data_8FRW # _model_server_result.job_id O0bjlNsHhmUMgHyRoasXPg _model_server_result.datetime_utc '2024-10-10 22:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8frw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":501}' # _entry.id 8FRW # _exptl.entry_id 8FRW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 310.393 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(1R,3S,5R)-1-azabicyclo[3.2.2]nonan-3-yl]-1,3,4,5-tetrahydro-6H-azepino[5,4,3-cd]indazol-6-one _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FRW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 N N N ? 3 R N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 210 A CYS 135 1_555 A SG CYS 224 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 210 B CYS 135 1_555 B SG CYS 224 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 210 C CYS 135 1_555 C SG CYS 224 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 210 D CYS 135 1_555 D SG CYS 224 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 210 E CYS 135 1_555 E SG CYS 224 E CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 157 A ASN 82 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 223 A ASN 148 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 239 A ASN 164 1_555 H C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 B ND2 ASN 157 B ASN 82 1_555 K C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 223 B ASN 148 1_555 L C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 B ND2 ASN 239 B ASN 164 1_555 M C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 C ND2 ASN 157 C ASN 82 1_555 O C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 C ND2 ASN 223 C ASN 148 1_555 P C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 C ND2 ASN 239 C ASN 164 1_555 Q C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 D ND2 ASN 157 D ASN 82 1_555 S C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 D ND2 ASN 223 D ASN 148 1_555 T C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 D ND2 ASN 239 D ASN 164 1_555 U C1 NAG . D NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 E ND2 ASN 157 E ASN 82 1_555 W C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 E ND2 ASN 223 E ASN 148 1_555 X C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 E ND2 ASN 239 E ASN 164 1_555 Y C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C18 H22 N4 O' _chem_comp.formula_weight 310.393 _chem_comp.id Y7H _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(1R,3S,5R)-1-azabicyclo[3.2.2]nonan-3-yl]-1,3,4,5-tetrahydro-6H-azepino[5,4,3-cd]indazol-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N4 Y7H sing 406 n n C18 C11 Y7H sing 407 n n N4 C15 Y7H sing 408 n n N4 C16 Y7H sing 409 n n C15 C14 Y7H sing 410 n n C10 N3 Y7H sing 411 n n C10 C9 Y7H sing 412 n n C16 C17 Y7H sing 413 n n C11 N3 Y7H sing 414 n n C11 C12 Y7H sing 415 n n N3 C1 Y7H sing 416 n n C9 C7 Y7H sing 417 n n C14 C13 Y7H sing 418 n n C7 N2 Y7H doub 419 n y C7 C8 Y7H sing 420 n y N2 N1 Y7H sing 421 n y C1 C2 Y7H sing 422 n n C1 O1 Y7H doub 423 n n C8 C2 Y7H doub 424 n y C8 C6 Y7H sing 425 n y N1 C6 Y7H sing 426 n y C2 C3 Y7H sing 427 n y C6 C5 Y7H doub 428 n y C12 C13 Y7H sing 429 n n C3 C4 Y7H doub 430 n y C5 C4 Y7H sing 431 n y C13 C17 Y7H