data_8FSP
#
_model_server_result.job_id            Qged3ECXMQH6aROq5IEGuQ 
_model_server_result.datetime_utc      '2024-10-10 22:32:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fsp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":504}' 
#
_entry.id    8FSP 
#
_exptl.entry_id    8FSP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              296.367 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(1R,3S,4R)-1-azabicyclo[2.2.2]octan-3-yl]-1,3,4,5-tetrahydro-6H-azepino[5,4,3-cd]indazol-6-one 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FSP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 Q N N 
? 3 U N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 210 A CYS 135 1_555 A SG CYS 224 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 210 B CYS 135 1_555 B SG CYS 224 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 210 C CYS 135 1_555 C SG CYS 224 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 D SG CYS 210 D CYS 135 1_555 D SG CYS 224 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 210 E CYS 135 1_555 E SG CYS 224 E CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 157 A ASN 82 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale2 A ND2 ASN 223 A ASN 148 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 A ND2 ASN 239 A ASN 164 1_555 H C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 B ND2 ASN 157 B ASN 82 1_555 J C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale5 B ND2 ASN 223 B ASN 148 1_555 K C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale6 B ND2 ASN 239 B ASN 164 1_555 L C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale7 C ND2 ASN 157 C ASN 82 1_555 N C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale8 C ND2 ASN 223 C ASN 148 1_555 O C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale9 C ND2 ASN 239 C ASN 164 1_555 P C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale10 D ND2 ASN 157 D ASN 82 1_555 R C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale11 D ND2 ASN 223 D ASN 148 1_555 S C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale12 D ND2 ASN 239 D ASN 164 1_555 T C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale13 E ND2 ASN 157 E ASN 82 1_555 W C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale14 E ND2 ASN 223 E ASN 148 1_555 X C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale15 E ND2 ASN 239 E ASN 164 1_555 Y C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C17 H20 N4 O' 
_chem_comp.formula_weight    296.367 
_chem_comp.id                Y82 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(1R,3S,4R)-1-azabicyclo[2.2.2]octan-3-yl]-1,3,4,5-tetrahydro-6H-azepino[5,4,3-cd]indazol-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 N4 Y82 sing 404 n n 
C17 C16 Y82 sing 405 n n 
N4 C12 Y82 sing 406 n n 
N4 C13 Y82 sing 407 n n 
C12 C11 Y82 sing 408 n n 
C9 C7 Y82 sing 409 n n 
C9 C10 Y82 sing 410 n n 
C13 C14 Y82 sing 411 n n 
N2 C7 Y82 doub 412 n y 
N2 N1 Y82 sing 413 n y 
C16 C15 Y82 sing 414 n n 
C7 C8 Y82 sing 415 n y 
O1 C1 Y82 doub 416 n n 
N1 C6 Y82 sing 417 n y 
C11 N3 Y82 sing 418 n n 
C11 C15 Y82 sing 419 n n 
C8 C6 Y82 doub 420 n y 
C8 C2 Y82 sing 421 n y 
C1 N3 Y82 sing 422 n n 
C1 C2 Y82 sing 423 n n 
N3 C10 Y82 sing 424 n n 
C6 C5 Y82 sing 425 n y 
C2 C3 Y82 doub 426 n y 
C5 C4 Y82 doub 427 n y 
C3 C4 Y82 sing 428 n y 
C15 C14 Y82 sing 429 n n 
C5 H1 Y82 sing 430 n n 
N1 H2 Y82 sing 431 n n 
C4 H3 Y82 sing 432 n n 
C10 H5 Y82 sing 433 n n 
C10 H6 Y82 sing 434 n n 
C11 H7 Y82 sing 435 n n 
C12 H8 Y82 sing 436 n n 
C12 H9 Y82 sing 437 n n 
C13 H10 Y82 sing 438 n n 
C13 H11 Y82 sing 439 n n 
C14 H12 Y82 sing 440 n n 
C14 H13 Y82 sing 441 n n 
C15 H14 Y82 sing 442 n n 
C16 H15 Y82 sing 443 n n 
C16 H16 Y82 sing 444 n n 
C17 H17 Y82 sing 445 n n 
C17 H18 Y82 sing 446 n n 
C3 H19 Y82 sing 447 n n 
C9 H20 Y82 sing 448 n n 
C9 H21 Y82 sing 449 n n 
#
_atom_sites.entry_id                     8FSP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 502 NAG NAG . 
G 2 NAG A 1 502 503 NAG NAG . 
H 2 NAG A 1 503 504 NAG NAG . 
I 3 Y82 A 1 504 505 Y82 SMP . 
J 2 NAG B 1 501 502 NAG NAG . 
K 2 NAG B 1 502 503 NAG NAG . 
L 2 NAG B 1 503 504 NAG NAG . 
M 3 Y82 B 1 504 505 Y82 SMP . 
N 2 NAG C 1 501 502 NAG NAG . 
O 2 NAG C 1 502 503 NAG NAG . 
P 2 NAG C 1 503 504 NAG NAG . 
Q 3 Y82 C 1 504 505 Y82 SMP . 
R 2 NAG D 1 501 502 NAG NAG . 
S 2 NAG D 1 502 503 NAG NAG . 
T 2 NAG D 1 503 504 NAG NAG . 
U 3 Y82 D 1 504 505 Y82 SMP . 
V 3 Y82 E 1 501 505 Y82 SMP . 
W 2 NAG E 1 502 502 NAG NAG . 
X 2 NAG E 1 503 503 NAG NAG . 
Y 2 NAG E 1 504 504 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 Y82 . . . I 3 137.354 157.447 131.093 1 30 ? C8 Y82 504 A 1 
HETATM 2 C C5 Y82 . . . I 3 136.477 159.713 130.885 1 30 ? C5 Y82 504 A 1 
HETATM 3 C C6 Y82 . . . I 3 136.307 158.349 130.894 1 30 ? C6 Y82 504 A 1 
HETATM 4 N N1 Y82 . . . I 3 135.203 157.568 130.721 1 30 ? N1 Y82 504 A 1 
HETATM 5 C C2 Y82 . . . I 3 138.639 157.873 131.303 1 30 ? C2 Y82 504 A 1 
HETATM 6 N N3 Y82 . . . I 3 139.863 155.756 131.033 1 30 ? N3 Y82 504 A 1 
HETATM 7 C C4 Y82 . . . I 3 137.77 160.127 131.098 1 30 ? C4 Y82 504 A 1 
HETATM 8 N N2 Y82 . . . I 3 135.493 156.269 130.801 1 30 ? N2 Y82 504 A 1 
HETATM 9 N N4 Y82 . . . I 3 142.474 153.768 129.533 1 30 ? N4 Y82 504 A 1 
HETATM 10 C C7 Y82 . . . I 3 136.76 156.193 131.032 1 30 ? C7 Y82 504 A 1 
HETATM 11 C C1 Y82 . . . I 3 139.851 157.013 131.516 1 30 ? C1 Y82 504 A 1 
HETATM 12 C C10 Y82 . . . I 3 138.745 155.18 130.319 1 30 ? C10 Y82 504 A 1 
HETATM 13 C C11 Y82 . . . I 3 141.069 154.947 131.249 1 30 ? C11 Y82 504 A 1 
HETATM 14 C C12 Y82 . . . I 3 142.085 155.133 130.113 1 30 ? C12 Y82 504 A 1 
HETATM 15 C C13 Y82 . . . I 3 143.173 152.936 130.601 1 30 ? C13 Y82 504 A 1 
HETATM 16 C C14 Y82 . . . I 3 142.321 152.968 131.863 1 30 ? C14 Y82 504 A 1 
HETATM 17 C C15 Y82 . . . I 3 140.889 153.446 131.576 1 30 ? C15 Y82 504 A 1 
HETATM 18 C C16 Y82 . . . I 3 140.533 152.571 130.351 1 30 ? C16 Y82 504 A 1 
HETATM 19 C C17 Y82 . . . I 3 141.228 153.021 129.07 1 30 ? C17 Y82 504 A 1 
HETATM 20 C C3 Y82 . . . I 3 138.816 159.247 131.302 1 30 ? C3 Y82 504 A 1 
HETATM 21 C C9 Y82 . . . I 3 137.528 154.948 131.185 1 30 ? C9 Y82 504 A 1 
HETATM 22 O O1 Y82 . . . I 3 140.803 157.492 132.105 1 30 ? O1 Y82 504 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#