data_8FSB
#
_model_server_result.job_id            sql1qLrfltA1f9Hr4UyChg 
_model_server_result.datetime_utc      '2024-10-10 19:26:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fsb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    8FSB 
#
_exptl.entry_id    8FSB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              176.215 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SEROTONIN 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FSB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FSB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 N N N 
? 3 R N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 210 A CYS 135 1_555 A SG CYS 224 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 210 B CYS 135 1_555 B SG CYS 224 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 210 C CYS 135 1_555 C SG CYS 224 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 210 D CYS 135 1_555 D SG CYS 224 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 E SG CYS 210 E CYS 135 1_555 E SG CYS 224 E CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 157 A ASN 82 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 A ND2 ASN 223 A ASN 148 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale3 A ND2 ASN 239 A ASN 164 1_555 H C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale4 B ND2 ASN 157 B ASN 82 1_555 K C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 B ND2 ASN 223 B ASN 148 1_555 L C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale6 B ND2 ASN 239 B ASN 164 1_555 M C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale7 C ND2 ASN 157 C ASN 82 1_555 O C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale8 C ND2 ASN 223 C ASN 148 1_555 P C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale9 C ND2 ASN 239 C ASN 164 1_555 Q C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale10 D ND2 ASN 157 D ASN 82 1_555 S C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale11 D ND2 ASN 223 D ASN 148 1_555 T C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale12 D ND2 ASN 239 D ASN 164 1_555 U C1 NAG . D NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale13 E ND2 ASN 157 E ASN 82 1_555 W C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale14 E ND2 ASN 223 E ASN 148 1_555 X C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale15 E ND2 ASN 239 E ASN 164 1_555 Y C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
#
_chem_comp.formula           'C10 H12 N2 O' 
_chem_comp.formula_weight    176.215 
_chem_comp.id                SRO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SEROTONIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-(2-AMINOETHYL)-1H-INDOL-5-OL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH CZ3 SRO sing 318 n n 
OH HOH SRO sing 319 n n 
CZ3 CE3 SRO doub 320 n y 
CZ3 CH2 SRO sing 321 n y 
CH2 CZ2 SRO doub 322 n y 
CH2 HH2 SRO sing 323 n n 
CZ2 CE2 SRO sing 324 n y 
CZ2 HZ2 SRO sing 325 n n 
CE2 NE1 SRO sing 326 n y 
CE2 CD2 SRO doub 327 n y 
NE1 CD1 SRO sing 328 n y 
NE1 HNE1 SRO sing 329 n n 
CD1 CG SRO doub 330 n y 
CD1 HD1 SRO sing 331 n n 
CG CB SRO sing 332 n n 
CG CD2 SRO sing 333 n y 
CD2 CE3 SRO sing 334 n y 
CE3 HE3 SRO sing 335 n n 
CB CA SRO sing 336 n n 
CB HB1 SRO sing 337 n n 
CB HB2 SRO sing 338 n n 
CA NZ SRO sing 339 n n 
CA HA1 SRO sing 340 n n 
CA HA2 SRO sing 341 n n 
NZ HNZ1 SRO sing 342 n n 
NZ HNZ2 SRO sing 343 n n 
#
_atom_sites.entry_id                     8FSB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 502 NAG NAG . 
G 2 NAG A 1 502 503 NAG NAG . 
H 2 NAG A 1 503 504 NAG NAG . 
I 3 SRO A 1 504 501 SRO SRO . 
J 3 SRO B 1 501 501 SRO SRO . 
K 2 NAG B 1 502 502 NAG NAG . 
L 2 NAG B 1 503 503 NAG NAG . 
M 2 NAG B 1 504 504 NAG NAG . 
N 3 SRO C 1 501 501 SRO SRO . 
O 2 NAG C 1 502 502 NAG NAG . 
P 2 NAG C 1 503 503 NAG NAG . 
Q 2 NAG C 1 504 504 NAG NAG . 
R 3 SRO D 1 501 501 SRO SRO . 
S 2 NAG D 1 502 502 NAG NAG . 
T 2 NAG D 1 503 503 NAG NAG . 
U 2 NAG D 1 504 504 NAG NAG . 
V 3 SRO E 1 501 501 SRO SRO . 
W 2 NAG E 1 502 502 NAG NAG . 
X 2 NAG E 1 503 503 NAG NAG . 
Y 2 NAG E 1 504 504 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH SRO . . . J 3 180.4 147.519 199.1 1 45.23 ? OH SRO 501 B 1 
HETATM 2 C CZ3 SRO . . . J 3 181.008 146.3 199.099 1 45.23 ? CZ3 SRO 501 B 1 
HETATM 3 C CH2 SRO . . . J 3 182.412 146.268 199.1 1 45.23 ? CH2 SRO 501 B 1 
HETATM 4 C CZ2 SRO . . . J 3 183.093 145.076 199.101 1 45.23 ? CZ2 SRO 501 B 1 
HETATM 5 C CE2 SRO . . . J 3 182.345 143.905 199.103 1 45.23 ? CE2 SRO 501 B 1 
HETATM 6 N NE1 SRO . . . J 3 182.748 142.596 199.1 1 45.23 ? NE1 SRO 501 B 1 
HETATM 7 C CD1 SRO . . . J 3 181.643 141.791 199.097 1 45.23 ? CD1 SRO 501 B 1 
HETATM 8 C CG SRO . . . J 3 180.506 142.544 199.106 1 45.23 ? CG SRO 501 B 1 
HETATM 9 C CD2 SRO . . . J 3 180.94 143.917 199.099 1 45.23 ? CD2 SRO 501 B 1 
HETATM 10 C CE3 SRO . . . J 3 180.271 145.152 199.097 1 45.23 ? CE3 SRO 501 B 1 
HETATM 11 C CB SRO . . . J 3 179.091 142.049 199.092 1 45.23 ? CB SRO 501 B 1 
HETATM 12 C CA SRO . . . J 3 178.186 142.686 200.134 1 45.23 ? CA SRO 501 B 1 
HETATM 13 N NZ SRO . . . J 3 176.819 142.178 200.024 1 45.23 ? NZ SRO 501 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#