sing 432 n n C18 H1 Y7H sing 433 n n C18 H2 Y7H sing 434 n n C3 H3 Y7H sing 435 n n C4 H4 Y7H sing 436 n n C5 H5 Y7H sing 437 n n C9 H6 Y7H sing 438 n n C9 H7 Y7H sing 439 n n C10 H8 Y7H sing 440 n n C10 H9 Y7H sing 441 n n C11 H10 Y7H sing 442 n n C12 H11 Y7H sing 443 n n C12 H12 Y7H sing 444 n n C13 H13 Y7H sing 445 n n C14 H14 Y7H sing 446 n n C14 H15 Y7H sing 447 n n C15 H16 Y7H sing 448 n n C15 H17 Y7H sing 449 n n C16 H18 Y7H sing 450 n n C16 H19 Y7H sing 451 n n C17 H20 Y7H sing 452 n n C17 H21 Y7H sing 453 n n N1 H22 Y7H sing 454 n n # _atom_sites.entry_id 8FRW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 501 502 NAG NAG . G 2 NAG A 1 502 503 NAG NAG . H 2 NAG A 1 503 504 NAG NAG . I 3 Y7H A 1 504 501 Y7H SPR . J 3 Y7H B 1 501 501 Y7H SPR . K 2 NAG B 1 502 502 NAG NAG . L 2 NAG B 1 503 503 NAG NAG . M 2 NAG B 1 504 504 NAG NAG . N 3 Y7H C 1 501 501 Y7H SPR . O 2 NAG C 1 502 502 NAG NAG . P 2 NAG C 1 503 503 NAG NAG . Q 2 NAG C 1 504 504 NAG NAG . R 3 Y7H D 1 501 501 Y7H SPR . S 2 NAG D 1 502 502 NAG NAG . T 2 NAG D 1 503 503 NAG NAG . U 2 NAG D 1 504 504 NAG NAG . V 3 Y7H E 1 501 501 Y7H SPR . W 2 NAG E 1 502 502 NAG NAG . X 2 NAG E 1 503 503 NAG NAG . Y 2 NAG E 1 504 504 NAG NAG . Z 4 HOH A 1 601 2 HOH HOH . AA 4 HOH B 1 601 3 HOH HOH . BA 4 HOH C 1 601 4 HOH HOH . CA 4 HOH D 1 601 5 HOH HOH . DA 4 HOH E 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 Y7H . . . V 3 147.747 184.372 127.118 1 52.69 ? C18 Y7H 501 E 1 HETATM 2 C C1 Y7H . . . V 3 149.734 186.61 129.008 1 52.69 ? C1 Y7H 501 E 1 HETATM 3 C C2 Y7H . . . V 3 150.466 187.872 129.145 1 52.69 ? C2 Y7H 501 E 1 HETATM 4 C C3 Y7H . . . V 3 151.812 187.839 129.372 1 52.69 ? C3 Y7H 501 E 1 HETATM 5 C C4 Y7H . . . V 3 152.558 188.993 129.515 1 52.69 ? C4 Y7H 501 E 1 HETATM 6 C C5 Y7H . . . V 3 151.99 190.217 129.432 1 52.69 ? C5 Y7H 501 E 1 HETATM 7 C C6 Y7H . . . V 3 150.631 190.272 129.208 1 52.69 ? C6 Y7H 501 E 1 HETATM 8 C C7 Y7H . . . V 3 148.573 189.575 128.855 1 52.69 ? C7 Y7H 501 E 1 HETATM 9 C C8 Y7H . . . V 3 149.876 189.13 129.067 1 52.69 ? C8 Y7H 501 E 1 HETATM 10 C C9 Y7H . . . V 3 147.415 188.694 128.652 1 52.69 ? C9 Y7H 501 E 1 HETATM 11 C C10 Y7H . . . V 3 147.708 187.468 127.844 1 52.69 ? C10 Y7H 501 E 1 HETATM 12 C C11 Y7H . . . V 3 148.01 185.068 128.43 1 52.69 ? C11 Y7H 501 E 1 HETATM 13 C C12 Y7H . . . V 3 146.756 185.04 129.275 1 52.69 ? C12 Y7H 501 E 1 HETATM 14 C C13 Y7H . . . V 3 146.139 183.715 129.656 1 52.69 ? C13 Y7H 501 E 1 HETATM 15 C C14 Y7H . . . V 3 145.108 183.311 128.657 1 52.69 ? C14 Y7H 501 E 1 HETATM 16 C C15 Y7H . . . V 3 145.715 183.049 127.314 1 52.69 ? C15 Y7H 501 E 1 HETATM 17 C C16 Y7H . . . V 3 147.707 182.272 128.399 1 52.69 ? C16 Y7H 501 E 1 HETATM 18 C C17 Y7H . . . V 3 147.116 182.588 129.733 1 52.69 ? C17 Y7H 501 E 1 HETATM 19 O O1 Y7H . . . V 3 150.302 185.662 129.461 1 52.69 ? O1 Y7H 501 E 1 HETATM 20 N N1 Y7H . . . V 3 149.799 191.299 129.085 1 52.69 ? N1 Y7H 501 E 1 HETATM 21 N N2 Y7H . . . V 3 148.546 190.876 128.87 1 52.69 ? N2 Y7H 501 E 1 HETATM 22 N N3 Y7H . . . V 3 148.546 186.439 128.449 1 52.69 ? N3 Y7H 501 E 1 HETATM 23 N N4 Y7H . . . V 3 147.161 183.059 127.309 1 52.69 ? N4 Y7H 501 E 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #