data_8FSK
#
_model_server_result.job_id            OGpW2-vAyk7vjBnvmVWbzA 
_model_server_result.datetime_utc      '2024-10-12 16:37:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fsk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    8FSK 
#
_exptl.entry_id    8FSK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1038.846 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,13R)-3-(3-benzamidophenyl)-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FSK 
_cell.length_a            119.391 
_cell.length_b            179.911 
_cell.length_c            235.331 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C43 H48 N10 O17 P2' 
_chem_comp.formula_weight    1038.846 
_chem_comp.id                YAO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,13R)-3-(3-benzamidophenyl)-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 YAO sing 374 n n 
C7 C6 YAO doub 375 n y 
C7 C2 YAO sing 376 n y 
O1 C9 YAO sing 377 n n 
C6 C5 YAO sing 378 n y 
C9 C10 YAO sing 379 n n 
C9 N1 YAO sing 380 n n 
C1 C2 YAO sing 381 n n 
C10 C11 YAO sing 382 n n 
C2 C3 YAO doub 383 n y 
C5 N1 YAO sing 384 n n 
C5 C4 YAO doub 385 n y 
N1 C25 YAO sing 386 n n 
O3 C26 YAO doub 387 n n 
C11 C25 YAO sing 388 n n 
C11 C12 YAO sing 389 n n 
C3 C4 YAO sing 390 n y 
C4 N5 YAO sing 391 n n 
C25 C26 YAO sing 392 n n 
C25 C28 YAO sing 393 n n 
C26 N3 YAO sing 394 n n 
C12 C24 YAO doub 395 n y 
C12 C13 YAO sing 396 n y 
C24 C16 YAO sing 397 n y 
C13 C14 YAO doub 398 n y 
N5 C28 YAO sing 399 n n 
N5 C29 YAO sing 400 n n 
C28 N4 YAO doub 401 n n 
N3 C27 YAO sing 402 n n 
C16 N2 YAO sing 403 n n 
C16 C15 YAO doub 404 n y 
C14 C15 YAO sing 405 n y 
N2 C17 YAO sing 406 n n 
O5 C30 YAO sing 407 n n 
C29 C30 YAO sing 408 n n 
N4 C27 YAO sing 409 n n 
C27 O4 YAO doub 410 n n 
C19 C20 YAO doub 411 n y 
C19 C18 YAO sing 412 n y 
C20 C21 YAO sing 413 n y 
C17 C18 YAO sing 414 n n 
C17 O2 YAO doub 415 n n 
C18 C23 YAO doub 416 n y 
C30 C31 YAO sing 417 n n 
O16 C42 YAO sing 418 n n 
C21 C22 YAO doub 419 n y 
C23 C22 YAO sing 420 n y 
C31 O6 YAO sing 421 n n 
C31 C32 YAO sing 422 n n 
O7 C32 YAO sing 423 n n 
C42 C43 YAO sing 424 n n 
C42 C36 YAO sing 425 n n 
O13 P2 YAO doub 426 n n 
C37 N7 YAO doub 427 n y 
C37 N6 YAO sing 428 n y 
C43 O17 YAO sing 429 n n 
C43 C35 YAO sing 430 n n 
C32 C33 YAO sing 431 n n 
N7 C38 YAO sing 432 n y 
O12 P2 YAO sing 433 n n 
C33 O8 YAO sing 434 n n 
P2 O14 YAO sing 435 n n 
P2 O11 YAO sing 436 n n 
N6 C36 YAO sing 437 n n 
N6 C41 YAO sing 438 n y 
C36 O15 YAO sing 439 n n 
C38 C41 YAO doub 440 n y 
C38 C39 YAO sing 441 n y 
N8 C39 YAO sing 442 n n 
C34 C35 YAO sing 443 n n 
C34 O14 YAO sing 444 n n 
C41 N10 YAO sing 445 n y 
C39 N9 YAO doub 446 n y 
C35 O15 YAO sing 447 n n 
O11 P1 YAO sing 448 n n 
O8 P1 YAO sing 449 n n 
N10 C40 YAO doub 450 n y 
N9 C40 YAO sing 451 n y 
P1 O10 YAO doub 452 n n 
P1 O9 YAO sing 453 n n 
C14 H1 YAO sing 454 n n 
C6 H2 YAO sing 455 n n 
C11 H3 YAO sing 456 n n 
C8 H4 YAO sing 457 n n 
C8 H5 YAO sing 458 n n 
C8 H6 YAO sing 459 n n 
C9 H7 YAO sing 460 n n 
C10 H8 YAO sing 461 n n 
C10 H9 YAO sing 462 n n 
C13 H10 YAO sing 463 n n 
N2 H11 YAO sing 464 n n 
C3 H12 YAO sing 465 n n 
N3 H13 YAO sing 466 n n 
C1 H14 YAO sing 467 n n 
C1 H15 YAO sing 468 n n 
C1 H16 YAO sing 469 n n 
C15 H17 YAO sing 470 n n 
C19 H18 YAO sing 471 n n 
C20 H19 YAO sing 472 n n 
C21 H20 YAO sing 473 n n 
C22 H21 YAO sing 474 n n 
C23 H22 YAO sing 475 n n 
C24 H23 YAO sing 476 n n 
C29 H25 YAO sing 477 n n 
C29 H26 YAO sing 478 n n 
C30 H27 YAO sing 479 n n 
C31 H28 YAO sing 480 n n 
C32 H29 YAO sing 481 n n 
C33 H30 YAO sing 482 n n 
C33 H31 YAO sing 483 n n 
C34 H32 YAO sing 484 n n 
C34 H33 YAO sing 485 n n 
C35 H34 YAO sing 486 n n 
C36 H35 YAO sing 487 n n 
C37 H36 YAO sing 488 n n 
C40 H37 YAO sing 489 n n 
C42 H38 YAO sing 490 n n 
C43 H39 YAO sing 491 n n 
N8 H41 YAO sing 492 n n 
N8 H42 YAO sing 493 n n 
O1 H43 YAO sing 494 n n 
O12 H44 YAO sing 495 n n 
O16 H45 YAO sing 496 n n 
O17 H46 YAO sing 497 n n 
O5 H47 YAO sing 498 n n 
O6 H48 YAO sing 499 n n 
O7 H49 YAO sing 500 n n 
O9 H50 YAO sing 501 n n 
#
_atom_sites.entry_id                     8FSK 
_atom_sites.fract_transf_matrix[1][1]    0.008376 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           YAO 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       YAO 
_pdbx_nonpoly_scheme.auth_mon_id      DRG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 YAO . . . C 3 -6.847 60.355 83.213 1 88.67 ? C4 YAO 901 A 1 
HETATM 2 C C14 YAO . . . C 3 -6.761 53.497 85.218 1 99.39 ? C14 YAO 901 A 1 
HETATM 3 C C5 YAO . . . C 3 -7.264 59.7 82.104 1 92.03 ? C5 YAO 901 A 1 
HETATM 4 C C6 YAO . . . C 3 -7.21 60.275 80.863 1 91.17 ? C6 YAO 901 A 1 
HETATM 5 C C11 YAO . . . C 3 -7.168 56.43 82.942 1 94.75 ? C11 YAO 901 A 1 
HETATM 6 C C7 YAO . . . C 3 -6.68 61.514 80.721 1 93.47 ? C7 YAO 901 A 1 
HETATM 7 C C8 YAO . . . C 3 -6.575 62.161 79.381 1 90.85 ? C8 YAO 901 A 1 
HETATM 8 C C9 YAO . . . C 3 -7.414 57.669 81.087 1 95.94 ? C9 YAO 901 A 1 
HETATM 9 C C10 YAO . . . C 3 -6.357 56.819 81.73 1 91.64 ? C10 YAO 901 A 1 
HETATM 10 C C12 YAO . . . C 3 -6.535 55.441 83.87 1 100.2 ? C12 YAO 901 A 1 
HETATM 11 C C13 YAO . . . C 3 -7.315 54.43 84.376 1 96.57 ? C13 YAO 901 A 1 
HETATM 12 N N1 YAO . . . C 3 -7.817 58.499 82.159 1 97.34 ? N1 YAO 901 A 1 
HETATM 13 N N2 YAO . . . C 3 -3.266 54.594 85.345 1 105.35 ? N2 YAO 901 A 1 
HETATM 14 C C3 YAO . . . C 3 -6.308 61.615 83.093 1 87.37 ? C3 YAO 901 A 1 
HETATM 15 N N3 YAO . . . C 3 -9.534 56.821 84.75 1 93.62 ? N3 YAO 901 A 1 
HETATM 16 C C1 YAO . . . C 3 -5.628 63.554 81.697 1 81.31 ? C1 YAO 901 A 1 
HETATM 17 C C15 YAO . . . C 3 -5.437 53.566 85.542 1 107.7 ? C15 YAO 901 A 1 
HETATM 18 C C16 YAO . . . C 3 -4.641 54.562 85.019 1 105.5 ? C16 YAO 901 A 1 
HETATM 19 C C17 YAO . . . C 3 -2.626 53.788 86.204 1 114.25 ? C17 YAO 901 A 1 
HETATM 20 C C18 YAO . . . C 3 -1.16 53.97 86.347 1 117.93 ? C18 YAO 901 A 1 
HETATM 21 C C19 YAO . . . C 3 -0.459 55.033 85.82 1 105.07 ? C19 YAO 901 A 1 
HETATM 22 C C2 YAO . . . C 3 -6.216 62.196 81.867 1 91.47 ? C2 YAO 901 A 1 
HETATM 23 C C20 YAO . . . C 3 0.9 55.136 86.026 1 104.94 ? C20 YAO 901 A 1 
HETATM 24 C C21 YAO . . . C 3 1.571 54.182 86.738 1 111.52 ? C21 YAO 901 A 1 
HETATM 25 C C22 YAO . . . C 3 0.887 53.123 87.259 1 120.98 ? C22 YAO 901 A 1 
HETATM 26 C C23 YAO . . . C 3 -0.474 53.013 87.068 1 124.39 ? C23 YAO 901 A 1 
HETATM 27 C C24 YAO . . . C 3 -5.191 55.491 84.161 1 100.5 ? C24 YAO 901 A 1 
HETATM 28 C C25 YAO . . . C 3 -7.831 57.738 83.38 1 93.64 ? C25 YAO 901 A 1 
HETATM 29 C C26 YAO . . . C 3 -9.182 57.162 83.543 1 91.38 ? C26 YAO 901 A 1 
HETATM 30 C C27 YAO . . . C 3 -8.927 57.373 85.809 1 93.14 ? C27 YAO 901 A 1 
HETATM 31 C C28 YAO . . . C 3 -7.59 58.591 84.568 1 89.5 ? C28 YAO 901 A 1 
HETATM 32 C C29 YAO . . . C 3 -6.337 60.379 85.625 1 84.97 ? C29 YAO 901 A 1 
HETATM 33 C C30 YAO . . . C 3 -7.188 61.353 86.356 1 85.73 ? C30 YAO 901 A 1 
HETATM 34 C C31 YAO . . . C 3 -6.391 62.234 87.302 1 81.45 ? C31 YAO 901 A 1 
HETATM 35 C C32 YAO . . . C 3 -7.249 63.065 88.221 1 82.47 ? C32 YAO 901 A 1 
HETATM 36 C C33 YAO . . . C 3 -6.491 64.251 88.753 1 85.93 ? C33 YAO 901 A 1 
HETATM 37 C C34 YAO . . . C 3 -6.096 70.276 89.248 1 76.52 ? C34 YAO 901 A 1 
HETATM 38 C C35 YAO . . . C 3 -6.862 71.55 89.44 1 76.19 ? C35 YAO 901 A 1 
HETATM 39 C C36 YAO . . . C 3 -6.12 73.628 88.89 1 76.41 ? C36 YAO 901 A 1 
HETATM 40 C C37 YAO . . . C 3 -3.902 74.108 88.174 1 76.94 ? C37 YAO 901 A 1 
