data_8FRX
#
_model_server_result.job_id            baQWLxajQMs8W0YcG8uo2g 
_model_server_result.datetime_utc      '2024-10-10 18:24:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8frx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8FRX 
#
_exptl.entry_id    8FRX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              296.367 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(1R,3S,4R)-1-azabicyclo[2.2.2]octan-3-yl]-1,3,4,5-tetrahydro-6H-azepino[5,4,3-cd]indazol-6-one 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FRX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 210 A CYS 135 1_555 A SG CYS 224 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 210 B CYS 135 1_555 B SG CYS 224 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 210 C CYS 135 1_555 C SG CYS 224 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 210 D CYS 135 1_555 D SG CYS 224 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 E SG CYS 210 E CYS 135 1_555 E SG CYS 224 E CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 157 A ASN 82 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A ND2 ASN 223 A ASN 148 1_555 H C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 A ND2 ASN 239 A ASN 164 1_555 I C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 B ND2 ASN 157 B ASN 82 1_555 K C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 B ND2 ASN 223 B ASN 148 1_555 L C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale6 B ND2 ASN 239 B ASN 164 1_555 M C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale7 C ND2 ASN 157 C ASN 82 1_555 O C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale8 C ND2 ASN 223 C ASN 148 1_555 P C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale9 C ND2 ASN 239 C ASN 164 1_555 Q C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale10 D ND2 ASN 157 D ASN 82 1_555 S C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale11 D ND2 ASN 223 D ASN 148 1_555 T C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale12 D ND2 ASN 239 D ASN 164 1_555 U C1 NAG . D NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale13 E ND2 ASN 157 E ASN 82 1_555 W C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale14 E ND2 ASN 223 E ASN 148 1_555 X C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale15 E ND2 ASN 239 E ASN 164 1_555 Y C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C17 H20 N4 O' 
_chem_comp.formula_weight    296.367 
_chem_comp.id                Y82 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(1R,3S,4R)-1-azabicyclo[2.2.2]octan-3-yl]-1,3,4,5-tetrahydro-6H-azepino[5,4,3-cd]indazol-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 N4 Y82 sing 404 n n 
C17 C16 Y82 sing 405 n n 
N4 C12 Y82 sing 406 n n 
N4 C13 Y82 sing 407 n n 
C12 C11 Y82 sing 408 n n 
C9 C7 Y82 sing 409 n n 
C9 C10 Y82 sing 410 n n 
C13 C14 Y82 sing 411 n n 
N2 C7 Y82 doub 412 n y 
N2 N1 Y82 sing 413 n y 
C16 C15 Y82 sing 414 n n 
C7 C8 Y82 sing 415 n y 
O1 C1 Y82 doub 416 n n 
N1 C6 Y82 sing 417 n y 
C11 N3 Y82 sing 418 n n 
C11 C15 Y82 sing 419 n n 
C8 C6 Y82 doub 420 n y 
C8 C2 Y82 sing 421 n y 
C1 N3 Y82 sing 422 n n 
C1 C2 Y82 sing 423 n n 
N3 C10 Y82 sing 424 n n 
C6 C5 Y82 sing 425 n y 
C2 C3 Y82 doub 426 n y 
C5 C4 Y82 doub 427 n y 
C3 C4 Y82 sing 428 n y 
C15 C14 Y82 sing 429 n n 
C5 H1 Y82 sing 430 n n 
N1 H2 Y82 sing 431 n n 
C4 H3 Y82 sing 432 n n 
C10 H5 Y82 sing 433 n n 
C10 H6 Y82 sing 434 n n 
C11 H7 Y82 sing 435 n n 
C12 H8 Y82 sing 436 n n 
C12 H9 Y82 sing 437 n n 
C13 H10 Y82 sing 438 n n 
C13 H11 Y82 sing 439 n n 
C14 H12 Y82 sing 440 n n 
C14 H13 Y82 sing 441 n n 
C15 H14 Y82 sing 442 n n 
C16 H15 Y82 sing 443 n n 
C16 H16 Y82 sing 444 n n 
C17 H17 Y82 sing 445 n n 
C17 H18 Y82 sing 446 n n 
C3 H19 Y82 sing 447 n n 
C9 H20 Y82 sing 448 n n 
C9 H21 Y82 sing 449 n n 
#
_atom_sites.entry_id                     8FRX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 Y82 A 1 501 501 Y82 SMP . 
