ? O10 Y66 901 A 1 
HETATM 55 O O11 Y66 . . . C 3 -7.95 67.023 87.693 1 56.7 -1 O11 Y66 901 A 1 
HETATM 56 O O12 Y66 . . . C 3 -7.055 69.014 88.75 1 63.21 ? O12 Y66 901 A 1 
HETATM 57 O O13 Y66 . . . C 3 -5.868 72.36 88.998 1 57.37 ? O13 Y66 901 A 1 
HETATM 58 O O14 Y66 . . . C 3 -7.099 73.641 85.967 1 62.08 ? O14 Y66 901 A 1 
HETATM 59 O O15 Y66 . . . C 3 -8.643 72.677 87.848 1 59.2 ? O15 Y66 901 A 1 
HETATM 60 O O16 Y66 . . . C 3 -9.473 56.785 86.258 1 66.38 ? O16 Y66 901 A 1 
HETATM 61 O O17 Y66 . . . C 3 -10.348 56.938 81.972 1 77.02 ? O17 Y66 901 A 1 
HETATM 62 O O2 Y66 . . . C 3 -9.116 56.761 80.212 1 87.3 ? O2 Y66 901 A 1 
HETATM 63 O O3 Y66 . . . C 3 -8.214 61.709 84.797 1 67.5 ? O3 Y66 901 A 1 
HETATM 64 O O4 Y66 . . . C 3 -5.602 61.699 87.144 1 63.09 ? O4 Y66 901 A 1 
HETATM 65 O O5 Y66 . . . C 3 -8.706 63.347 87.126 1 65.97 ? O5 Y66 901 A 1 
HETATM 66 O O6 Y66 . . . C 3 -7.345 64.891 88.944 1 62.51 ? O6 Y66 901 A 1 
HETATM 67 O O7 Y66 . . . C 3 -5.302 64.988 90.346 1 53.35 ? O7 Y66 901 A 1 
HETATM 68 O O8 Y66 . . . C 3 -7.447 66.044 91.109 1 64.76 -1 O8 Y66 901 A 1 
HETATM 69 O O9 Y66 . . . C 3 -6.072 66.93 89.198 1 56.57 ? O9 Y66 901 A 1 
HETATM 70 P P1 Y66 . . . C 3 -6.536 65.691 90.022 1 60.8 ? P1 Y66 901 A 1 
HETATM 71 P P2 Y66 . . . C 3 -6.709 67.705 88.014 1 56.01 ? P2 Y66 901 A 1 
HETATM 72 S S1 Y66 . . . C 3 -4.945 50.327 87.252 1 109.42 ? S1 Y66 901 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           72 
#