HETATM 41 C C38 YAO . . . C 3 -3.604 76.034 88.952 1 75.23 ? C38 YAO 901 A 1 
HETATM 42 C C39 YAO . . . C 3 -3.198 77.293 89.367 1 75.27 ? C39 YAO 901 A 1 
HETATM 43 C C40 YAO . . . C 3 -5.25 77.507 90.35 1 72.94 ? C40 YAO 901 A 1 
HETATM 44 C C41 YAO . . . C 3 -4.849 75.641 89.308 1 74.42 ? C41 YAO 901 A 1 
HETATM 45 C C42 YAO . . . C 3 -6.47 72.913 87.617 1 81.43 ? C42 YAO 901 A 1 
HETATM 46 C C43 YAO . . . C 3 -7.585 72.082 88.203 1 82.69 ? C43 YAO 901 A 1 
HETATM 47 N N10 YAO . . . C 3 -5.738 76.337 90.005 1 75.84 ? N10 YAO 901 A 1 
HETATM 48 N N4 YAO . . . C 3 -8.016 58.272 85.722 1 90.76 ? N4 YAO 901 A 1 
HETATM 49 N N5 YAO . . . C 3 -6.957 59.739 84.451 1 86.31 ? N5 YAO 901 A 1 
HETATM 50 N N6 YAO . . . C 3 -4.99 74.393 88.812 1 73.11 ? N6 YAO 901 A 1 
HETATM 51 N N7 YAO . . . C 3 -3.002 75.046 88.227 1 77.03 ? N7 YAO 901 A 1 
HETATM 52 N N8 YAO . . . C 3 -2.02 77.81 89.089 1 72.35 ? N8 YAO 901 A 1 
HETATM 53 N N9 YAO . . . C 3 -4.057 78.018 90.087 1 71.84 ? N9 YAO 901 A 1 
HETATM 54 O O1 YAO . . . C 3 -8.518 56.94 80.76 1 93.14 ? O1 YAO 901 A 1 
HETATM 55 O O10 YAO . . . C 3 -7.447 66.75 91.192 1 89.89 -1 O10 YAO 901 A 1 
HETATM 56 O O11 YAO . . . C 3 -5.689 66.945 89.642 1 71.98 ? O11 YAO 901 A 1 
HETATM 57 O O12 YAO . . . C 3 -7.798 67.112 88.701 1 77.96 ? O12 YAO 901 A 1 
HETATM 58 O O13 YAO . . . C 3 -5.851 68.246 87.621 1 76.16 -1 O13 YAO 901 A 1 
HETATM 59 O O14 YAO . . . C 3 -6.868 69.152 89.618 1 87.17 ? O14 YAO 901 A 1 
HETATM 60 O O15 YAO . . . C 3 -5.867 72.55 89.719 1 69.86 ? O15 YAO 901 A 1 
HETATM 61 O O16 YAO . . . C 3 -6.946 73.75 86.609 1 80.94 ? O16 YAO 901 A 1 
HETATM 62 O O17 YAO . . . C 3 -8.629 73.004 88.464 1 81.22 ? O17 YAO 901 A 1 
HETATM 63 O O2 YAO . . . C 3 -3.194 52.965 86.898 1 114.36 ? O2 YAO 901 A 1 
HETATM 64 O O3 YAO . . . C 3 -9.877 56.928 82.596 1 93.32 ? O3 YAO 901 A 1 
HETATM 65 O O4 YAO . . . C 3 -9.276 57.031 86.896 1 84.4 ? O4 YAO 901 A 1 
HETATM 66 O O5 YAO . . . C 3 -7.604 62.177 85.398 1 82.55 ? O5 YAO 901 A 1 
HETATM 67 O O6 YAO . . . C 3 -5.761 61.427 88.171 1 79.79 ? O6 YAO 901 A 1 
HETATM 68 O O7 YAO . . . C 3 -8.329 63.476 87.413 1 86.4 ? O7 YAO 901 A 1 
HETATM 69 O O8 YAO . . . C 3 -7.141 64.929 89.813 1 77.08 ? O8 YAO 901 A 1 
HETATM 70 O O9 YAO . . . C 3 -5.338 65.438 91.48 1 68.09 ? O9 YAO 901 A 1 
HETATM 71 P P1 YAO . . . C 3 -6.364 65.988 90.632 1 78.46 ? P1 YAO 901 A 1 
HETATM 72 P P2 YAO . . . C 3 -6.585 67.872 88.809 1 84.68 ? P2 YAO 901 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           72 
#