G 3 NAG A 1 502 502 NAG NAG . 
H 3 NAG A 1 503 503 NAG NAG . 
I 3 NAG A 1 504 504 NAG NAG . 
J 2 Y82 B 1 501 501 Y82 SMP . 
K 3 NAG B 1 502 502 NAG NAG . 
L 3 NAG B 1 503 503 NAG NAG . 
M 3 NAG B 1 504 504 NAG NAG . 
N 2 Y82 C 1 501 501 Y82 SMP . 
O 3 NAG C 1 502 502 NAG NAG . 
P 3 NAG C 1 503 503 NAG NAG . 
Q 3 NAG C 1 504 504 NAG NAG . 
R 2 Y82 D 1 501 501 Y82 SMP . 
S 3 NAG D 1 502 502 NAG NAG . 
T 3 NAG D 1 503 503 NAG NAG . 
U 3 NAG D 1 504 504 NAG NAG . 
V 2 Y82 E 1 501 501 Y82 SMP . 
W 3 NAG E 1 502 502 NAG NAG . 
X 3 NAG E 1 503 503 NAG NAG . 
Y 3 NAG E 1 504 504 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 Y82 . . . F 2 110.191 130.063 103.186 1 52.12 ? C8 Y82 501 A 1 
HETATM 2 C C5 Y82 . . . F 2 109.458 132.347 103.725 1 52.12 ? C5 Y82 501 A 1 
HETATM 3 C C6 Y82 . . . F 2 109.175 131.033 103.351 1 52.12 ? C6 Y82 501 A 1 
HETATM 4 N N1 Y82 . . . F 2 107.998 130.374 103.066 1 52.12 ? N1 Y82 501 A 1 
HETATM 5 C C2 Y82 . . . F 2 111.546 130.382 103.4 1 52.12 ? C2 Y82 501 A 1 
HETATM 6 N N3 Y82 . . . F 2 112.596 128.08 103.329 1 52.12 ? N3 Y82 501 A 1 
HETATM 7 C C4 Y82 . . . F 2 110.8 132.655 103.932 1 52.12 ? C4 Y82 501 A 1 
HETATM 8 N N2 Y82 . . . F 2 108.209 129.088 102.743 1 52.12 ? N2 Y82 501 A 1 
HETATM 9 N N4 Y82 . . . F 2 115.073 125.845 101.458 1 52.12 ? N4 Y82 501 A 1 
HETATM 10 C C7 Y82 . . . F 2 109.5 128.886 102.806 1 52.12 ? C7 Y82 501 A 1 
HETATM 11 C C1 Y82 . . . F 2 112.75 129.451 103.257 1 52.12 ? C1 Y82 501 A 1 
HETATM 12 C C10 Y82 . . . F 2 111.307 127.394 103.565 1 52.12 ? C10 Y82 501 A 1 
HETATM 13 C C11 Y82 . . . F 2 113.83 127.247 103.176 1 52.12 ? C11 Y82 501 A 1 
HETATM 14 C C12 Y82 . . . F 2 114.392 127.209 101.721 1 52.12 ? C12 Y82 501 A 1 
HETATM 15 C C13 Y82 . . . F 2 116.093 125.535 102.573 1 52.12 ? C13 Y82 501 A 1 
HETATM 16 C C14 Y82 . . . F 2 115.331 125.4 103.91 1 52.12 ? C14 Y82 501 A 1 
HETATM 17 C C15 Y82 . . . F 2 113.83 125.8 103.787 1 52.12 ? C15 Y82 501 A 1 
HETATM 18 C C16 Y82 . . . F 2 113.268 124.74 102.788 1 52.12 ? C16 Y82 501 A 1 
HETATM 19 C C17 Y82 . . . F 2 114.014 124.726 101.432 1 52.12 ? C17 Y82 501 A 1 
HETATM 20 C C3 Y82 . . . F 2 111.81 131.712 103.774 1 52.12 ? C3 Y82 501 A 1 
HETATM 21 C C9 Y82 . . . F 2 110.192 127.587 102.527 1 52.12 ? C9 Y82 501 A 1 
HETATM 22 O O1 Y82 . . . F 2 113.847 129.987 103.065 1 52.12 ? O1 Y82 501 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#